2DPFA

Crystal structure of curculin1 homodimer
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
111
structure length
111
Chain Sequence
DNVLLSGQTLHADHSLQAGAYTLTIQNKCNLVKYQNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGSACWGDNGKYALVLQKDGRFVIYGPVLWSLGPNGCRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords Curculin
publication title Curculin Exhibits Sweet-tasting and Taste-modifying Activities through Its Distinct Molecular Surfaces.
pubmed doi rcsb
source organism Curculigo latifolia
total genus 20
structure length 111
sequence length 111
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-05-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.90.10.10 Mainly Beta Orthogonal Prism Agglutinin, subunit A Bulb-type lectin domain 2dpfA00
1XD5A 5D9ZA 5T1XB 5T1XA 1MSAA 5T20B 5T20A 1NIVA 1BWUD 3A0CA 4GC2A 1BWUA 3DZWA 3A0EA 4PDTA 3R0EB 3R0EA 1B2PA 1KJ1D 1BWUP 3A0DA 1DLPA 3M7HA 3MEZB 3MEZA 4GC1A 3M7JA 5J76B 1KJ1A 2D04A 2D04B 5J76A 1NPLA 1XD6A 4TKCA 5D5GB 2DPFA 5D5GA 1JPCA 1BWUQ 4H3OA 5D9ZB
chains in the Genus database with same CATH superfamily
1XD5A 5D9ZA 5T1XB 5T1XA 1MSAA 5T20B 5T20A 1NIVA 1BWUD 3A0CA 4GC2A 1BWUA 3DZWA 4LEAA 4OIZA 3A0EA 4PDTA 3R0EB 3R0EA 1B2PA 1KJ1D 1BWUP 3A0DA 1DLPA 3M7HA 3MEZB 3MEZA 4GC1A 4LEDA 3M7JA 5J76B 1KJ1A 2D04A 2D04B 5J76A 1NPLA 4OKCA 1XD6A 4TKCA 5D5GB 2DPFA 4LE7A 5D5GA 4OITA 1JPCA 1BWUQ 4H3OA 5D9ZB
chains in the Genus database with same CATH topology
1XD5A 5D9ZA 5T1XB 5T1XA 1MSAA 5T20B 5T20A 1NIVA 1BWUD 3A0CA 4GC2A 1BWUA 3DZWA 3A0EA 4PDTA 3R0EB 3R0EA 1B2PA 1KJ1D 1BWUP 3A0DA 1DLPA 3M7HA 3MEZB 3MEZA 4GC1A 3M7JA 5J76B 1KJ1A 2D04A 2D04B 5J76A 1NPLA 1XD6A 4TKCA 5D5GB 2DPFA 5D5GA 1JPCA 1BWUQ 4H3OA 5D9ZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XD5 A;  5D9Z A;  5T1X B;  5T1X A;  1MSA A;  5T20 B;  5T20 A;  1NIV A;  1BWU D;  3A0C A;  4GC2 A;  1BWU A;  3DZW A;  3A0E A;  4PDT A;  3R0E B;  3R0E A;  1B2P A;  1KJ1 D;  1BWU P;  3A0D A;  1DLP A;  3M7H A;  3MEZ B;  3MEZ A;  4GC1 A;  3M7J A;  5J76 B;  1KJ1 A;  2D04 A;  2D04 B;  5J76 A;  1NPL A;  1XD6 A;  4TKC A;  5D5G B;  2DPF A;  5D5G A;  1JPC A;  1BWU Q;  4H3O A;  5D9Z B; 
#chains in the Genus database with same CATH topology
 1XD5 A;  5D9Z A;  5T1X B;  5T1X A;  1MSA A;  5T20 B;  5T20 A;  1NIV A;  1BWU D;  3A0C A;  4GC2 A;  1BWU A;  3DZW A;  4LEA A;  4OIZ A;  3A0E A;  4PDT A;  3R0E B;  3R0E A;  1B2P A;  1KJ1 D;  1BWU P;  3A0D A;  1DLP A;  3M7H A;  3MEZ B;  3MEZ A;  4GC1 A;  4LED A;  3M7J A;  5J76 B;  1KJ1 A;  2D04 A;  2D04 B;  5J76 A;  1NPL A;  4OKC A;  1XD6 A;  4TKC A;  5D5G B;  2DPF A;  4LE7 A;  5D5G A;  4OIT A;  1JPC A;  1BWU Q;  4H3O A;  5D9Z B; 
#chains in the Genus database with same CATH homology
 1XD5 A;  5D9Z A;  5T1X B;  5T1X A;  1MSA A;  5T20 B;  5T20 A;  1NIV A;  1BWU D;  3A0C A;  4GC2 A;  1BWU A;  3DZW A;  3A0E A;  4PDT A;  3R0E B;  3R0E A;  1B2P A;  1KJ1 D;  1BWU P;  3A0D A;  1DLP A;  3M7H A;  3MEZ B;  3MEZ A;  4GC1 A;  3M7J A;  5J76 B;  1KJ1 A;  2D04 A;  2D04 B;  5J76 A;  1NPL A;  1XD6 A;  4TKC A;  5D5G B;  2DPF A;  5D5G A;  1JPC A;  1BWU Q;  4H3O A;  5D9Z B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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