2EIJL

Bovine heart cytochrome c oxidase in the fully reduced state
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
HYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title A histidine residue acting as a controlling site for dioxygen reduction and proton pumping by cytochrome c oxidase
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Cytochrome c oxidase subunit 1
total genus 12
structure length 46
sequence length 46
chains with identical sequence Y
ec nomenclature
pdb deposition date 2007-03-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.49.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome c oxidase subunit VIIc 2eijL00
2EINL 3AG3L 5IY5L 1V54L 2DYRL 2EIML 2EIJL 1OCZL 3AG2L 2Y69L 5B3SL 3ABKL 2EILL 1V55L 1OCRL 2DYSL 3ABLL 5B1AL 2OCCL 3WG7L 3ASNL 2EIKL 1OCCL 3ASOL 3AG1L 1OCOL 3AG4L 5B1BL 3X2QL 2ZXWL 3ABML
chains in the Genus database with same CATH superfamily
2EINL 3AG3L 5IY5L 1V54L 2DYRL 2EIML 2EIJL 1OCZL 3AG2L 2Y69L 5B3SL 3ABKL 2EILL 1V55L 1OCRL 2DYSL 3ABLL 5B1AL 2OCCL 3WG7L 3ASNL 2EIKL 1OCCL 3ASOL 3AG1L 1OCOL 3AG4L 5B1BL 3X2QL 2ZXWL 3ABML
chains in the Genus database with same CATH topology
2EINL 3AG3L 5IY5L 1V54L 2DYRL 2EIML 2EIJL 1OCZL 3AG2L 2Y69L 5B3SL 3ABKL 2EILL 1V55L 1OCRL 2DYSL 3ABLL 5B1AL 2OCCL 3WG7L 3ASNL 2EIKL 1OCCL 3ASOL 3AG1L 1OCOL 3AG4L 5B1BL 3X2QL 2ZXWL 3ABML
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2EIN L;  3AG3 L;  5IY5 L;  1V54 L;  2DYR L;  2EIM L;  2EIJ L;  1OCZ L;  3AG2 L;  2Y69 L;  5B3S L;  3ABK L;  2EIL L;  1V55 L;  1OCR L;  2DYS L;  3ABL L;  5B1A L;  2OCC L;  3WG7 L;  3ASN L;  2EIK L;  1OCC L;  3ASO L;  3AG1 L;  1OCO L;  3AG4 L;  5B1B L;  3X2Q L;  2ZXW L;  3ABM L; 
#chains in the Genus database with same CATH topology
 2EIN L;  3AG3 L;  5IY5 L;  1V54 L;  2DYR L;  2EIM L;  2EIJ L;  1OCZ L;  3AG2 L;  2Y69 L;  5B3S L;  3ABK L;  2EIL L;  1V55 L;  1OCR L;  2DYS L;  3ABL L;  5B1A L;  2OCC L;  3WG7 L;  3ASN L;  2EIK L;  1OCC L;  3ASO L;  3AG1 L;  1OCO L;  3AG4 L;  5B1B L;  3X2Q L;  2ZXW L;  3ABM L; 
#chains in the Genus database with same CATH homology
 2EIN L;  3AG3 L;  5IY5 L;  1V54 L;  2DYR L;  2EIM L;  2EIJ L;  1OCZ L;  3AG2 L;  2Y69 L;  5B3S L;  3ABK L;  2EIL L;  1V55 L;  1OCR L;  2DYS L;  3ABL L;  5B1A L;  2OCC L;  3WG7 L;  3ASN L;  2EIK L;  1OCC L;  3ASO L;  3AG1 L;  1OCO L;  3AG4 L;  5B1B L;  3X2Q L;  2ZXW L;  3ABM L;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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