2GGBA

Novel bacterial methionine aminopeptidase inhibitors
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
263
structure length
263
Chain Sequence
AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Methionine aminopeptidase
publication title Serendipitous discovery of novel bacterial methionine aminopeptidase inhibitors.
pubmed doi rcsb
source organism Escherichia coli k12
total genus 84
structure length 263
sequence length 263
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2006-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 2ggbA00
1QZYA 1C21A 2V3ZA 4Z7MA 4A6VA 2HOWA 2GU5A 4U6WA 2B3KA 4IU6A 4R60A 4S2RP 2GG7A 1C24A 2V6CA 2NQ7A 4U6EA 2EA4A 1R5HA 2BHCA 3BIQA 2BWTA 2Q8KA 3IU7A 2ZSGA 4HXXA 3TAVA 2BH3A 3CB6A 3IU9A 1XGMA 2P98A 2OKNA 3PKCA 4IECA 2GG8A 4IKSA 2GU7A 2GTXA 2EVOA 4FO8A 2EVCA 1N51A 3PKEA 1W2MA 1KQ0A 1YW9A 4FLKA 1QXYA 1XGNA 1R5GA 4IF7A 3L7GA 4IKUA 1KP0A 1WL9A 3PKAA 2Q94A 2V3YA 1YVMA 5E5BA 2GG9A 3MR1A 5D6FA 4S01A 2BWUA 3MATA 4FUKA 4FLLA 2GZ5A 1B59A 2BWWA 1BN5A 2BHDA 4EGEA 1KQ9A 4JUQA 2V3XA 5CLSA 2GU4A 4U6ZA 4S00A 5CNXA 4PV4A 4FLIA 4RZYA 4U6JA 2BWXA 3BITA 2GA2A 2BWVA 3CB5A 5FCFA 1WY2A 4FKCA 2P9AA 4U70A 1BOAA 5CDVA 4IKRA 2GGCA 1WBQA 3IU8A 3D27A 3PKBA 4OOKA 1M35A 2BWYA 3MX6A 4U76A 2NQ6A 4B28A 2DFIA 3IG4A 4QR8A 2GU6A 4FO7A 5JHUA 1JAWA 2B3HA 2ADUA 3PKDA 2BWSA 1C27A 2B3LA 2GG0A 2Q93A 2EA2A 4IPAA 1C22A 4FLJA 4ZWOA 1XGOA 4U69A 1O0XA 4ZNGA 5CDEA 3S6BA 2EVMA 2IW2A 4ZWPA 4A6WA 5JI6A 4U71A 3FMRA 4PNCA 1WKMA 1CHMA 4ZWUA 1XNZA 2Q96A 2BHAA 1WN1A 3FMQA 4KM3A 4RGZ1 2P99A 2GG5A 1YW7A 4U1BA 2GG2A 2BN7A 4MATA 3Q6DA 4U6CA 3RORA 1PV9A 1WL6A 2BHBA 1A16A 1W7VA 4IDYA 5JFRA 3BIPA 1Y1NA 5CDLA 1YJ3A 2GGBA 5FCHA 4IKTA 1XGSA 1WLRA 1QXWA 4U73A 2BB7A 2Q95A 5D6EA 3CTZA 1MATA 1YW8A 3L24A 3FM3A 3RVAA 2G6PA 1QXZA 2MATA 2GG3A 5CE6A 4RZZA 1C23A 1R58A 4U75A 3TB5A 4S2TP 2OAZA 5CIKA 1B6AA 2Q92A
chains in the Genus database with same CATH superfamily
1QZYA 1C21A 2V3ZA 4Z7MA 4A6VA 2HOWA 2GU5A 4U6WA 2B3KA 4IU6A 4R60A 4S2RP 2GG7A 1C24A 2V6CA 2NQ7A 4U6EA 2EA4A 1R5HA 2BHCA 3BIQA 2BWTA 2Q8KA 3IU7A 2ZSGA 4HXXA 3TAVA 2BH3A 3CB6A 3IU9A 1XGMA 2P98A 2OKNA 3PKCA 4IECA 2GG8A 4IKSA 2GU7A 2GTXA 2EVOA 4FO8A 2EVCA 1N51A 3PKEA 1W2MA 1KQ0A 1YW9A 4FLKA 1QXYA 1XGNA 1R5GA 4IF7A 3L7GA 4IKUA 1KP0A 1WL9A 3PKAA 2Q94A 2V3YA 1YVMA 5E5BA 2GG9A 3MR1A 5D6FA 4S01A 2BWUA 3MATA 4FUKA 4FLLA 2GZ5A 1B59A 2BWWA 1BN5A 2BHDA 4EGEA 1KQ9A 4JUQA 2V3XA 5CLSA 2GU4A 4U6ZA 4S00A 5CNXA 4PV4A 4FLIA 4RZYA 4U6JA 2BWXA 3BITA 2GA2A 2BWVA 3CB5A 5FCFA 1WY2A 4FKCA 2P9AA 4U70A 1BOAA 5CDVA 4IKRA 2GGCA 1WBQA 3IU8A 3D27A 3PKBA 4OOKA 1M35A 2BWYA 3MX6A 4U76A 2NQ6A 4B28A 2DFIA 3IG4A 4QR8A 2GU6A 4FO7A 5JHUA 1JAWA 2B3HA 2ADUA 3PKDA 2BWSA 1C27A 2B3LA 2GG0A 2Q93A 2EA2A 4IPAA 1C22A 4FLJA 4ZWOA 1XGOA 4U69A 1O0XA 4ZNGA 5CDEA 3S6BA 2EVMA 2IW2A 4ZWPA 4A6WA 5JI6A 4U71A 3FMRA 4PNCA 1WKMA 1CHMA 4ZWUA 1XNZA 2Q96A 2BHAA 1WN1A 3FMQA 4KM3A 4RGZ1 2P99A 2GG5A 1YW7A 4U1BA 2GG2A 2BN7A 4MATA 3Q6DA 4U6CA 3RORA 1PV9A 1WL6A 2BHBA 1A16A 1W7VA 4IDYA 5JFRA 3BIPA 1Y1NA 5CDLA 1YJ3A 2GGBA 5FCHA 4IKTA 1XGSA 1WLRA 1QXWA 4U73A 2BB7A 2Q95A 5D6EA 3CTZA 1MATA 1YW8A 3L24A 3FM3A 3RVAA 2G6PA 1QXZA 2MATA 2GG3A 5CE6A 4RZZA 1C23A 1R58A 4U75A 3TB5A 4S2TP 2OAZA 5CIKA 1B6AA 2Q92A
chains in the Genus database with same CATH topology
1QZYA 1C21A 2V3ZA 4Z7MA 4A6VA 2HOWA 2GU5A 4U6WA 2B3KA 4IU6A 4R60A 4S2RP 2GG7A 1C24A 2V6CA 2NQ7A 4U6EA 2EA4A 1R5HA 2BHCA 3BIQA 2BWTA 2Q8KA 3IU7A 2ZSGA 4HXXA 3TAVA 2BH3A 3CB6A 3IU9A 1XGMA 2P98A 2OKNA 3PKCA 4IECA 2GG8A 4IKSA 2GU7A 2GTXA 2EVOA 4FO8A 2EVCA 1N51A 3PKEA 1W2MA 1KQ0A 1YW9A 4FLKA 1QXYA 1XGNA 1R5GA 4IF7A 3L7GA 4IKUA 1KP0A 1WL9A 3PKAA 2Q94A 2V3YA 1YVMA 5E5BA 2GG9A 3MR1A 5D6FA 4S01A 2BWUA 3MATA 4FUKA 4FLLA 2GZ5A 1B59A 2BWWA 1BN5A 2BHDA 4EGEA 1KQ9A 4JUQA 2V3XA 5CLSA 2GU4A 4U6ZA 4S00A 5CNXA 4PV4A 4FLIA 4RZYA 4U6JA 2BWXA 3BITA 2GA2A 2BWVA 3CB5A 5FCFA 1WY2A 4FKCA 2P9AA 4U70A 1BOAA 5CDVA 4IKRA 2GGCA 1WBQA 3IU8A 3D27A 3PKBA 4OOKA 1M35A 2BWYA 3MX6A 4U76A 2NQ6A 4B28A 2DFIA 3IG4A 4QR8A 2GU6A 4FO7A 5JHUA 1JAWA 2B3HA 2ADUA 3PKDA 2BWSA 1C27A 2B3LA 2GG0A 2Q93A 2EA2A 4IPAA 1C22A 4FLJA 4ZWOA 1XGOA 4U69A 1O0XA 4ZNGA 5CDEA 3S6BA 2EVMA 2IW2A 4ZWPA 4A6WA 5JI6A 4U71A 3FMRA 4PNCA 1WKMA 1CHMA 4ZWUA 1XNZA 2Q96A 2BHAA 1WN1A 3FMQA 4KM3A 4RGZ1 2P99A 2GG5A 1YW7A 4U1BA 2GG2A 2BN7A 4MATA 3Q6DA 4U6CA 3RORA 1PV9A 1WL6A 2BHBA 1A16A 1W7VA 4IDYA 5JFRA 3BIPA 1Y1NA 5CDLA 1YJ3A 2GGBA 5FCHA 4IKTA 1XGSA 1WLRA 1QXWA 4U73A 2BB7A 2Q95A 5D6EA 3CTZA 1MATA 1YW8A 3L24A 3FM3A 3RVAA 2G6PA 1QXZA 2MATA 2GG3A 5CE6A 4RZZA 1C23A 1R58A 4U75A 3TB5A 4S2TP 2OAZA 5CIKA 1B6AA 2Q92A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QZY A;  1C21 A;  2V3Z A;  4Z7M A;  4A6V A;  2HOW A;  2GU5 A;  4U6W A;  2B3K A;  4IU6 A;  4R60 A;  4S2R P;  2GG7 A;  1C24 A;  2V6C A;  2NQ7 A;  4U6E A;  2EA4 A;  1R5H A;  2BHC A;  3BIQ A;  2BWT A;  2Q8K A;  3IU7 A;  2ZSG A;  4HXX A;  3TAV A;  2BH3 A;  3CB6 A;  3IU9 A;  1XGM A;  2P98 A;  2OKN A;  3PKC A;  4IEC A;  2GG8 A;  4IKS A;  2GU7 A;  2GTX A;  2EVO A;  4FO8 A;  2EVC A;  1N51 A;  3PKE A;  1W2M A;  1KQ0 A;  1YW9 A;  4FLK A;  1QXY A;  1XGN A;  1R5G A;  4IF7 A;  3L7G A;  4IKU A;  1KP0 A;  1WL9 A;  3PKA A;  2Q94 A;  2V3Y A;  1YVM A;  5E5B A;  2GG9 A;  3MR1 A;  5D6F A;  4S01 A;  2BWU A;  3MAT A;  4FUK A;  4FLL A;  2GZ5 A;  1B59 A;  2BWW A;  1BN5 A;  2BHD A;  4EGE A;  1KQ9 A;  4JUQ A;  2V3X A;  5CLS A;  2GU4 A;  4U6Z A;  4S00 A;  5CNX A;  4PV4 A;  4FLI A;  4RZY A;  4U6J A;  2BWX A;  3BIT A;  2GA2 A;  2BWV A;  3CB5 A;  5FCF A;  1WY2 A;  4FKC A;  2P9A A;  4U70 A;  1BOA A;  5CDV A;  4IKR A;  2GGC A;  1WBQ A;  3IU8 A;  3D27 A;  3PKB A;  4OOK A;  1M35 A;  2BWY A;  3MX6 A;  4U76 A;  2NQ6 A;  4B28 A;  2DFI A;  3IG4 A;  4QR8 A;  2GU6 A;  4FO7 A;  5JHU A;  1JAW A;  2B3H A;  2ADU A;  3PKD A;  2BWS A;  1C27 A;  2B3L A;  2GG0 A;  2Q93 A;  2EA2 A;  4IPA A;  1C22 A;  4FLJ A;  4ZWO A;  1XGO A;  4U69 A;  1O0X A;  4ZNG A;  5CDE A;  3S6B A;  2EVM A;  2IW2 A;  4ZWP A;  4A6W A;  5JI6 A;  4U71 A;  3FMR A;  4PNC A;  1WKM A;  1CHM A;  4ZWU A;  1XNZ A;  2Q96 A;  2BHA A;  1WN1 A;  3FMQ A;  4KM3 A;  4RGZ 1;  2P99 A;  2GG5 A;  1YW7 A;  4U1B A;  2GG2 A;  2BN7 A;  4MAT A;  3Q6D A;  4U6C A;  3ROR A;  1PV9 A;  1WL6 A;  2BHB A;  1A16 A;  1W7V A;  4IDY A;  5JFR A;  3BIP A;  1Y1N A;  5CDL A;  1YJ3 A;  2GGB A;  5FCH A;  4IKT A;  1XGS A;  1WLR A;  1QXW A;  4U73 A;  2BB7 A;  2Q95 A;  5D6E A;  3CTZ A;  1MAT A;  1YW8 A;  3L24 A;  3FM3 A;  3RVA A;  2G6P A;  1QXZ A;  2MAT A;  2GG3 A;  5CE6 A;  4RZZ A;  1C23 A;  1R58 A;  4U75 A;  3TB5 A;  4S2T P;  2OAZ A;  5CIK A;  1B6A A;  2Q92 A; 
#chains in the Genus database with same CATH topology
 1QZY A;  1C21 A;  2V3Z A;  4Z7M A;  4A6V A;  2HOW A;  2GU5 A;  4U6W A;  2B3K A;  4IU6 A;  4R60 A;  4S2R P;  2GG7 A;  1C24 A;  2V6C A;  2NQ7 A;  4U6E A;  2EA4 A;  1R5H A;  2BHC A;  3BIQ A;  2BWT A;  2Q8K A;  3IU7 A;  2ZSG A;  4HXX A;  3TAV A;  2BH3 A;  3CB6 A;  3IU9 A;  1XGM A;  2P98 A;  2OKN A;  3PKC A;  4IEC A;  2GG8 A;  4IKS A;  2GU7 A;  2GTX A;  2EVO A;  4FO8 A;  2EVC A;  1N51 A;  3PKE A;  1W2M A;  1KQ0 A;  1YW9 A;  4FLK A;  1QXY A;  1XGN A;  1R5G A;  4IF7 A;  3L7G A;  4IKU A;  1KP0 A;  1WL9 A;  3PKA A;  2Q94 A;  2V3Y A;  1YVM A;  5E5B A;  2GG9 A;  3MR1 A;  5D6F A;  4S01 A;  2BWU A;  3MAT A;  4FUK A;  4FLL A;  2GZ5 A;  1B59 A;  2BWW A;  1BN5 A;  2BHD A;  4EGE A;  1KQ9 A;  4JUQ A;  2V3X A;  5CLS A;  2GU4 A;  4U6Z A;  4S00 A;  5CNX A;  4PV4 A;  4FLI A;  4RZY A;  4U6J A;  2BWX A;  3BIT A;  2GA2 A;  2BWV A;  3CB5 A;  5FCF A;  1WY2 A;  4FKC A;  2P9A A;  4U70 A;  1BOA A;  5CDV A;  4IKR A;  2GGC A;  1WBQ A;  3IU8 A;  3D27 A;  3PKB A;  4OOK A;  1M35 A;  2BWY A;  3MX6 A;  4U76 A;  2NQ6 A;  4B28 A;  2DFI A;  3IG4 A;  4QR8 A;  2GU6 A;  4FO7 A;  5JHU A;  1JAW A;  2B3H A;  2ADU A;  3PKD A;  2BWS A;  1C27 A;  2B3L A;  2GG0 A;  2Q93 A;  2EA2 A;  4IPA A;  1C22 A;  4FLJ A;  4ZWO A;  1XGO A;  4U69 A;  1O0X A;  4ZNG A;  5CDE A;  3S6B A;  2EVM A;  2IW2 A;  4ZWP A;  4A6W A;  5JI6 A;  4U71 A;  3FMR A;  4PNC A;  1WKM A;  1CHM A;  4ZWU A;  1XNZ A;  2Q96 A;  2BHA A;  1WN1 A;  3FMQ A;  4KM3 A;  4RGZ 1;  2P99 A;  2GG5 A;  1YW7 A;  4U1B A;  2GG2 A;  2BN7 A;  4MAT A;  3Q6D A;  4U6C A;  3ROR A;  1PV9 A;  1WL6 A;  2BHB A;  1A16 A;  1W7V A;  4IDY A;  5JFR A;  3BIP A;  1Y1N A;  5CDL A;  1YJ3 A;  2GGB A;  5FCH A;  4IKT A;  1XGS A;  1WLR A;  1QXW A;  4U73 A;  2BB7 A;  2Q95 A;  5D6E A;  3CTZ A;  1MAT A;  1YW8 A;  3L24 A;  3FM3 A;  3RVA A;  2G6P A;  1QXZ A;  2MAT A;  2GG3 A;  5CE6 A;  4RZZ A;  1C23 A;  1R58 A;  4U75 A;  3TB5 A;  4S2T P;  2OAZ A;  5CIK A;  1B6A A;  2Q92 A; 
#chains in the Genus database with same CATH homology
 1QZY A;  1C21 A;  2V3Z A;  4Z7M A;  4A6V A;  2HOW A;  2GU5 A;  4U6W A;  2B3K A;  4IU6 A;  4R60 A;  4S2R P;  2GG7 A;  1C24 A;  2V6C A;  2NQ7 A;  4U6E A;  2EA4 A;  1R5H A;  2BHC A;  3BIQ A;  2BWT A;  2Q8K A;  3IU7 A;  2ZSG A;  4HXX A;  3TAV A;  2BH3 A;  3CB6 A;  3IU9 A;  1XGM A;  2P98 A;  2OKN A;  3PKC A;  4IEC A;  2GG8 A;  4IKS A;  2GU7 A;  2GTX A;  2EVO A;  4FO8 A;  2EVC A;  1N51 A;  3PKE A;  1W2M A;  1KQ0 A;  1YW9 A;  4FLK A;  1QXY A;  1XGN A;  1R5G A;  4IF7 A;  3L7G A;  4IKU A;  1KP0 A;  1WL9 A;  3PKA A;  2Q94 A;  2V3Y A;  1YVM A;  5E5B A;  2GG9 A;  3MR1 A;  5D6F A;  4S01 A;  2BWU A;  3MAT A;  4FUK A;  4FLL A;  2GZ5 A;  1B59 A;  2BWW A;  1BN5 A;  2BHD A;  4EGE A;  1KQ9 A;  4JUQ A;  2V3X A;  5CLS A;  2GU4 A;  4U6Z A;  4S00 A;  5CNX A;  4PV4 A;  4FLI A;  4RZY A;  4U6J A;  2BWX A;  3BIT A;  2GA2 A;  2BWV A;  3CB5 A;  5FCF A;  1WY2 A;  4FKC A;  2P9A A;  4U70 A;  1BOA A;  5CDV A;  4IKR A;  2GGC A;  1WBQ A;  3IU8 A;  3D27 A;  3PKB A;  4OOK A;  1M35 A;  2BWY A;  3MX6 A;  4U76 A;  2NQ6 A;  4B28 A;  2DFI A;  3IG4 A;  4QR8 A;  2GU6 A;  4FO7 A;  5JHU A;  1JAW A;  2B3H A;  2ADU A;  3PKD A;  2BWS A;  1C27 A;  2B3L A;  2GG0 A;  2Q93 A;  2EA2 A;  4IPA A;  1C22 A;  4FLJ A;  4ZWO A;  1XGO A;  4U69 A;  1O0X A;  4ZNG A;  5CDE A;  3S6B A;  2EVM A;  2IW2 A;  4ZWP A;  4A6W A;  5JI6 A;  4U71 A;  3FMR A;  4PNC A;  1WKM A;  1CHM A;  4ZWU A;  1XNZ A;  2Q96 A;  2BHA A;  1WN1 A;  3FMQ A;  4KM3 A;  4RGZ 1;  2P99 A;  2GG5 A;  1YW7 A;  4U1B A;  2GG2 A;  2BN7 A;  4MAT A;  3Q6D A;  4U6C A;  3ROR A;  1PV9 A;  1WL6 A;  2BHB A;  1A16 A;  1W7V A;  4IDY A;  5JFR A;  3BIP A;  1Y1N A;  5CDL A;  1YJ3 A;  2GGB A;  5FCH A;  4IKT A;  1XGS A;  1WLR A;  1QXW A;  4U73 A;  2BB7 A;  2Q95 A;  5D6E A;  3CTZ A;  1MAT A;  1YW8 A;  3L24 A;  3FM3 A;  3RVA A;  2G6P A;  1QXZ A;  2MAT A;  2GG3 A;  5CE6 A;  4RZZ A;  1C23 A;  1R58 A;  4U75 A;  3TB5 A;  4S2T P;  2OAZ A;  5CIK A;  1B6A A;  2Q92 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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