2HJBD

Crystal structure of alcaligenes faecalis aadh in complex with p-methoxybenzylamine
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase
publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
total genus 25
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2hjbD00
2GC4B 4FANC 4Y5RC 4O1QC 2I0RD 2HKRD 2Q7QD 2H47B 2HKMD 2J56L 4L1QC 2MTAL 3SXTC 3PXWC 2HJ4D 4FA5C 2IUPD 2J55L 3ORVC 4FA4C 3SWSC 2MADL 2IAAB 2OK4D 2I0SD 4L3HC 3PXTC 2IURD 2IUVD 3C75L 2H3XB 3RLMC 3L4OC 4FAVC 2HJBD 3SVWC 4FB1C 2GC7B 2OK6D 3SLEC 4FA1C 4K3IC 2OIZD 2AGLD 3RN1C 2AGZD 3RN0C 2OJYD 2BBKL 2AGYD 1MG3B 2AGXD 2HXCD 2IUQD 1MAEL 2I0TD 3L4MC 3SJLC 3PXSC 4FA9C 2AH1D 1MG2B 1MDAL 1MAFL 2AH0D 2J57K 4L3GC 2AGWD 3RMZC
chains in the Genus database with same CATH superfamily
2GC4B 4FANC 4Y5RC 4O1QC 2I0RD 2HKRD 2Q7QD 2H47B 2HKMD 2J56L 4L1QC 2MTAL 3SXTC 3PXWC 2HJ4D 4FA5C 2IUPD 2J55L 3ORVC 4FA4C 3SWSC 2MADL 2IAAB 2OK4D 2I0SD 4L3HC 3PXTC 2IURD 2IUVD 3C75L 2H3XB 3RLMC 3L4OC 4FAVC 2HJBD 3SVWC 4FB1C 2GC7B 2OK6D 3SLEC 4FA1C 4K3IC 2OIZD 2AGLD 3RN1C 2AGZD 3RN0C 2OJYD 2BBKL 2AGYD 1MG3B 2AGXD 2HXCD 2IUQD 1MAEL 2I0TD 3L4MC 3SJLC 3PXSC 4FA9C 2AH1D 1MG2B 1MDAL 1MAFL 2AH0D 2J57K 4L3GC 2AGWD 3RMZC
chains in the Genus database with same CATH topology
2GC4B 4FANC 4Y5RC 4O1QC 2I0RD 2HKRD 2Q7QD 2H47B 2HKMD 2J56L 4L1QC 2MTAL 3SXTC 3PXWC 2HJ4D 4FA5C 2IUPD 2J55L 3ORVC 4FA4C 3SWSC 2MADL 2IAAB 2OK4D 2I0SD 4L3HC 3PXTC 2IURD 2IUVD 3C75L 2H3XB 3RLMC 3L4OC 4FAVC 2HJBD 3SVWC 4FB1C 2GC7B 2OK6D 3SLEC 4FA1C 4K3IC 2OIZD 2AGLD 3RN1C 2AGZD 3RN0C 2OJYD 2BBKL 2AGYD 1MG3B 2AGXD 2HXCD 2IUQD 1MAEL 2I0TD 3L4MC 3SJLC 3PXSC 4FA9C 2AH1D 1MG2B 1MDAL 1MAFL 2AH0D 2J57K 4L3GC 2AGWD 3RMZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GC4 B;  4FAN C;  4Y5R C;  4O1Q C;  2I0R D;  2HKR D;  2Q7Q D;  2H47 B;  2HKM D;  2J56 L;  4L1Q C;  2MTA L;  3SXT C;  3PXW C;  2HJ4 D;  4FA5 C;  2IUP D;  2J55 L;  3ORV C;  4FA4 C;  3SWS C;  2MAD L;  2IAA B;  2OK4 D;  2I0S D;  4L3H C;  3PXT C;  2IUR D;  2IUV D;  3C75 L;  2H3X B;  3RLM C;  3L4O C;  4FAV C;  2HJB D;  3SVW C;  4FB1 C;  2GC7 B;  2OK6 D;  3SLE C;  4FA1 C;  4K3I C;  2OIZ D;  2AGL D;  3RN1 C;  2AGZ D;  3RN0 C;  2OJY D;  2BBK L;  2AGY D;  1MG3 B;  2AGX D;  2HXC D;  2IUQ D;  1MAE L;  2I0T D;  3L4M C;  3SJL C;  3PXS C;  4FA9 C;  2AH1 D;  1MG2 B;  1MDA L;  1MAF L;  2AH0 D;  2J57 K;  4L3G C;  2AGW D;  3RMZ C; 
#chains in the Genus database with same CATH topology
 2GC4 B;  4FAN C;  4Y5R C;  4O1Q C;  2I0R D;  2HKR D;  2Q7Q D;  2H47 B;  2HKM D;  2J56 L;  4L1Q C;  2MTA L;  3SXT C;  3PXW C;  2HJ4 D;  4FA5 C;  2IUP D;  2J55 L;  3ORV C;  4FA4 C;  3SWS C;  2MAD L;  2IAA B;  2OK4 D;  2I0S D;  4L3H C;  3PXT C;  2IUR D;  2IUV D;  3C75 L;  2H3X B;  3RLM C;  3L4O C;  4FAV C;  2HJB D;  3SVW C;  4FB1 C;  2GC7 B;  2OK6 D;  3SLE C;  4FA1 C;  4K3I C;  2OIZ D;  2AGL D;  3RN1 C;  2AGZ D;  3RN0 C;  2OJY D;  2BBK L;  2AGY D;  1MG3 B;  2AGX D;  2HXC D;  2IUQ D;  1MAE L;  2I0T D;  3L4M C;  3SJL C;  3PXS C;  4FA9 C;  2AH1 D;  1MG2 B;  1MDA L;  1MAF L;  2AH0 D;  2J57 K;  4L3G C;  2AGW D;  3RMZ C; 
#chains in the Genus database with same CATH homology
 2GC4 B;  4FAN C;  4Y5R C;  4O1Q C;  2I0R D;  2HKR D;  2Q7Q D;  2H47 B;  2HKM D;  2J56 L;  4L1Q C;  2MTA L;  3SXT C;  3PXW C;  2HJ4 D;  4FA5 C;  2IUP D;  2J55 L;  3ORV C;  4FA4 C;  3SWS C;  2MAD L;  2IAA B;  2OK4 D;  2I0S D;  4L3H C;  3PXT C;  2IUR D;  2IUV D;  3C75 L;  2H3X B;  3RLM C;  3L4O C;  4FAV C;  2HJB D;  3SVW C;  4FB1 C;  2GC7 B;  2OK6 D;  3SLE C;  4FA1 C;  4K3I C;  2OIZ D;  2AGL D;  3RN1 C;  2AGZ D;  3RN0 C;  2OJY D;  2BBK L;  2AGY D;  1MG3 B;  2AGX D;  2HXC D;  2IUQ D;  1MAE L;  2I0T D;  3L4M C;  3SJL C;  3PXS C;  4FA9 C;  2AH1 D;  1MG2 B;  1MDA L;  1MAF L;  2AH0 D;  2J57 K;  4L3G C;  2AGW D;  3RMZ C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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