2J3RA

The crystal structure of the bet3-trs31 heterodimer.
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
162
structure length
158
Chain Sequence
ESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTKGDGVTEIRMRFIRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport
molecule keywords TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3
publication title The Architecture of the Multisubunit Trapp I Complex Suggests a Model for Vesicle Tethering.
pubmed doi rcsb
source organism Mus musculus
total genus 42
structure length 158
sequence length 162
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04051 TRAPP Transport protein particle (TRAPP) component
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1380.20 Alpha Beta 2-Layer Sandwich Muramoyl-pentapeptide Carboxypeptidase; domain 2 Trafficking protein particle complex subunit 3 2j3rA00
2OSDA 2OSOA 2J3RB 1SZ7A 2J3RA 1WC8A 2BJNA 2CFHC 1WC9A 2CFHA 3KXCC 2PWNA 3KXCA 2C0JA 2C0JB 3CUEB 2J3WB 2J3TB 3CUED 2J3WD 2J3TA 3NJCA
chains in the Genus database with same CATH superfamily
2OSDA 2OSOA 1VHHA 3N1GA 3N1QA 4C4MA 2J3RB 4C4NA 1LBUA 3MXWA 1SZ7A 2J3RA 2WG3A 3M1NA 4OAKA 2VO9A 2IBGE 1WC8A 4MPHA 4MURA 2WFQA 2BJNA 3N1OA 1R44A 2CFHC 1WC9A 1U10A 2CFHA 4OX3A 3KXCC 4MUTA 2PWNA 3KXCA 3D1MA 3K7IB 4JIDA 3K7GB 3HO5H 4MUQA 3N1RA 4NT9A 4D0YA 4OX5A 2C0JA 2C0JB 4OXDA 3K7JB 3N1MB 2WFRA 3N1PB 3CUEB 2J3WB 2J3TB 3CUED 1TZPA 2J3WD 2WFXA 2J3TA 4F78A 5HNMA 3N1FA 3NJCA 4MUSA 3K7HB 2WG4A
chains in the Genus database with same CATH topology
2OSDA 2OSOA 2J3RB 1SZ7A 2J3RA 1WC8A 2BJNA 2CFHC 1WC9A 2CFHA 3KXCC 2PWNA 3KXCA 2C0JA 2C0JB 3CUEB 2J3WB 2J3TB 3CUED 2J3WD 2J3TA 3NJCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OSD A;  2OSO A;  2J3R B;  1SZ7 A;  2J3R A;  1WC8 A;  2BJN A;  2CFH C;  1WC9 A;  2CFH A;  3KXC C;  2PWN A;  3KXC A;  2C0J A;  2C0J B;  3CUE B;  2J3W B;  2J3T B;  3CUE D;  2J3W D;  2J3T A;  3NJC A; 
#chains in the Genus database with same CATH topology
 2OSD A;  2OSO A;  1VHH A;  3N1G A;  3N1Q A;  4C4M A;  2J3R B;  4C4N A;  1LBU A;  3MXW A;  1SZ7 A;  2J3R A;  2WG3 A;  3M1N A;  4OAK A;  2VO9 A;  2IBG E;  1WC8 A;  4MPH A;  4MUR A;  2WFQ A;  2BJN A;  3N1O A;  1R44 A;  2CFH C;  1WC9 A;  1U10 A;  2CFH A;  4OX3 A;  3KXC C;  4MUT A;  2PWN A;  3KXC A;  3D1M A;  3K7I B;  4JID A;  3K7G B;  3HO5 H;  4MUQ A;  3N1R A;  4NT9 A;  4D0Y A;  4OX5 A;  2C0J A;  2C0J B;  4OXD A;  3K7J B;  3N1M B;  2WFR A;  3N1P B;  3CUE B;  2J3W B;  2J3T B;  3CUE D;  1TZP A;  2J3W D;  2WFX A;  2J3T A;  4F78 A;  5HNM A;  3N1F A;  3NJC A;  4MUS A;  3K7H B;  2WG4 A; 
#chains in the Genus database with same CATH homology
 2OSD A;  2OSO A;  2J3R B;  1SZ7 A;  2J3R A;  1WC8 A;  2BJN A;  2CFH C;  1WC9 A;  2CFH A;  3KXC C;  2PWN A;  3KXC A;  2C0J A;  2C0J B;  3CUE B;  2J3W B;  2J3T B;  3CUE D;  2J3W D;  2J3T A;  3NJC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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