2FL3A

Binary complex of restriction endonuclease hinp1i with cognate dna
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
247
structure length
247
Chain Sequence
MNLVELGSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHYGSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKIDPTELFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'
publication title DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 77
structure length 247
sequence length 247
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11463 R-HINP1I R.HinP1I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.40 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2fl3A01
2FKHB 2FKCA 2FLCA 1YNMA 2FL3A
chains in the Genus database with same CATH superfamily
1A79A 1OB8A 3IF0X 2ZYZB 3BT7A 4QBLA 1HH1A 2W8MA 4E6ZA 1OB9A 2ZYZA 4G6UA 2FL3A 1GEFA 4G6VA 2CV8A 3P1ZB 4EV1A 2FKHB 5FDKA 1Y1OA 3P1YA 2BH2A 4DAVA 3P1ZA 2GJWA 2Z0RA 1ZP7A 1YNMA 1IPIA 2DBSA 2OKFA 2VLDA 1UWVA 2WCWA 1R0VA 3DNXA 4LQEA 2FKCA 1XMXA 4QBOA 2IXSA 2GW6A 4TKKA 2FLCA 2INBA 4TKDA 2CZRA 1F1ZA 2FCOA 3AJVB 4QBNA 2OSTA 4DAPA 2VS1A 1RLVA 2WJ0A 2JJQA 2WIWA 1RZNA 4ZQUA 1Y88A 3AJVA 3IEYB 2WCZA 1R11A 2EO0A 1T0FA 3FOVA 4DA2A 2WIZA 3IEYA
chains in the Genus database with same CATH topology
1A79A 1OB8A 3IF0X 2ZYZB 3BT7A 4QBLA 1HH1A 2W8MA 4E6ZA 1OB9A 2ZYZA 4G6UA 2FL3A 1GEFA 4G6VA 2CV8A 3P1ZB 4EV1A 2FKHB 5FDKA 1Y1OA 3P1YA 2BH2A 4DAVA 3P1ZA 2GJWA 2Z0RA 1ZP7A 1YNMA 1IPIA 2DBSA 2OKFA 2VLDA 1UWVA 2WCWA 1R0VA 3DNXA 4LQEA 2FKCA 1XMXA 4QBOA 2IXSA 2GW6A 4TKKA 2FLCA 2INBA 4TKDA 2CZRA 1F1ZA 2FCOA 3AJVB 4QBNA 2OSTA 4DAPA 2VS1A 1RLVA 2WJ0A 2JJQA 2WIWA 1RZNA 4ZQUA 1Y88A 3AJVA 3IEYB 2WCZA 1R11A 2EO0A 1T0FA 3FOVA 4DA2A 2WIZA 3IEYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FKH B;  2FKC A;  2FLC A;  1YNM A;  2FL3 A; 
#chains in the Genus database with same CATH topology
 1A79 A;  1OB8 A;  3IF0 X;  2ZYZ B;  3BT7 A;  4QBL A;  1HH1 A;  2W8M A;  4E6Z A;  1OB9 A;  2ZYZ A;  4G6U A;  2FL3 A;  1GEF A;  4G6V A;  2CV8 A;  3P1Z B;  4EV1 A;  2FKH B;  5FDK A;  1Y1O A;  3P1Y A;  2BH2 A;  4DAV A;  3P1Z A;  2GJW A;  2Z0R A;  1ZP7 A;  1YNM A;  1IPI A;  2DBS A;  2OKF A;  2VLD A;  1UWV A;  2WCW A;  1R0V A;  3DNX A;  4LQE A;  2FKC A;  1XMX A;  4QBO A;  2IXS A;  2GW6 A;  4TKK A;  2FLC A;  2INB A;  4TKD A;  2CZR A;  1F1Z A;  2FCO A;  3AJV B;  4QBN A;  2OST A;  4DAP A;  2VS1 A;  1RLV A;  2WJ0 A;  2JJQ A;  2WIW A;  1RZN A;  4ZQU A;  1Y88 A;  3AJV A;  3IEY B;  2WCZ A;  1R11 A;  2EO0 A;  1T0F A;  3FOV A;  4DA2 A;  2WIZ A;  3IEY A; 
#chains in the Genus database with same CATH homology
 1A79 A;  1OB8 A;  3IF0 X;  2ZYZ B;  3BT7 A;  4QBL A;  1HH1 A;  2W8M A;  4E6Z A;  1OB9 A;  2ZYZ A;  4G6U A;  2FL3 A;  1GEF A;  4G6V A;  2CV8 A;  3P1Z B;  4EV1 A;  2FKH B;  5FDK A;  1Y1O A;  3P1Y A;  2BH2 A;  4DAV A;  3P1Z A;  2GJW A;  2Z0R A;  1ZP7 A;  1YNM A;  1IPI A;  2DBS A;  2OKF A;  2VLD A;  1UWV A;  2WCW A;  1R0V A;  3DNX A;  4LQE A;  2FKC A;  1XMX A;  4QBO A;  2IXS A;  2GW6 A;  4TKK A;  2FLC A;  2INB A;  4TKD A;  2CZR A;  1F1Z A;  2FCO A;  3AJV B;  4QBN A;  2OST A;  4DAP A;  2VS1 A;  1RLV A;  2WJ0 A;  2JJQ A;  2WIW A;  1RZN A;  4ZQU A;  1Y88 A;  3AJV A;  3IEY B;  2WCZ A;  1R11 A;  2EO0 A;  1T0F A;  3FOV A;  4DA2 A;  2WIZ A;  3IEY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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