2LENA

Solution structure of uchl1 s18y variant
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
Knots found
sequence length
231
structure length
231
Chain Sequence
MQLKPMEINPEMLNKVLYRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKKQIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAALEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase isozyme L1
publication title Backbone and side-chain (1)H, (15)N and (13)C resonance assignments of S18Y mutant of ubiquitin carboxy-terminal hydrolase L1
rcsb
source organism Homo sapiens
total genus 50
structure length 231
sequence length 231
other databases KnotProt 2.0: K -52 -31 -31
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2011-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01088 Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.532.10 Alpha Beta 3-Layer(aba) Sandwich Ubiquitin C-terminal Hydrolase UCH-l3 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 2lenA00
3IFWA 2ETLA 1UCHA 4IG7A 4UEMA 3KW5A 3IRTA 2LENA 1XD3A 3TB3A 1CMXA 4UELA 3A7SA 3RIIA 4JKJA 4I6NA 3KVFA 3IHRA 3RISA 4DM9A
chains in the Genus database with same CATH superfamily
3IFWA 2ETLA 1UCHA 4IG7A 4UEMA 3KW5A 3IRTA 2LENA 1XD3A 3TB3A 1CMXA 4UELA 3A7SA 3RIIA 4JKJA 4I6NA 3KVFA 3IHRA 3RISA 4DM9A
chains in the Genus database with same CATH topology
3IFWA 2ETLA 1UCHA 4IG7A 4UEMA 3KW5A 3IRTA 2LENA 1XD3A 3TB3A 1CMXA 4UELA 3A7SA 3RIIA 4JKJA 4I6NA 3KVFA 3IHRA 3RISA 4DM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IFW A;  2ETL A;  1UCH A;  4IG7 A;  4UEM A;  3KW5 A;  3IRT A;  2LEN A;  1XD3 A;  3TB3 A;  1CMX A;  4UEL A;  3A7S A;  3RII A;  4JKJ A;  4I6N A;  3KVF A;  3IHR A;  3RIS A;  4DM9 A; 
#chains in the Genus database with same CATH topology
 3IFW A;  2ETL A;  1UCH A;  4IG7 A;  4UEM A;  3KW5 A;  3IRT A;  2LEN A;  1XD3 A;  3TB3 A;  1CMX A;  4UEL A;  3A7S A;  3RII A;  4JKJ A;  4I6N A;  3KVF A;  3IHR A;  3RIS A;  4DM9 A; 
#chains in the Genus database with same CATH homology
 3IFW A;  2ETL A;  1UCH A;  4IG7 A;  4UEM A;  3KW5 A;  3IRT A;  2LEN A;  1XD3 A;  3TB3 A;  1CMX A;  4UEL A;  3A7S A;  3RII A;  4JKJ A;  4I6N A;  3KVF A;  3IHR A;  3RIS A;  4DM9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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