2FCCA

Crystal structure of t4 pyrimidine dimer glycosylase (t4-pdg) covalently complexed with a dna substrate containing abasic site
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
137
structure length
137
Chain Sequence
TRINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3')
publication title Structure of T4 Pyrimidine Dimer Glycosylase in a Reduced Imine Covalent Complex with Abasic Site-containing DNA.
pubmed doi rcsb
source organism Enterobacteria phage t4
total genus 45
structure length 137
sequence length 137
chains with identical sequence B
ec nomenclature ec 3.2.2.17: Deoxyribodipyrimidine endonucleosidase.
pdb deposition date 2005-12-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.440.10 Mainly Alpha Orthogonal Bundle Endonuclease V T4 endonuclease V 2fccA00
2FCCA 1ENIA 1ENJA 1VASA 1ENKA 2ENDA
chains in the Genus database with same CATH superfamily
2FCCA 1ENIA 1ENJA 1VASA 1ENKA 2ENDA
chains in the Genus database with same CATH topology
2FCCA 1ENIA 1ENJA 1VASA 1ENKA 2ENDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FCC A;  1ENI A;  1ENJ A;  1VAS A;  1ENK A;  2END A; 
#chains in the Genus database with same CATH topology
 2FCC A;  1ENI A;  1ENJ A;  1VAS A;  1ENK A;  2END A; 
#chains in the Genus database with same CATH homology
 2FCC A;  1ENI A;  1ENJ A;  1VAS A;  1ENK A;  2END A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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