2JVEA

Solution structure of the extracellular domain of prod1, a protein implicated in proximodistal identity during amphibian limb regeneration
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
71
structure length
71
Chain Sequence
MALKCFTRNGDDRTVTTCAEEQTRCLFVQLPYSEIQECKTVQQCAEVLEEVTAIGYPAKCCCEDLCNRSEQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Prod 1
publication title Solution structure and phylogenetics of Prod1, a member of the three-finger protein superfamily implicated in salamander limb regeneration.
pubmed doi rcsb
source organism Notophthalmus viridescens
total genus 21
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2007-09-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2jveA00
2H62C 1TGXA 2X8BB 2H64B 4P7UA 3BT1U 1JGKA 1UG4A 2MUPA 3U74U 1CODA 1FASA 3BT2U 1XT3A 3U73U 1NORA 4FAOC 1IJCA 1F94A 2PJYB 4RUDA 1CHVS 1NYSA 1QKEA 2MFAA 1ERAA 1NTNA 2H7ZB 2QJBC 1CDQA 1F8UB 4DO8A 1QM7A 1RGJA 1TFSA 1MAHF 1LXGA 3HH7A 3KFDI 2MUOA 1CVOA 2NBTA 2L03A 2HLQA 1V6PA 1ZADA 1IKCA 3NEQA 1ONJA 1CREA 1ES7B 1CXOA 2H7ZA 2L5SA 2MJYA 2UX2A 1CRFA 1HOYA 1KFHA 1NYUA 4HQPF 1KBSA 1CXNA 1CDTA 3PLCA 2J8BA 1BTEA 1IDHA 5IMYC 6EBXA 1TXAA 1HC9B 3ERAA 1CB9A 3EBXA 2JQPA 1IDGA 3QB4B 1B41B 1LX5B 2BHIA 2GOOC 1FFJA 1KBTA 2MHYA 1YWHA 2QC1A 1NXBA 1FF4A 2CTXA 4BDTB 1KC4A 2CRSA 2H62D 1KXIA 1JBDA 2BTXA 1NTXA 2MJ4A 2H64C 4OM4A 1KBAA 4BIKB 2QJ9C 4OM5A 1QKDA 1KS6A 1IDIA 1VB0A 1HC9A 2FD6U 5DZ5A 5EBXA 5DU1A 1KU6B 1W6BA 2PJYC 1I02A 4UY2C 4FAOE 1JE9A 1TXBA 2MJ0A 3FEVA 4IYEA 2H5FA 2CCXA 1NEAA 1KL8A 1IQ9A 1M9ZA 1IDLA 5IMTD 1DRSA 4XJJA 1RL5A 3LAQU 1H0JA 2QJAC 2CDXA 1HAAA 2H8UA 2OFSA 1PLOA 4LFTA 2HLRA 3NH7A 4AEAA 1G6MA 1IK8A 2CRTA 1LSIA 1FSSB 1REWC 3NDSA 1L4WA 1CDSA 4QTIU 2K3GA 2JVEA 2I9BE 1CCQA 2LA1A 3KFDE 2VLWA 2GOOB 1COEA 3EVSC 5DO6A 1ABTA 1LJZA 1ERGA 1CTXA 1HAJA 2ERAA 2ABXA 1MR6A 2LCRA 1CDRA 1BXPA 1LXHA 1KTZB 3VTSA 4EY8B 1FSCA 1S4YA 2N99A 2UWRA 4ZQYA 1FRAA
chains in the Genus database with same CATH superfamily
2H62C 1TGXA 2X8BB 2H64B 4P7UA 3BT1U 1JGKA 1UG4A 2MUPA 3U74U 1CODA 1FASA 3BT2U 1XT3A 3U73U 1NORA 4FAOC 1IJCA 1F94A 2PJYB 4RUDA 1CHVS 1NYSA 1QKEA 2MFAA 1ERAA 1NTNA 2H7ZB 2QJBC 1CDQA 1F8UB 4DO8A 1QM7A 1RGJA 1TFSA 1MAHF 1LXGA 3HH7A 3KFDI 2MUOA 1CVOA 2NBTA 2L03A 2HLQA 1V6PA 1ZADA 1IKCA 3NEQA 1ONJA 1CREA 1ES7B 1CXOA 2H7ZA 2L5SA 2MJYA 2UX2A 1CRFA 1HOYA 1KFHA 1NYUA 4HQPF 1KBSA 1CXNA 1CDTA 3PLCA 2J8BA 1BTEA 1IDHA 5IMYC 6EBXA 1TXAA 1HC9B 3ERAA 1CB9A 3EBXA 2JQPA 1IDGA 3QB4B 1B41B 1LX5B 2BHIA 2GOOC 1FFJA 1KBTA 2MHYA 1YWHA 2QC1A 1NXBA 1FF4A 2CTXA 4BDTB 1KC4A 2CRSA 2H62D 1KXIA 1JBDA 2BTXA 1NTXA 2MJ4A 2H64C 4OM4A 1KBAA 4BIKB 2QJ9C 4OM5A 1QKDA 1KS6A 1IDIA 1VB0A 1HC9A 2FD6U 5DZ5A 5EBXA 5DU1A 1KU6B 1W6BA 2PJYC 1I02A 4UY2C 4FAOE 1JE9A 1TXBA 2MJ0A 3FEVA 4IYEA 2H5FA 2CCXA 1NEAA 1KL8A 1IQ9A 1M9ZA 1IDLA 5IMTD 1DRSA 4XJJA 1RL5A 3LAQU 1H0JA 2QJAC 2CDXA 1HAAA 2H8UA 2OFSA 1PLOA 4LFTA 2HLRA 3NH7A 4AEAA 1G6MA 1IK8A 2CRTA 1LSIA 1FSSB 1REWC 3NDSA 1L4WA 1CDSA 4QTIU 2K3GA 2JVEA 2I9BE 1CCQA 2LA1A 3KFDE 2VLWA 2GOOB 1COEA 3EVSC 4KSNA 5DO6A 1ABTA 1LJZA 1ERGA 1CTXA 1HAJA 2ERAA 2ABXA 1MR6A 2LCRA 1CDRA 1BXPA 1LXHA 1KTZB 3VTSA 4EY8B 1FSCA 1S4YA 2N99A 2UWRA 4ZQYA 1FRAA
chains in the Genus database with same CATH topology
2H62C 1TGXA 2X8BB 2H64B 4P7UA 3BT1U 1JGKA 1UG4A 2MUPA 3U74U 1CODA 1FASA 3BT2U 1XT3A 3U73U 1NORA 4FAOC 1IJCA 1F94A 2PJYB 4RUDA 1CHVS 1NYSA 1QKEA 2MFAA 1ERAA 1NTNA 2H7ZB 2QJBC 1CDQA 1F8UB 4DO8A 1QM7A 1RGJA 1TFSA 1MAHF 1LXGA 3HH7A 3KFDI 2MUOA 1CVOA 2NBTA 2L03A 2HLQA 1V6PA 1ZADA 1IKCA 3NEQA 1ONJA 1CREA 1ES7B 1CXOA 2H7ZA 2L5SA 2MJYA 2UX2A 1CRFA 1HOYA 1KFHA 1NYUA 4HQPF 1KBSA 1CXNA 1CDTA 3PLCA 2J8BA 1BTEA 1IDHA 5IMYC 6EBXA 1TXAA 1HC9B 3ERAA 1CB9A 3EBXA 2JQPA 1IDGA 3QB4B 1B41B 1LX5B 2BHIA 2GOOC 1FFJA 1KBTA 2MHYA 1YWHA 2QC1A 1NXBA 1FF4A 2CTXA 4BDTB 1KC4A 2CRSA 2H62D 1KXIA 1JBDA 2BTXA 1NTXA 2MJ4A 2H64C 4OM4A 1KBAA 4BIKB 2QJ9C 4OM5A 1QKDA 1KS6A 1IDIA 1VB0A 1HC9A 2FD6U 5DZ5A 5EBXA 5DU1A 1KU6B 1W6BA 2PJYC 1I02A 4UY2C 4FAOE 1JE9A 1TXBA 2MJ0A 3FEVA 4IYEA 2H5FA 2CCXA 1NEAA 1KL8A 1IQ9A 1M9ZA 1IDLA 5IMTD 1DRSA 4XJJA 1RL5A 3LAQU 1H0JA 2QJAC 2CDXA 1HAAA 2H8UA 2OFSA 1PLOA 4LFTA 2HLRA 3NH7A 4AEAA 1G6MA 1IK8A 2CRTA 1LSIA 1FSSB 1REWC 3NDSA 1L4WA 1CDSA 4QTIU 2K3GA 2JVEA 2I9BE 1CCQA 2LA1A 3KFDE 2VLWA 2GOOB 1COEA 3EVSC 4KSNA 5DO6A 1ABTA 1LJZA 1ERGA 1CTXA 1HAJA 2ERAA 2ABXA 1MR6A 2LCRA 1CDRA 1BXPA 1LXHA 1KTZB 3VTSA 4EY8B 1FSCA 1S4YA 2N99A 2UWRA 4ZQYA 1FRAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H62 C;  1TGX A;  2X8B B;  2H64 B;  4P7U A;  3BT1 U;  1JGK A;  1UG4 A;  2MUP A;  3U74 U;  1COD A;  1FAS A;  3BT2 U;  1XT3 A;  3U73 U;  1NOR A;  4FAO C;  1IJC A;  1F94 A;  2PJY B;  4RUD A;  1CHV S;  1NYS A;  1QKE A;  2MFA A;  1ERA A;  1NTN A;  2H7Z B;  2QJB C;  1CDQ A;  1F8U B;  4DO8 A;  1QM7 A;  1RGJ A;  1TFS A;  1MAH F;  1LXG A;  3HH7 A;  3KFD I;  2MUO A;  1CVO A;  2NBT A;  2L03 A;  2HLQ A;  1V6P A;  1ZAD A;  1IKC A;  3NEQ A;  1ONJ A;  1CRE A;  1ES7 B;  1CXO A;  2H7Z A;  2L5S A;  2MJY A;  2UX2 A;  1CRF A;  1HOY A;  1KFH A;  1NYU A;  4HQP F;  1KBS A;  1CXN A;  1CDT A;  3PLC A;  2J8B A;  1BTE A;  1IDH A;  5IMY C;  6EBX A;  1TXA A;  1HC9 B;  3ERA A;  1CB9 A;  3EBX A;  2JQP A;  1IDG A;  3QB4 B;  1B41 B;  1LX5 B;  2BHI A;  2GOO C;  1FFJ A;  1KBT A;  2MHY A;  1YWH A;  2QC1 A;  1NXB A;  1FF4 A;  2CTX A;  4BDT B;  1KC4 A;  2CRS A;  2H62 D;  1KXI A;  1JBD A;  2BTX A;  1NTX A;  2MJ4 A;  2H64 C;  4OM4 A;  1KBA A;  4BIK B;  2QJ9 C;  4OM5 A;  1QKD A;  1KS6 A;  1IDI A;  1VB0 A;  1HC9 A;  2FD6 U;  5DZ5 A;  5EBX A;  5DU1 A;  1KU6 B;  1W6B A;  2PJY C;  1I02 A;  4UY2 C;  4FAO E;  1JE9 A;  1TXB A;  2MJ0 A;  3FEV A;  4IYE A;  2H5F A;  2CCX A;  1NEA A;  1KL8 A;  1IQ9 A;  1M9Z A;  1IDL A;  5IMT D;  1DRS A;  4XJJ A;  1RL5 A;  3LAQ U;  1H0J A;  2QJA C;  2CDX A;  1HAA A;  2H8U A;  2OFS A;  1PLO A;  4LFT A;  2HLR A;  3NH7 A;  4AEA A;  1G6M A;  1IK8 A;  2CRT A;  1LSI A;  1FSS B;  1REW C;  3NDS A;  1L4W A;  1CDS A;  4QTI U;  2K3G A;  2JVE A;  2I9B E;  1CCQ A;  2LA1 A;  3KFD E;  2VLW A;  2GOO B;  1COE A;  3EVS C;  5DO6 A;  1ABT A;  1LJZ A;  1ERG A;  1CTX A;  1HAJ A;  2ERA A;  2ABX A;  1MR6 A;  2LCR A;  1CDR A;  1BXP A;  1LXH A;  1KTZ B;  3VTS A;  4EY8 B;  1FSC A;  1S4Y A;  2N99 A;  2UWR A;  4ZQY A;  1FRA A; 
#chains in the Genus database with same CATH topology
 2H62 C;  1TGX A;  2X8B B;  2H64 B;  4P7U A;  3BT1 U;  1JGK A;  1UG4 A;  2MUP A;  3U74 U;  1COD A;  1FAS A;  3BT2 U;  1XT3 A;  3U73 U;  1NOR A;  4FAO C;  1IJC A;  1F94 A;  2PJY B;  4RUD A;  1CHV S;  1NYS A;  1QKE A;  2MFA A;  1ERA A;  1NTN A;  2H7Z B;  2QJB C;  1CDQ A;  1F8U B;  4DO8 A;  1QM7 A;  1RGJ A;  1TFS A;  1MAH F;  1LXG A;  3HH7 A;  3KFD I;  2MUO A;  1CVO A;  2NBT A;  2L03 A;  2HLQ A;  1V6P A;  1ZAD A;  1IKC A;  3NEQ A;  1ONJ A;  1CRE A;  1ES7 B;  1CXO A;  2H7Z A;  2L5S A;  2MJY A;  2UX2 A;  1CRF A;  1HOY A;  1KFH A;  1NYU A;  4HQP F;  1KBS A;  1CXN A;  1CDT A;  3PLC A;  2J8B A;  1BTE A;  1IDH A;  5IMY C;  6EBX A;  1TXA A;  1HC9 B;  3ERA A;  1CB9 A;  3EBX A;  2JQP A;  1IDG A;  3QB4 B;  1B41 B;  1LX5 B;  2BHI A;  2GOO C;  1FFJ A;  1KBT A;  2MHY A;  1YWH A;  2QC1 A;  1NXB A;  1FF4 A;  2CTX A;  4BDT B;  1KC4 A;  2CRS A;  2H62 D;  1KXI A;  1JBD A;  2BTX A;  1NTX A;  2MJ4 A;  2H64 C;  4OM4 A;  1KBA A;  4BIK B;  2QJ9 C;  4OM5 A;  1QKD A;  1KS6 A;  1IDI A;  1VB0 A;  1HC9 A;  2FD6 U;  5DZ5 A;  5EBX A;  5DU1 A;  1KU6 B;  1W6B A;  2PJY C;  1I02 A;  4UY2 C;  4FAO E;  1JE9 A;  1TXB A;  2MJ0 A;  3FEV A;  4IYE A;  2H5F A;  2CCX A;  1NEA A;  1KL8 A;  1IQ9 A;  1M9Z A;  1IDL A;  5IMT D;  1DRS A;  4XJJ A;  1RL5 A;  3LAQ U;  1H0J A;  2QJA C;  2CDX A;  1HAA A;  2H8U A;  2OFS A;  1PLO A;  4LFT A;  2HLR A;  3NH7 A;  4AEA A;  1G6M A;  1IK8 A;  2CRT A;  1LSI A;  1FSS B;  1REW C;  3NDS A;  1L4W A;  1CDS A;  4QTI U;  2K3G A;  2JVE A;  2I9B E;  1CCQ A;  2LA1 A;  3KFD E;  2VLW A;  2GOO B;  1COE A;  3EVS C;  4KSN A;  5DO6 A;  1ABT A;  1LJZ A;  1ERG A;  1CTX A;  1HAJ A;  2ERA A;  2ABX A;  1MR6 A;  2LCR A;  1CDR A;  1BXP A;  1LXH A;  1KTZ B;  3VTS A;  4EY8 B;  1FSC A;  1S4Y A;  2N99 A;  2UWR A;  4ZQY A;  1FRA A; 
#chains in the Genus database with same CATH homology
 2H62 C;  1TGX A;  2X8B B;  2H64 B;  4P7U A;  3BT1 U;  1JGK A;  1UG4 A;  2MUP A;  3U74 U;  1COD A;  1FAS A;  3BT2 U;  1XT3 A;  3U73 U;  1NOR A;  4FAO C;  1IJC A;  1F94 A;  2PJY B;  4RUD A;  1CHV S;  1NYS A;  1QKE A;  2MFA A;  1ERA A;  1NTN A;  2H7Z B;  2QJB C;  1CDQ A;  1F8U B;  4DO8 A;  1QM7 A;  1RGJ A;  1TFS A;  1MAH F;  1LXG A;  3HH7 A;  3KFD I;  2MUO A;  1CVO A;  2NBT A;  2L03 A;  2HLQ A;  1V6P A;  1ZAD A;  1IKC A;  3NEQ A;  1ONJ A;  1CRE A;  1ES7 B;  1CXO A;  2H7Z A;  2L5S A;  2MJY A;  2UX2 A;  1CRF A;  1HOY A;  1KFH A;  1NYU A;  4HQP F;  1KBS A;  1CXN A;  1CDT A;  3PLC A;  2J8B A;  1BTE A;  1IDH A;  5IMY C;  6EBX A;  1TXA A;  1HC9 B;  3ERA A;  1CB9 A;  3EBX A;  2JQP A;  1IDG A;  3QB4 B;  1B41 B;  1LX5 B;  2BHI A;  2GOO C;  1FFJ A;  1KBT A;  2MHY A;  1YWH A;  2QC1 A;  1NXB A;  1FF4 A;  2CTX A;  4BDT B;  1KC4 A;  2CRS A;  2H62 D;  1KXI A;  1JBD A;  2BTX A;  1NTX A;  2MJ4 A;  2H64 C;  4OM4 A;  1KBA A;  4BIK B;  2QJ9 C;  4OM5 A;  1QKD A;  1KS6 A;  1IDI A;  1VB0 A;  1HC9 A;  2FD6 U;  5DZ5 A;  5EBX A;  5DU1 A;  1KU6 B;  1W6B A;  2PJY C;  1I02 A;  4UY2 C;  4FAO E;  1JE9 A;  1TXB A;  2MJ0 A;  3FEV A;  4IYE A;  2H5F A;  2CCX A;  1NEA A;  1KL8 A;  1IQ9 A;  1M9Z A;  1IDL A;  5IMT D;  1DRS A;  4XJJ A;  1RL5 A;  3LAQ U;  1H0J A;  2QJA C;  2CDX A;  1HAA A;  2H8U A;  2OFS A;  1PLO A;  4LFT A;  2HLR A;  3NH7 A;  4AEA A;  1G6M A;  1IK8 A;  2CRT A;  1LSI A;  1FSS B;  1REW C;  3NDS A;  1L4W A;  1CDS A;  4QTI U;  2K3G A;  2JVE A;  2I9B E;  1CCQ A;  2LA1 A;  3KFD E;  2VLW A;  2GOO B;  1COE A;  3EVS C;  4KSN A;  5DO6 A;  1ABT A;  1LJZ A;  1ERG A;  1CTX A;  1HAJ A;  2ERA A;  2ABX A;  1MR6 A;  2LCR A;  1CDR A;  1BXP A;  1LXH A;  1KTZ B;  3VTS A;  4EY8 B;  1FSC A;  1S4Y A;  2N99 A;  2UWR A;  4ZQY A;  1FRA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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