2CX8A

Crystal structure of methyltransferase with ligand(sah)
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
Knots found
sequence length
225
structure length
225
Chain Sequence
HRAFSPGLTGVLPLRETRHLVEVLRARVGDRFTVFDGEREALAEVVDLGPPLRYRVLEERRPEREVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARGFTPVSLGRRILRAETAALALLALCTAGEGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords methyl transferase
publication title Crystal structure of methyltransferase with ligand(SAH)
rcsb
source organism Thermus thermophilus
total genus 70
structure length 225
sequence length 225
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature
pdb deposition date 2005-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2cx8A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2cx8A02
4JALA 5D9FA 4YQ1A 1OY5A 1X7PA 3N4JA 4YQ4A 3OIIA 1TO0A 4YVKA 4YQJA 4YQDA 3NK6A 2QMMA 2CX8A 5GMBA 1GZ0A 4YQSA 3E5YA 4YQCA 3BBEA 5FAIA 4L69A 1VH0A 3QUVA 4PZKA 3AXZA 4YQPA 4XBOA 3BBDA 4J3CA 4X3MA 4YQ5A 4YQ7A 4CNGA 1UAMA 2Z0YA 2EGWA 4YPXA 4YQKA 3IC6A 4IG6A 3OIJA 4YQRA 2V3JA 4CNFA 4MCDA 3KW2A 4MCCA 3L8UA 5CO4A 3O7BA 4YVJA 2EGVA 1NXZA 4YVGA 4YQ8A 3AIAA 4YQ0A 4MCBA 1X7OA 1VHYA 4YPZA 4YQIA 4YQ9A 4YQQA 4FAKA 4CNEA 4KGNA 4YQTA 3BBHA 4JAKA 1IPAA 4YQ3A 3DCMX 3GYQA 3KY7A 4CNDA 4YQBA 1UALA 1J85A 1O6DA 1Z85A 4YQ6A 1P9PA 1MXIA 4YQLA 3ONPA 1UAKA 5GM8A 2NWAA 4H3ZA 2I6DA 2QWVA 4YQOA 4YVIA 3OINA 3IEFA 4KDZA 2HA8A 3KTYA 3KNUA 1V2XA 3N4KA 4YQ2A 4YQGA 2YY8A 4YPYA 1ZJRA 4H3YA 4E8BA 3ILKA 4RG1A 1VHKA 3AI9X 4YQAA 4YQNA 1K3RA 4YVHA 4YPWA 2O3AA 4X3LA 1NS5A 2V3KA 1UAJA 1V6ZA 5GMCA 3NK7A
chains in the Genus database with same CATH superfamily
4JALA 3X1LB 5D9FA 4YQ1A 1QRUA 1OY5A 1X7PA 5HL7S 5GAHW 3N4JA 4YQ4A 1UDXA 4WFBS 5GADW 4JYZA 3OIIA 1TO0A 4YVKA 1B75A 4YQJA 4YQDA 3NK6A 5GAGW 5GAEW 1QTQA 2CX8A 2G5DA 3W2WB 2QMMA 5GMBA 5BNZA 4JWJA 3CF5S 1GZ0A 4IOCS 5DM6S 4YQSA 1NYLA 1QRSA 3E5YA 4H4KA 4YQCA 3BBEA 5FAIA 4L69A 2GAEA 1VH0A 3QUVA 4PZKA 3AXZA 4YQPA 2G6GA 5DM7S 3BBDA 4J3CA 4X3MA 2RE8A 4XBOA 4WFAS 4YQ5A 4YQ7A 4CNGA 1FEUA 4WFNS 1EUQA 1UAMA 1O0CA 2Z0YA 2EGWA 4YPXA 4YQKA 1EUYA 3IC6A 4IG6A 3OIJA 4YQRA 2V3JA 4CNFA 4MCDA 3KW2A 4MCCA 3L8UA 5CO4A 3O7BA 4YVJA 2EGVA 1NXZA 4YVGA 1EXDA 2PICA 4YQ8A 4P2BA 4WF9S 3PIOS 2AE0X 3AIAA 4YQ0A 4MCBA 1X7OA 1VHYA 4YPZA 5JVHS 4UY88 4FMWA 4YQIA 4JXXA 4YQ9A 4YQQA 3DLLS 4FAKA 4CNEA 4WCES 4JWGA 2PNWA 2ZJRS 4KGNA 2PI8A 4YQTA 3BBHA 2ZJQS 4JAKA 1IPAA 4YQ3A 3DCMX 3GYQA 3KY7A 4CNDA 3PIPS 4YQBA 2PJJA 1GTRA 1UALA 1J85A 1O6DA 4V194 1Z85A 4YQ6A 1P9PA 1MXIA 4YQLA 4JXZA 3ONPA 1UAKA 3AIIA 5GM8A 2NWAA 4H3ZA 2RD2A 5JVGS 2I6DA 2QWVA 3W2VB 4YQOA 4YVIA 1GTSA 3OINA 4IOAS 3IEFA 4KDZA 2HA8A 3KTYA 3KNUA 1V2XA 4JWHA 2HZ7A 3N4KA 4YQ2A 4YQGA 1ZJWA 1D6KA 1O0BA 4H3SA 2YY8A 4YPYA 1ZJRA 4H3YA 4E8BA 3ILKA 4RG1A 1QRTA 1VHKA 1DFUP 3AI9X 4YQAA 4YQNA 1K3RA 4YVHA 4YPWA 2O3AA 4X3LA 1NS5A 4IO9S 2V3KA 3J7ZV 4U67S 1UAJA 2ZJPS 3CZBA 1V6ZA 4JWFA 5IZNA 5GMCA 3NK7A
chains in the Genus database with same CATH topology
4JALA 5D9FA 4YQ1A 1OY5A 1X7PA 3N4JA 4YQ4A 3OIIA 1TO0A 4YVKA 4YQJA 4YQDA 3NK6A 2QMMA 2CX8A 5GMBA 4JWJA 1GZ0A 4YQSA 3E5YA 4YQCA 3BBEA 5FAIA 4L69A 1VH0A 3QUVA 4PZKA 3AXZA 4YQPA 4XBOA 3BBDA 4J3CA 4X3MA 4YQ5A 4YQ7A 4CNGA 1UAMA 2Z0YA 2EGWA 4YPXA 4YQKA 3IC6A 4IG6A 3OIJA 4YQRA 2V3JA 4CNFA 4MCDA 3KW2A 4MCCA 3L8UA 5CO4A 3O7BA 4YVJA 2EGVA 1NXZA 4YVGA 4YQ8A 3AIAA 4YQ0A 4MCBA 1X7OA 1VHYA 4YPZA 4FMWA 4YQIA 4YQ9A 4YQQA 4FAKA 4CNEA 4JWGA 4KGNA 4YQTA 3BBHA 4JAKA 1IPAA 4YQ3A 3DCMX 3GYQA 3KY7A 4CNDA 4YQBA 1UALA 1J85A 1O6DA 1Z85A 4YQ6A 1P9PA 1MXIA 4YQLA 3ONPA 1UAKA 5GM8A 2NWAA 4H3ZA 2I6DA 2QWVA 4YQOA 4YVIA 3OINA 3IEFA 4KDZA 2HA8A 3KTYA 3KNUA 1V2XA 4JWHA 3N4KA 4YQ2A 4YQGA 2YY8A 4YPYA 1ZJRA 4H3YA 4E8BA 3ILKA 4RG1A 1VHKA 3AI9X 4YQAA 4YQNA 1K3RA 4YVHA 4YPWA 2O3AA 4X3LA 1NS5A 2V3KA 1UAJA 1V6ZA 4JWFA 5GMCA 3NK7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JAL A;  5D9F A;  4YQ1 A;  1OY5 A;  1X7P A;  3N4J A;  4YQ4 A;  3OII A;  1TO0 A;  4YVK A;  4YQJ A;  4YQD A;  3NK6 A;  2QMM A;  2CX8 A;  5GMB A;  1GZ0 A;  4YQS A;  3E5Y A;  4YQC A;  3BBE A;  5FAI A;  4L69 A;  1VH0 A;  3QUV A;  4PZK A;  3AXZ A;  4YQP A;  4XBO A;  3BBD A;  4J3C A;  4X3M A;  4YQ5 A;  4YQ7 A;  4CNG A;  1UAM A;  2Z0Y A;  2EGW A;  4YPX A;  4YQK A;  3IC6 A;  4IG6 A;  3OIJ A;  4YQR A;  2V3J A;  4CNF A;  4MCD A;  3KW2 A;  4MCC A;  3L8U A;  5CO4 A;  3O7B A;  4YVJ A;  2EGV A;  1NXZ A;  4YVG A;  4YQ8 A;  3AIA A;  4YQ0 A;  4MCB A;  1X7O A;  1VHY A;  4YPZ A;  4YQI A;  4YQ9 A;  4YQQ A;  4FAK A;  4CNE A;  4KGN A;  4YQT A;  3BBH A;  4JAK A;  1IPA A;  4YQ3 A;  3DCM X;  3GYQ A;  3KY7 A;  4CND A;  4YQB A;  1UAL A;  1J85 A;  1O6D A;  1Z85 A;  4YQ6 A;  1P9P A;  1MXI A;  4YQL A;  3ONP A;  1UAK A;  5GM8 A;  2NWA A;  4H3Z A;  2I6D A;  2QWV A;  4YQO A;  4YVI A;  3OIN A;  3IEF A;  4KDZ A;  2HA8 A;  3KTY A;  3KNU A;  1V2X A;  3N4K A;  4YQ2 A;  4YQG A;  2YY8 A;  4YPY A;  1ZJR A;  4H3Y A;  4E8B A;  3ILK A;  4RG1 A;  1VHK A;  3AI9 X;  4YQA A;  4YQN A;  1K3R A;  4YVH A;  4YPW A;  2O3A A;  4X3L A;  1NS5 A;  2V3K A;  1UAJ A;  1V6Z A;  5GMC A;  3NK7 A; 
#chains in the Genus database with same CATH topology
 4JAL A;  3X1L B;  5D9F A;  4YQ1 A;  1QRU A;  1OY5 A;  1X7P A;  5HL7 S;  5GAH W;  3N4J A;  4YQ4 A;  1UDX A;  4WFB S;  5GAD W;  4JYZ A;  3OII A;  1TO0 A;  4YVK A;  1B75 A;  4YQJ A;  4YQD A;  3NK6 A;  5GAG W;  5GAE W;  1QTQ A;  2CX8 A;  2G5D A;  3W2W B;  2QMM A;  5GMB A;  5BNZ A;  4JWJ A;  3CF5 S;  1GZ0 A;  4IOC S;  5DM6 S;  4YQS A;  1NYL A;  1QRS A;  3E5Y A;  4H4K A;  4YQC A;  3BBE A;  5FAI A;  4L69 A;  2GAE A;  1VH0 A;  3QUV A;  4PZK A;  3AXZ A;  4YQP A;  2G6G A;  5DM7 S;  3BBD A;  4J3C A;  4X3M A;  2RE8 A;  4XBO A;  4WFA S;  4YQ5 A;  4YQ7 A;  4CNG A;  1FEU A;  4WFN S;  1EUQ A;  1UAM A;  1O0C A;  2Z0Y A;  2EGW A;  4YPX A;  4YQK A;  1EUY A;  3IC6 A;  4IG6 A;  3OIJ A;  4YQR A;  2V3J A;  4CNF A;  4MCD A;  3KW2 A;  4MCC A;  3L8U A;  5CO4 A;  3O7B A;  4YVJ A;  2EGV A;  1NXZ A;  4YVG A;  1EXD A;  2PIC A;  4YQ8 A;  4P2B A;  4WF9 S;  3PIO S;  2AE0 X;  3AIA A;  4YQ0 A;  4MCB A;  1X7O A;  1VHY A;  4YPZ A;  5JVH S;  4UY8 8;  4FMW A;  4YQI A;  4JXX A;  4YQ9 A;  4YQQ A;  3DLL S;  4FAK A;  4CNE A;  4WCE S;  4JWG A;  2PNW A;  2ZJR S;  4KGN A;  2PI8 A;  4YQT A;  3BBH A;  2ZJQ S;  4JAK A;  1IPA A;  4YQ3 A;  3DCM X;  3GYQ A;  3KY7 A;  4CND A;  3PIP S;  4YQB A;  2PJJ A;  1GTR A;  1UAL A;  1J85 A;  1O6D A;  4V19 4;  1Z85 A;  4YQ6 A;  1P9P A;  1MXI A;  4YQL A;  4JXZ A;  3ONP A;  1UAK A;  3AII A;  5GM8 A;  2NWA A;  4H3Z A;  2RD2 A;  5JVG S;  2I6D A;  2QWV A;  3W2V B;  4YQO A;  4YVI A;  1GTS A;  3OIN A;  4IOA S;  3IEF A;  4KDZ A;  2HA8 A;  3KTY A;  3KNU A;  1V2X A;  4JWH A;  2HZ7 A;  3N4K A;  4YQ2 A;  4YQG A;  1ZJW A;  1D6K A;  1O0B A;  4H3S A;  2YY8 A;  4YPY A;  1ZJR A;  4H3Y A;  4E8B A;  3ILK A;  4RG1 A;  1QRT A;  1VHK A;  1DFU P;  3AI9 X;  4YQA A;  4YQN A;  1K3R A;  4YVH A;  4YPW A;  2O3A A;  4X3L A;  1NS5 A;  4IO9 S;  2V3K A;  3J7Z V;  4U67 S;  1UAJ A;  2ZJP S;  3CZB A;  1V6Z A;  4JWF A;  5IZN A;  5GMC A;  3NK7 A; 
#chains in the Genus database with same CATH homology
 4JAL A;  5D9F A;  4YQ1 A;  1OY5 A;  1X7P A;  3N4J A;  4YQ4 A;  3OII A;  1TO0 A;  4YVK A;  4YQJ A;  4YQD A;  3NK6 A;  2QMM A;  2CX8 A;  5GMB A;  4JWJ A;  1GZ0 A;  4YQS A;  3E5Y A;  4YQC A;  3BBE A;  5FAI A;  4L69 A;  1VH0 A;  3QUV A;  4PZK A;  3AXZ A;  4YQP A;  4XBO A;  3BBD A;  4J3C A;  4X3M A;  4YQ5 A;  4YQ7 A;  4CNG A;  1UAM A;  2Z0Y A;  2EGW A;  4YPX A;  4YQK A;  3IC6 A;  4IG6 A;  3OIJ A;  4YQR A;  2V3J A;  4CNF A;  4MCD A;  3KW2 A;  4MCC A;  3L8U A;  5CO4 A;  3O7B A;  4YVJ A;  2EGV A;  1NXZ A;  4YVG A;  4YQ8 A;  3AIA A;  4YQ0 A;  4MCB A;  1X7O A;  1VHY A;  4YPZ A;  4FMW A;  4YQI A;  4YQ9 A;  4YQQ A;  4FAK A;  4CNE A;  4JWG A;  4KGN A;  4YQT A;  3BBH A;  4JAK A;  1IPA A;  4YQ3 A;  3DCM X;  3GYQ A;  3KY7 A;  4CND A;  4YQB A;  1UAL A;  1J85 A;  1O6D A;  1Z85 A;  4YQ6 A;  1P9P A;  1MXI A;  4YQL A;  3ONP A;  1UAK A;  5GM8 A;  2NWA A;  4H3Z A;  2I6D A;  2QWV A;  4YQO A;  4YVI A;  3OIN A;  3IEF A;  4KDZ A;  2HA8 A;  3KTY A;  3KNU A;  1V2X A;  4JWH A;  3N4K A;  4YQ2 A;  4YQG A;  2YY8 A;  4YPY A;  1ZJR A;  4H3Y A;  4E8B A;  3ILK A;  4RG1 A;  1VHK A;  3AI9 X;  4YQA A;  4YQN A;  1K3R A;  4YVH A;  4YPW A;  2O3A A;  4X3L A;  1NS5 A;  2V3K A;  1UAJ A;  1V6Z A;  4JWF A;  5GMC A;  3NK7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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