2D04B

Crystal structure of neoculin, a sweet protein with taste-modifying activity.
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
111
structure length
111
Chain Sequence
DNVLLSGQTLHADHSLQAGAYTLTIQNKCNLVKYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGSACWGDNGKYALVLQKDGRFVIYGPVLWSLGPNGCRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords neoculin acidic subunit
publication title Crystal structure of neoculin: insights into its sweetness and taste-modifying activity
pubmed doi rcsb
total genus 21
structure length 111
sequence length 111
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2005-07-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 2d04B00
1KJ1A 3A0EA 5T1XB 5J76B 1NPLA 1BWUA 4H3OA 1MSAA 2D04B 1XD6A 4GC2A 1B2PA 3M7HA 1JPCA 3R0EB 1NIVA 5D9ZB 5T20B 3MEZB 5T1XA 1BWUQ 5J76A 2DPFA 4PDTA 1DLPA 3A0CA 5D5GB 4GC1A 2D04A 3DZWA 1XD5A 1KJ1D 4TKCA 3M7JA 1BWUD 3R0EA 3A0DA 3MEZA 5D9ZA 5T20A 1BWUP 5D5GA
chains in the Genus database with same CATH superfamily
1KJ1A 3A0EA 5T1XB 5J76B 1NPLA 1BWUA 4H3OA 4OKCA 1MSAA 2D04B 4LEDA 1XD6A 4GC2A 1B2PA 3M7HA 1JPCA 3R0EB 4LEAA 1NIVA 5D9ZB 5T20B 3MEZB 5T1XA 1BWUQ 5J76A 2DPFA 4PDTA 1DLPA 3A0CA 5D5GB 4GC1A 2D04A 3DZWA 4OITA 1XD5A 1KJ1D 4TKCA 4OIZA 3M7JA 1BWUD 3R0EA 3A0DA 4LE7A 3MEZA 5D9ZA 5T20A 1BWUP 5D5GA
chains in the Genus database with same CATH topology
1KJ1A 3A0EA 5T1XB 5J76B 1NPLA 1BWUA 4H3OA 1MSAA 2D04B 1XD6A 4GC2A 1B2PA 3M7HA 1JPCA 3R0EB 1NIVA 5D9ZB 5T20B 3MEZB 5T1XA 1BWUQ 5J76A 2DPFA 4PDTA 1DLPA 3A0CA 5D5GB 4GC1A 2D04A 3DZWA 1XD5A 1KJ1D 4TKCA 3M7JA 1BWUD 3R0EA 3A0DA 3MEZA 5D9ZA 5T20A 1BWUP 5D5GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KJ1 A;  3A0E A;  5T1X B;  5J76 B;  1NPL A;  1BWU A;  4H3O A;  1MSA A;  2D04 B;  1XD6 A;  4GC2 A;  1B2P A;  3M7H A;  1JPC A;  3R0E B;  1NIV A;  5D9Z B;  5T20 B;  3MEZ B;  5T1X A;  1BWU Q;  5J76 A;  2DPF A;  4PDT A;  1DLP A;  3A0C A;  5D5G B;  4GC1 A;  2D04 A;  3DZW A;  1XD5 A;  1KJ1 D;  4TKC A;  3M7J A;  1BWU D;  3R0E A;  3A0D A;  3MEZ A;  5D9Z A;  5T20 A;  1BWU P;  5D5G A; 
#chains in the Genus database with same CATH topology
 1KJ1 A;  3A0E A;  5T1X B;  5J76 B;  1NPL A;  1BWU A;  4H3O A;  4OKC A;  1MSA A;  2D04 B;  4LED A;  1XD6 A;  4GC2 A;  1B2P A;  3M7H A;  1JPC A;  3R0E B;  4LEA A;  1NIV A;  5D9Z B;  5T20 B;  3MEZ B;  5T1X A;  1BWU Q;  5J76 A;  2DPF A;  4PDT A;  1DLP A;  3A0C A;  5D5G B;  4GC1 A;  2D04 A;  3DZW A;  4OIT A;  1XD5 A;  1KJ1 D;  4TKC A;  4OIZ A;  3M7J A;  1BWU D;  3R0E A;  3A0D A;  4LE7 A;  3MEZ A;  5D9Z A;  5T20 A;  1BWU P;  5D5G A; 
#chains in the Genus database with same CATH homology
 1KJ1 A;  3A0E A;  5T1X B;  5J76 B;  1NPL A;  1BWU A;  4H3O A;  1MSA A;  2D04 B;  1XD6 A;  4GC2 A;  1B2P A;  3M7H A;  1JPC A;  3R0E B;  1NIV A;  5D9Z B;  5T20 B;  3MEZ B;  5T1X A;  1BWU Q;  5J76 A;  2DPF A;  4PDT A;  1DLP A;  3A0C A;  5D5G B;  4GC1 A;  2D04 A;  3DZW A;  1XD5 A;  1KJ1 D;  4TKC A;  3M7J A;  1BWU D;  3R0E A;  3A0D A;  3MEZ A;  5D9Z A;  5T20 A;  1BWU P;  5D5G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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