2GIGA

Alteration of sequence specificity of the type ii restriction endonuclease hincii through an indirect readout mechanism
Total Genus 86
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
256
structure length
249
Chain Sequence
SFIKPIYQDINSILIGQKVKRPHAAGEPFEKLVYKFLKENLSDLTFKQYEYLNDLFMKNPAIIGHEARYKLFNSPTLLFLLSRGKAATENWSIENLFEEKQNDTADILLVKDQFYELLDVKTRNISKSAFAPNIISAYKLAQTCAKMIDNKEFDLFDINYLEVDWELNGEDLVCVSTSFAELFKSEPSELYINWAAAMQIQFHVRDLDQGFNGTREEWAKSYLKHFVTQAEQRAISMIDKFVKPFKKYI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase/dna
molecule keywords 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*GP*C)-3'
publication title Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 86
structure length 249
sequence length 256
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09226 Endonuc-HincII Restriction endonuclease HincII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.600.10 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease; Chain A DNA mismatch repair MutH/Restriction endonuclease, type II 2gigA00
3E41A 3E3YA 1AZ4A 1RVEA 2REUA 2GE5A 1STXA 1XHVA 2GIGA 1EV7A 2B0EA 2RVEA 1EO4A 1SUZA 1TW8A 1B96A 1TX3A 2B0DA 1BUAA 1RVBA 5HLKA 1B95A 1B97A 1EO3A 3E44A 2AORA 1XHUA 1AZ0A 1RVCA 1RV5A 2GIEA 2GIHA 4PXGA 3EBCA 1EOPA 1BSSA 2AZOA 1AZ3A 1BSUA 1EONA 1AZOA 1EOOA 1B94A 2AOQA 1SX5A 1SX8A 3E43A 2GIJA 1KC6A 2GIIA 4RVEA 2AUDA 1RVAA 1IAWA 3E40A 5F8AA 1BGBA 3E42A 3E45A
chains in the Genus database with same CATH superfamily
3E41A 3E3YA 1AZ4A 1RVEA 2REUA 2F03A 2GE5A 1STXA 1XHVA 2GIGA 1EV7A 2B0EA 1DMUA 1EO4A 1SUZA 2RVEA 2EZVA 1TW8A 1B96A 1TX3A 2B0DA 1BUAA 1RVBA 1B95A 1B97A 1EO3A 3E44A 2AORA 1XHUA 1AZ0A 1RVCA 1RV5A 2GIEA 2GIHA 3NDHA 4PXGA 3EBCA 1EOPA 1BSSA 2AZOA 1AZ3A 1BSUA 1EONA 1AZOA 1EOOA 1B94A 2AOQA 1SX5A 1SX8A 3E43A 2GIJA 1KC6A 2GIIA 4RVEA 2AUDA 1RVAA 1IAWA 3E40A 5F8AA 3E45A 1BGBA 3E42A 5HLKA
chains in the Genus database with same CATH topology
3E41A 3E3YA 1AZ4A 1RVEA 2REUA 2GE5A 1STXA 1XHVA 2GIGA 1EV7A 2B0EA 2RVEA 1EO4A 1SUZA 1TW8A 1B96A 1TX3A 2B0DA 1BUAA 1RVBA 5HLKA 1B95A 1B97A 1EO3A 3E44A 2AORA 1XHUA 1AZ0A 1RVCA 1RV5A 2GIEA 2GIHA 4PXGA 3EBCA 1EOPA 1BSSA 2AZOA 1AZ3A 1BSUA 1EONA 1AZOA 1EOOA 1B94A 2AOQA 1SX5A 1SX8A 3E43A 2GIJA 1KC6A 2GIIA 4RVEA 2AUDA 1RVAA 1IAWA 3E40A 5F8AA 1BGBA 3E42A 3E45A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E41 A;  3E3Y A;  1AZ4 A;  1RVE A;  2REU A;  2GE5 A;  1STX A;  1XHV A;  2GIG A;  1EV7 A;  2B0E A;  2RVE A;  1EO4 A;  1SUZ A;  1TW8 A;  1B96 A;  1TX3 A;  2B0D A;  1BUA A;  1RVB A;  5HLK A;  1B95 A;  1B97 A;  1EO3 A;  3E44 A;  2AOR A;  1XHU A;  1AZ0 A;  1RVC A;  1RV5 A;  2GIE A;  2GIH A;  4PXG A;  3EBC A;  1EOP A;  1BSS A;  2AZO A;  1AZ3 A;  1BSU A;  1EON A;  1AZO A;  1EOO A;  1B94 A;  2AOQ A;  1SX5 A;  1SX8 A;  3E43 A;  2GIJ A;  1KC6 A;  2GII A;  4RVE A;  2AUD A;  1RVA A;  1IAW A;  3E40 A;  5F8A A;  1BGB A;  3E42 A;  3E45 A; 
#chains in the Genus database with same CATH topology
 3E41 A;  3E3Y A;  1AZ4 A;  1RVE A;  2REU A;  2F03 A;  2GE5 A;  1STX A;  1XHV A;  2GIG A;  1EV7 A;  2B0E A;  1DMU A;  1EO4 A;  1SUZ A;  2RVE A;  2EZV A;  1TW8 A;  1B96 A;  1TX3 A;  2B0D A;  1BUA A;  1RVB A;  1B95 A;  1B97 A;  1EO3 A;  3E44 A;  2AOR A;  1XHU A;  1AZ0 A;  1RVC A;  1RV5 A;  2GIE A;  2GIH A;  3NDH A;  4PXG A;  3EBC A;  1EOP A;  1BSS A;  2AZO A;  1AZ3 A;  1BSU A;  1EON A;  1AZO A;  1EOO A;  1B94 A;  2AOQ A;  1SX5 A;  1SX8 A;  3E43 A;  2GIJ A;  1KC6 A;  2GII A;  4RVE A;  2AUD A;  1RVA A;  1IAW A;  3E40 A;  5F8A A;  3E45 A;  1BGB A;  3E42 A;  5HLK A; 
#chains in the Genus database with same CATH homology
 3E41 A;  3E3Y A;  1AZ4 A;  1RVE A;  2REU A;  2GE5 A;  1STX A;  1XHV A;  2GIG A;  1EV7 A;  2B0E A;  2RVE A;  1EO4 A;  1SUZ A;  1TW8 A;  1B96 A;  1TX3 A;  2B0D A;  1BUA A;  1RVB A;  5HLK A;  1B95 A;  1B97 A;  1EO3 A;  3E44 A;  2AOR A;  1XHU A;  1AZ0 A;  1RVC A;  1RV5 A;  2GIE A;  2GIH A;  4PXG A;  3EBC A;  1EOP A;  1BSS A;  2AZO A;  1AZ3 A;  1BSU A;  1EON A;  1AZO A;  1EOO A;  1B94 A;  2AOQ A;  1SX5 A;  1SX8 A;  3E43 A;  2GIJ A;  1KC6 A;  2GII A;  4RVE A;  2AUD A;  1RVA A;  1IAW A;  3E40 A;  5F8A A;  1BGB A;  3E42 A;  3E45 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...