2J56L

X-ray reduced paraccocus denitrificans methylamine dehydrogenase n- semiquinone in complex with amicyanin.
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords AMICYANIN
publication title Tracking X-Ray-Derived Redox Changes in Crystals of a Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry.
pubmed doi rcsb
total genus 31
structure length 124
sequence length 125
chains with identical sequence M
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 2006-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2j56L00
3RMZC 2H47B 2IUPD 2AGXD 2J56L 4O1QC 2OK6D 4FA4C 2AGYD 3SVWC 2HJ4D 2IURD 2IUVD 3PXSC 2AGLD 3C75L 2Q7QD 2HJBD 2OK4D 2I0RD 4FA9C 3RLMC 2AGZD 1MAEL 2J57K 3PXWC 2IAAB 3RN0C 3SLEC 4FANC 4FAVC 2GC4B 2MADL 2I0SD 2H3XB 3RN1C 2GC7B 3SJLC 3L4OC 4FB1C 2AH1D 3L4MC 1MAFL 2AH0D 3ORVC 4FA5C 2J55L 3PXTC 1MG3B 2BBKL 2I0TD 4L3HC 2HXCD 2AGWD 4K3IC 2IUQD 2OIZD 3SWSC 3SXTC 1MDAL 1MG2B 4L1QC 4FA1C 4L3GC 2OJYD 4Y5RC 2HKMD 2HKRD 2MTAL
chains in the Genus database with same CATH superfamily
3RMZC 2H47B 2IUPD 2AGXD 2J56L 4O1QC 2OK6D 4FA4C 2AGYD 3SVWC 2HJ4D 2IURD 2IUVD 3PXSC 2AGLD 3C75L 2Q7QD 2HJBD 2OK4D 2I0RD 4FA9C 3RLMC 2AGZD 1MAEL 2J57K 3PXWC 2IAAB 3RN0C 3SLEC 4FANC 4FAVC 2GC4B 2MADL 2I0SD 2H3XB 3RN1C 2GC7B 3SJLC 3L4OC 4FB1C 2AH1D 3L4MC 1MAFL 2AH0D 3ORVC 4FA5C 2J55L 3PXTC 1MG3B 2BBKL 2I0TD 4L3HC 2HXCD 2AGWD 4K3IC 2IUQD 2OIZD 3SWSC 3SXTC 1MDAL 1MG2B 4L1QC 4FA1C 4L3GC 2OJYD 4Y5RC 2HKMD 2HKRD 2MTAL
chains in the Genus database with same CATH topology
3RMZC 2H47B 2IUPD 2AGXD 2J56L 4O1QC 2OK6D 4FA4C 2AGYD 3SVWC 2HJ4D 2IURD 2IUVD 3PXSC 2AGLD 3C75L 2Q7QD 2HJBD 2OK4D 2I0RD 4FA9C 3RLMC 2AGZD 1MAEL 2J57K 3PXWC 2IAAB 3RN0C 3SLEC 4FANC 4FAVC 2GC4B 2MADL 2I0SD 2H3XB 3RN1C 2GC7B 3SJLC 3L4OC 4FB1C 2AH1D 3L4MC 1MAFL 2AH0D 3ORVC 4FA5C 2J55L 3PXTC 1MG3B 2BBKL 2I0TD 4L3HC 2HXCD 2AGWD 4K3IC 2IUQD 2OIZD 3SWSC 3SXTC 1MDAL 1MG2B 4L1QC 4FA1C 4L3GC 2OJYD 4Y5RC 2HKMD 2HKRD 2MTAL
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RMZ C;  2H47 B;  2IUP D;  2AGX D;  2J56 L;  4O1Q C;  2OK6 D;  4FA4 C;  2AGY D;  3SVW C;  2HJ4 D;  2IUR D;  2IUV D;  3PXS C;  2AGL D;  3C75 L;  2Q7Q D;  2HJB D;  2OK4 D;  2I0R D;  4FA9 C;  3RLM C;  2AGZ D;  1MAE L;  2J57 K;  3PXW C;  2IAA B;  3RN0 C;  3SLE C;  4FAN C;  4FAV C;  2GC4 B;  2MAD L;  2I0S D;  2H3X B;  3RN1 C;  2GC7 B;  3SJL C;  3L4O C;  4FB1 C;  2AH1 D;  3L4M C;  1MAF L;  2AH0 D;  3ORV C;  4FA5 C;  2J55 L;  3PXT C;  1MG3 B;  2BBK L;  2I0T D;  4L3H C;  2HXC D;  2AGW D;  4K3I C;  2IUQ D;  2OIZ D;  3SWS C;  3SXT C;  1MDA L;  1MG2 B;  4L1Q C;  4FA1 C;  4L3G C;  2OJY D;  4Y5R C;  2HKM D;  2HKR D;  2MTA L; 
#chains in the Genus database with same CATH topology
 3RMZ C;  2H47 B;  2IUP D;  2AGX D;  2J56 L;  4O1Q C;  2OK6 D;  4FA4 C;  2AGY D;  3SVW C;  2HJ4 D;  2IUR D;  2IUV D;  3PXS C;  2AGL D;  3C75 L;  2Q7Q D;  2HJB D;  2OK4 D;  2I0R D;  4FA9 C;  3RLM C;  2AGZ D;  1MAE L;  2J57 K;  3PXW C;  2IAA B;  3RN0 C;  3SLE C;  4FAN C;  4FAV C;  2GC4 B;  2MAD L;  2I0S D;  2H3X B;  3RN1 C;  2GC7 B;  3SJL C;  3L4O C;  4FB1 C;  2AH1 D;  3L4M C;  1MAF L;  2AH0 D;  3ORV C;  4FA5 C;  2J55 L;  3PXT C;  1MG3 B;  2BBK L;  2I0T D;  4L3H C;  2HXC D;  2AGW D;  4K3I C;  2IUQ D;  2OIZ D;  3SWS C;  3SXT C;  1MDA L;  1MG2 B;  4L1Q C;  4FA1 C;  4L3G C;  2OJY D;  4Y5R C;  2HKM D;  2HKR D;  2MTA L; 
#chains in the Genus database with same CATH homology
 3RMZ C;  2H47 B;  2IUP D;  2AGX D;  2J56 L;  4O1Q C;  2OK6 D;  4FA4 C;  2AGY D;  3SVW C;  2HJ4 D;  2IUR D;  2IUV D;  3PXS C;  2AGL D;  3C75 L;  2Q7Q D;  2HJB D;  2OK4 D;  2I0R D;  4FA9 C;  3RLM C;  2AGZ D;  1MAE L;  2J57 K;  3PXW C;  2IAA B;  3RN0 C;  3SLE C;  4FAN C;  4FAV C;  2GC4 B;  2MAD L;  2I0S D;  2H3X B;  3RN1 C;  2GC7 B;  3SJL C;  3L4O C;  4FB1 C;  2AH1 D;  3L4M C;  1MAF L;  2AH0 D;  3ORV C;  4FA5 C;  2J55 L;  3PXT C;  1MG3 B;  2BBK L;  2I0T D;  4L3H C;  2HXC D;  2AGW D;  4K3I C;  2IUQ D;  2OIZ D;  3SWS C;  3SXT C;  1MDA L;  1MG2 B;  4L1Q C;  4FA1 C;  4L3G C;  2OJY D;  4Y5R C;  2HKM D;  2HKR D;  2MTA L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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