2KNQA

Solution structure of e.coli gsph
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
142
structure length
142
Chain Sequence
MAYGREDVANTRARETAARFTAALELAIDRATLSGQPVGIHFSDSAWRIMVPGKTPSAWRWVPLQEDAADESQNDWDEELSIHLQPFKPDDSNQPQVVILADGQITPFSLLMANAGTGEPLLTLVCSGSWPLDQTLARDTRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords General secretion pathway protein H
publication title Solution structure of GspH
rcsb
source organism Escherichia coli
total genus 37
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2009-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12019 GspH Type II transport protein GspH
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.55.40.10 Alpha Beta 3-Layer(bab) Sandwich minor pseudopilin epsh fold minor pseudopilin epsh domain 2knqA01
2QV8A 2KNQA 4IPVA 4IPUA 4DQ9A
chains in the Genus database with same CATH superfamily
2QV8A 2KNQA 4IPVA 4IPUA 4DQ9A
chains in the Genus database with same CATH topology
2QV8A 2KNQA 4IPVA 4IPUA 4DQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QV8 A;  2KNQ A;  4IPV A;  4IPU A;  4DQ9 A; 
#chains in the Genus database with same CATH topology
 2QV8 A;  2KNQ A;  4IPV A;  4IPU A;  4DQ9 A; 
#chains in the Genus database with same CATH homology
 2QV8 A;  2KNQ A;  4IPV A;  4IPU A;  4DQ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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