2GIIA

Q138f hincii bound to cognate dna gttaac
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
257
structure length
238
Chain Sequence
SFIKPIYQDINSILIGQKEPFEKLVYKFLKENLSDLTFKQYEYLNDLFMKNPAIIGHEARYKLFNSPTLLFLLSRGKAATENWSIENLFEEKQNDTADILLVKDQFYELLDVKTRNISKSAFAPNIISAYKLAQTCAKMIDNKEFDLFDINYLEVDWELLVCVSTSFAELFKSEPSELYINWAAAMQIQFHVRDLDQGFNGTREEWAKSYLKHFVTQAEQRAISMIDKFVKPFKKYIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*GP*C)-3'
publication title Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 72
structure length 238
sequence length 257
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09226 Endonuc-HincII Restriction endonuclease HincII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.600.10 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease; Chain A DNA mismatch repair MutH/Restriction endonuclease, type II 2giiA00
3E40A 1BGBA 1B94A 2AZOA 1SX8A 4PXGA 1B96A 1AZ3A 2B0EA 3EBCA 1SX5A 2B0DA 5F8AA 2REUA 1BSSA 1RVCA 1EONA 3E42A 3E45A 1EV7A 2GE5A 1STXA 1EOPA 3E43A 5HLKA 1EOOA 1RVEA 1XHUA 2GIIA 2AUDA 2GIEA 2AORA 1XHVA 1RVAA 1AZ4A 1AZOA 1BUAA 2GIGA 1TW8A 1EO3A 3E44A 2GIJA 1B97A 2GIHA 1TX3A 1IAWA 1EO4A 3E3YA 1B95A 1SUZA 2RVEA 1RV5A 1RVBA 4RVEA 1BSUA 1KC6A 1AZ0A 3E41A 2AOQA
chains in the Genus database with same CATH superfamily
3E40A 1BGBA 1B94A 2EZVA 2AZOA 1DMUA 1SX8A 4PXGA 1B96A 1AZ3A 2B0EA 3EBCA 1SX5A 2B0DA 5F8AA 2REUA 1BSSA 1RVCA 1EONA 3E42A 3E45A 1EV7A 2GE5A 1STXA 1EOPA 3E43A 5HLKA 1EOOA 1RVEA 1XHUA 2GIIA 2AUDA 2GIEA 3NDHA 2AORA 1XHVA 1RVAA 1AZ4A 1AZOA 1BUAA 2GIGA 1TW8A 1EO3A 2F03A 3E44A 2GIJA 1B97A 2GIHA 1TX3A 1IAWA 1EO4A 3E3YA 1B95A 1SUZA 2RVEA 1RV5A 1RVBA 4RVEA 1BSUA 1KC6A 1AZ0A 3E41A 2AOQA
chains in the Genus database with same CATH topology
3E40A 1BGBA 1B94A 2AZOA 1SX8A 4PXGA 1B96A 1AZ3A 2B0EA 3EBCA 1SX5A 2B0DA 5F8AA 2REUA 1BSSA 1RVCA 1EONA 3E42A 3E45A 1EV7A 2GE5A 1STXA 1EOPA 3E43A 5HLKA 1EOOA 1RVEA 1XHUA 2GIIA 2AUDA 2GIEA 2AORA 1XHVA 1RVAA 1AZ4A 1AZOA 1BUAA 2GIGA 1TW8A 1EO3A 3E44A 2GIJA 1B97A 2GIHA 1TX3A 1IAWA 1EO4A 3E3YA 1B95A 1SUZA 2RVEA 1RV5A 1RVBA 4RVEA 1BSUA 1KC6A 1AZ0A 3E41A 2AOQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E40 A;  1BGB A;  1B94 A;  2AZO A;  1SX8 A;  4PXG A;  1B96 A;  1AZ3 A;  2B0E A;  3EBC A;  1SX5 A;  2B0D A;  5F8A A;  2REU A;  1BSS A;  1RVC A;  1EON A;  3E42 A;  3E45 A;  1EV7 A;  2GE5 A;  1STX A;  1EOP A;  3E43 A;  5HLK A;  1EOO A;  1RVE A;  1XHU A;  2GII A;  2AUD A;  2GIE A;  2AOR A;  1XHV A;  1RVA A;  1AZ4 A;  1AZO A;  1BUA A;  2GIG A;  1TW8 A;  1EO3 A;  3E44 A;  2GIJ A;  1B97 A;  2GIH A;  1TX3 A;  1IAW A;  1EO4 A;  3E3Y A;  1B95 A;  1SUZ A;  2RVE A;  1RV5 A;  1RVB A;  4RVE A;  1BSU A;  1KC6 A;  1AZ0 A;  3E41 A;  2AOQ A; 
#chains in the Genus database with same CATH topology
 3E40 A;  1BGB A;  1B94 A;  2EZV A;  2AZO A;  1DMU A;  1SX8 A;  4PXG A;  1B96 A;  1AZ3 A;  2B0E A;  3EBC A;  1SX5 A;  2B0D A;  5F8A A;  2REU A;  1BSS A;  1RVC A;  1EON A;  3E42 A;  3E45 A;  1EV7 A;  2GE5 A;  1STX A;  1EOP A;  3E43 A;  5HLK A;  1EOO A;  1RVE A;  1XHU A;  2GII A;  2AUD A;  2GIE A;  3NDH A;  2AOR A;  1XHV A;  1RVA A;  1AZ4 A;  1AZO A;  1BUA A;  2GIG A;  1TW8 A;  1EO3 A;  2F03 A;  3E44 A;  2GIJ A;  1B97 A;  2GIH A;  1TX3 A;  1IAW A;  1EO4 A;  3E3Y A;  1B95 A;  1SUZ A;  2RVE A;  1RV5 A;  1RVB A;  4RVE A;  1BSU A;  1KC6 A;  1AZ0 A;  3E41 A;  2AOQ A; 
#chains in the Genus database with same CATH homology
 3E40 A;  1BGB A;  1B94 A;  2AZO A;  1SX8 A;  4PXG A;  1B96 A;  1AZ3 A;  2B0E A;  3EBC A;  1SX5 A;  2B0D A;  5F8A A;  2REU A;  1BSS A;  1RVC A;  1EON A;  3E42 A;  3E45 A;  1EV7 A;  2GE5 A;  1STX A;  1EOP A;  3E43 A;  5HLK A;  1EOO A;  1RVE A;  1XHU A;  2GII A;  2AUD A;  2GIE A;  2AOR A;  1XHV A;  1RVA A;  1AZ4 A;  1AZO A;  1BUA A;  2GIG A;  1TW8 A;  1EO3 A;  3E44 A;  2GIJ A;  1B97 A;  2GIH A;  1TX3 A;  1IAW A;  1EO4 A;  3E3Y A;  1B95 A;  1SUZ A;  2RVE A;  1RV5 A;  1RVB A;  4RVE A;  1BSU A;  1KC6 A;  1AZ0 A;  3E41 A;  2AOQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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