2EIJI

Bovine heart cytochrome c oxidase in the fully reduced state
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
72
structure length
72
Chain Sequence
TALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQSAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
total genus 23
structure length 72
sequence length 72
chains with identical sequence V
ec nomenclature
pdb deposition date 2007-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF02937 COX6C Cytochrome c oxidase subunit VIc
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.93.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain I Mitochondrial cytochrome c oxidase subunit VIc/VIIs 2eijI00
3AG1I 1OCOI 3AG4I 5B1BI 3X2QI 2ZXWI 3ABMI 5IY5I 2EINI 3AG3I 1V54I 2DYRI 2EIMI 2Y69I 2EIJI 1OCZI 3AG2I 5B3SI 2EILI 3ABKI 1V55I 1OCRI 2DYSI 3ABLI 3ASOI 5B1AI 2OCCI 3WG7I 3ASNI 2EIKI 1OCCI
chains in the Genus database with same CATH superfamily
3AG1I 1OCOI 3AG4I 5B1BI 3X2QI 2ZXWI 3ABMI 5IY5I 2EINI 3AG3I 1V54I 2DYRI 2EIMI 2Y69I 2EIJI 1OCZI 3AG2I 5B3SI 2EILI 3ABKI 1V55I 1OCRI 2DYSI 3ABLI 3ASOI 5B1AI 2OCCI 3WG7I 3ASNI 2EIKI 1OCCI
chains in the Genus database with same CATH topology
3AG1I 1OCOI 3AG4I 5B1BI 3X2QI 2ZXWI 3ABMI 5IY5I 2EINI 3AG3I 1V54I 2DYRI 2EIMI 2Y69I 2EIJI 1OCZI 3AG2I 5B3SI 2EILI 3ABKI 1V55I 1OCRI 2DYSI 3ABLI 3ASOI 5B1AI 2OCCI 3WG7I 3ASNI 2EIKI 1OCCI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AG1 I;  1OCO I;  3AG4 I;  5B1B I;  3X2Q I;  2ZXW I;  3ABM I;  5IY5 I;  2EIN I;  3AG3 I;  1V54 I;  2DYR I;  2EIM I;  2Y69 I;  2EIJ I;  1OCZ I;  3AG2 I;  5B3S I;  2EIL I;  3ABK I;  1V55 I;  1OCR I;  2DYS I;  3ABL I;  3ASO I;  5B1A I;  2OCC I;  3WG7 I;  3ASN I;  2EIK I;  1OCC I; 
#chains in the Genus database with same CATH topology
 3AG1 I;  1OCO I;  3AG4 I;  5B1B I;  3X2Q I;  2ZXW I;  3ABM I;  5IY5 I;  2EIN I;  3AG3 I;  1V54 I;  2DYR I;  2EIM I;  2Y69 I;  2EIJ I;  1OCZ I;  3AG2 I;  5B3S I;  2EIL I;  3ABK I;  1V55 I;  1OCR I;  2DYS I;  3ABL I;  3ASO I;  5B1A I;  2OCC I;  3WG7 I;  3ASN I;  2EIK I;  1OCC I; 
#chains in the Genus database with same CATH homology
 3AG1 I;  1OCO I;  3AG4 I;  5B1B I;  3X2Q I;  2ZXW I;  3ABM I;  5IY5 I;  2EIN I;  3AG3 I;  1V54 I;  2DYR I;  2EIM I;  2Y69 I;  2EIJ I;  1OCZ I;  3AG2 I;  5B3S I;  2EIL I;  3ABK I;  1V55 I;  1OCR I;  2DYS I;  3ABL I;  3ASO I;  5B1A I;  2OCC I;  3WG7 I;  3ASN I;  2EIK I;  1OCC I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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