The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
116
|
sequence length |
366
|
structure length |
365
|
Chain Sequence |
AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHITQQEPKRVG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Gene Cluster for Agmatine Catabolism of Enterococcus Faecalis: Study of Recombinant Putrescine Transcarbamylase and Agmatine Deiminase and a Snapshot of Agmatine Deiminase Catalyzing its Reaction.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Enterococcus faecalis
|
| molecule keywords |
AGMATINE DEIMINASE
|
| total genus |
116
|
| structure length |
365
|
| sequence length |
366
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
3.5.3.12: Agmatine deiminase. |
| pdb deposition date | 2007-01-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04371 | PAD_porph | Porphyromonas-type peptidyl-arginine deiminase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 5-stranded Propeller | L-arginine/glycine Amidinotransferase; Chain A | L-arginine/glycine Amidinotransferase; Chain A |
#chains in the Genus database with same CATH superfamily 3HVM A; 4N2H A; 1JDW A; 2CI3 A; 1G61 A; 4N2L A; 2DEY X; 5M3Q A; 1WDA A; 7JDW A; 2JDW A; 1VKP A; 2ACI A; 4N2N A; 2CMU A; 4N2B A; 4BOF A; 4N22 A; 2Q3U A; 3I2E A; 4YTG A; 3B1T A; 2CI7 A; 2CI4 A; 4N24 A; 4E4J A; 3B1U A; 1WD9 A; 5JDW A; 2DEW X; 4DKT A; 4X8C A; 3JDW A; 2AAF A; 3H7C X; 3RHY A; 4N20 A; 4JDW A; 4N2A A; 5HP5 A; 4YT9 A; 4N2I A; 2DW5 A; 4YTB A; 4N28 A; 2C6Z A; 3BPB A; 1LXY A; 3P8P A; 3H7K A; 2JER A; 2CI6 A; 2JAI A; 4N2E A; 9JDW A; 1G62 A; 1H70 A; 2CI5 A; 4N2F A; 3I4A A; 3APM A; 2A9G A; 4N26 A; 5AN9 I; 1JDX A; 5AK8 A; 1RXX A; 2JDX A; 4X8G A; 1ZBR A; 3APN A; 4N2M A; 6JDW A; 2CI1 A; 4N2K A; 2ABR A; 1XKN A; 1WD8 A; 4N2D A; 1S9R A; 4N2C A; 5AK7 A; 3P8E A; 8JDW A; 4N25 A; 1BWD A; 2JAJ A; 2DEX X; 4N2G A; 2EWO A; #chains in the Genus database with same CATH topology 3HVM A; 4N2H A; 1JDW A; 2CI3 A; 1G61 A; 4N2L A; 2DEY X; 5M3Q A; 1WDA A; 7JDW A; 2JDW A; 1VKP A; 2ACI A; 4N2N A; 2CMU A; 4N2B A; 4BOF A; 4N22 A; 2Q3U A; 1YNH A; 3I2E A; 4YTG A; 3B1T A; 2CI7 A; 2CI4 A; 4N24 A; 4E4J A; 3B1U A; 1WD9 A; 5JDW A; 2DEW X; 4DKT A; 4X8C A; 3JDW A; 2AAF A; 3H7C X; 3RHY A; 4N20 A; 4JDW A; 4N2A A; 5HP5 A; 4YT9 A; 4N2I A; 2DW5 A; 4YTB A; 4N28 A; 2C6Z A; 3BPB A; 1LXY A; 3P8P A; 3H7K A; 2JER A; 2CI6 A; 2JAI A; 4N2E A; 1YNI A; 1G62 A; 1H70 A; 9JDW A; 2CI5 A; 4N2F A; 3I4A A; 3APM A; 2A9G A; 4N26 A; 5AN9 I; 1JDX A; 5AK8 A; 1RXX A; 2JDX A; 4X8G A; 1ZBR A; 3APN A; 1YNF A; 4N2M A; 6JDW A; 2CI1 A; 4N2K A; 2ABR A; 1XKN A; 1WD8 A; 4N2D A; 1S9R A; 4N2C A; 5AK7 A; 3P8E A; 8JDW A; 4N25 A; 1BWD A; 2JAJ A; 2DEX X; 4N2G A; 2EWO A; #chains in the Genus database with same CATH homology 3HVM A; 4N2H A; 1JDW A; 2CI3 A; 1G61 A; 4N2L A; 2DEY X; 5M3Q A; 1WDA A; 7JDW A; 2JDW A; 1VKP A; 2ACI A; 4N2N A; 2CMU A; 4N2B A; 4BOF A; 4N22 A; 2Q3U A; 3I2E A; 4YTG A; 3B1T A; 2CI7 A; 2CI4 A; 4N24 A; 4E4J A; 3B1U A; 1WD9 A; 5JDW A; 2DEW X; 4DKT A; 4X8C A; 3JDW A; 2AAF A; 3H7C X; 3RHY A; 4N20 A; 4JDW A; 4N2A A; 5HP5 A; 4YT9 A; 4N2I A; 2DW5 A; 4YTB A; 4N28 A; 2C6Z A; 3BPB A; 1LXY A; 3P8P A; 3H7K A; 2JER A; 2CI6 A; 2JAI A; 4N2E A; 9JDW A; 1G62 A; 1H70 A; 2CI5 A; 4N2F A; 3I4A A; 3APM A; 2A9G A; 4N26 A; 5AN9 I; 1JDX A; 5AK8 A; 1RXX A; 2JDX A; 4X8G A; 1ZBR A; 3APN A; 4N2M A; 6JDW A; 2CI1 A; 4N2K A; 2ABR A; 1XKN A; 1WD8 A; 4N2D A; 1S9R A; 4N2C A; 5AK7 A; 3P8E A; 8JDW A; 4N25 A; 1BWD A; 2JAJ A; 2DEX X; 4N2G A; 2EWO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
