2NQXA

Crystal structure of bovine lactoperoxidase with iodide ions at 2.9a resolution
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
595
structure length
595
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Crystal Structure of bovine lactoperoxidase with iodide ions at 2.9A resolution
rcsb
total genus 186
structure length 595
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2006-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 2nqxA00
1HT8A 1D7WC 1CX2A 2IPSA 2OJVA 3F9PC 4KVLA 4RRZA 5JVYA 3R5QA 4LJJA 3NT1A 3N8FA 2EFBA 3N8YA 4Z0LA 5FF1A 2R5LA 3LN1A 2PUMA 3NYHA 3RR3A 4N7AA 3TGYA 4FM5A 2EHAA 2GJMA 3OLUA 3OGWA 5FDQA 5GH0A 3R55A 1DDXA 1EQHA 3N8ZA 3V6QA 4KVJA 4KVKA 5JVZA 3UBAA 4C1MC 5HPWA 4QYQA 3SXVA 4IG5A 4NJBA 1IGZA 3KRKA 3HS7A 3RKEA 1Q4GA 3FNLA 3GCJA 3KRQA 3BXIA 5GLSA 1CQEA 3GCKA 3N8VA 1CVUA 4E1GA 3QL6A 3NTBA 1DNWC 4RRXA 3GC1A 3Q9KA 4HHRA 4NT3A 4PH9A 4O1ZA 1PGEA 4OTJA 3N8YB 1HT5A 3N8WA 2E9EA 1MYPC 3PY4A 1MHLC 3TZIA 1U67A 4OTYA 6COXA 1CXPC 1PXXA 3HS6A 3ERHA 3QMOA 3R4XA 3R5OA 4M11A 5IKQA 4OEKA 4RRWA 4KSZA 3QH0A 3ZS0C 1IGXA 2QRBA 5FIWC 4RUTA 3ZS1C 5IKRA 3NIUA 3QF1A 3MDLA 4DL1C 3LN0A 2O86A 3GCLA 2NQXA 5JW1A 1D5LC 4M10A 3OLTA 4COXA 5F19A 2Z5ZA 2PT3A 3FAQA 4Y55A 3ERIA 4GM7A 4QJQA 5IKVA 5F1AA 1EQGA 1EBVA 4GN6A 4RRYA 4RS0A 5KIRA 3Q7DA 1DNUC 1PRHA 2AYLA 2IKCA 2QQTA 1FE2A 1D2VC 3PGHA 1PTHA 3NAKA 5COXA 5IKTA 3S4FA 4HHSA 5B72A 2OYUP 3MQEA 2QPKA 3N8XA 4PNXA 1DIYA 3NTGA 3N8WB 4MSFA 3I6NA 2OYEP 3KK6A 3HS5A
chains in the Genus database with same CATH superfamily
1HT8A 1D7WC 1CX2A 2IPSA 2OJVA 3F9PC 4KVLA 4RRZA 5JVYA 3R5QA 4LJJA 3NT1A 3N8FA 2EFBA 3N8YA 4Z0LA 5FF1A 2R5LA 3LN1A 2PUMA 3NYHA 3RR3A 4N7AA 3TGYA 4FM5A 2EHAA 2GJMA 3OLUA 3OGWA 5FDQA 5GH0A 3R55A 1DDXA 1EQHA 3N8ZA 3V6QA 4KVJA 4KVKA 5JVZA 3UBAA 4C1MC 5HPWA 4QYQA 3SXVA 4IG5A 4NJBA 1IGZA 3KRKA 3HS7A 3RKEA 1Q4GA 3FNLA 3GCJA 3KRQA 3BXIA 5GLSA 1CQEA 3GCKA 3N8VA 1CVUA 4E1GA 3QL6A 3NTBA 1DNWC 4RRXA 3GC1A 3Q9KA 4HHRA 4NT3A 4PH9A 4O1ZA 1PGEA 4OTJA 3N8YB 1HT5A 3N8WA 2E9EA 1MYPC 3PY4A 1MHLC 3TZIA 1U67A 4OTYA 6COXA 1CXPC 1PXXA 3HS6A 3ERHA 3QMOA 3R4XA 3R5OA 4M11A 5IKQA 4OEKA 4RRWA 4KSZA 3QH0A 3ZS0C 1IGXA 2QRBA 5FIWC 4RUTA 3ZS1C 5IKRA 3NIUA 3QF1A 3MDLA 4DL1C 3LN0A 2O86A 3GCLA 2NQXA 5JW1A 1D5LC 4M10A 3OLTA 4COXA 5F19A 2Z5ZA 2PT3A 3FAQA 4Y55A 3ERIA 4GM7A 4QJQA 5IKVA 5F1AA 1EQGA 1EBVA 4GN6A 4RRYA 4RS0A 5KIRA 3Q7DA 1DNUC 1PRHA 2AYLA 2IKCA 2QQTA 1FE2A 1D2VC 3PGHA 1PTHA 3NAKA 5COXA 5IKTA 3S4FA 4HHSA 5B72A 2OYUP 3MQEA 2QPKA 3N8XA 4PNXA 1DIYA 3NTGA 3N8WB 4MSFA 3I6NA 2OYEP 3KK6A 3HS5A
chains in the Genus database with same CATH topology
1HT8A 1D7WC 1CX2A 2IPSA 2OJVA 3F9PC 4KVLA 4RRZA 5JVYA 3R5QA 4LJJA 3NT1A 3N8FA 2EFBA 3N8YA 4Z0LA 5FF1A 2R5LA 3LN1A 2PUMA 3NYHA 3RR3A 4N7AA 3TGYA 4FM5A 2EHAA 2GJMA 3OLUA 3OGWA 5FDQA 5GH0A 3R55A 1DDXA 1EQHA 3N8ZA 3V6QA 4KVJA 4KVKA 5JVZA 3UBAA 4C1MC 5HPWA 4QYQA 3SXVA 4IG5A 4NJBA 1IGZA 3KRKA 3HS7A 3RKEA 1Q4GA 3FNLA 3GCJA 3KRQA 3BXIA 5GLSA 1CQEA 3GCKA 3N8VA 1CVUA 4E1GA 3QL6A 3NTBA 1DNWC 4RRXA 3GC1A 3Q9KA 4HHRA 4NT3A 4PH9A 4O1ZA 1PGEA 4OTJA 3N8YB 1HT5A 3N8WA 2E9EA 1MYPC 3PY4A 1MHLC 3TZIA 1U67A 4OTYA 6COXA 1CXPC 1PXXA 3HS6A 3ERHA 3QMOA 3R4XA 3R5OA 4M11A 5IKQA 4OEKA 4RRWA 4KSZA 3QH0A 3ZS0C 1IGXA 2QRBA 5FIWC 4RUTA 3ZS1C 5IKRA 3NIUA 3QF1A 3MDLA 4DL1C 3LN0A 2O86A 3GCLA 2NQXA 5JW1A 1D5LC 4M10A 3OLTA 4COXA 5F19A 2Z5ZA 2PT3A 3FAQA 4Y55A 3ERIA 4GM7A 4QJQA 5IKVA 5F1AA 1EQGA 1EBVA 4GN6A 4RRYA 4RS0A 5KIRA 3Q7DA 1DNUC 1PRHA 2AYLA 2IKCA 2QQTA 1FE2A 1D2VC 3PGHA 1PTHA 3NAKA 5COXA 5IKTA 3S4FA 4HHSA 5B72A 2OYUP 3MQEA 2QPKA 3N8XA 4PNXA 1DIYA 3NTGA 3N8WB 4MSFA 3I6NA 2OYEP 3KK6A 3HS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HT8 A;  1D7W C;  1CX2 A;  2IPS A;  2OJV A;  3F9P C;  4KVL A;  4RRZ A;  5JVY A;  3R5Q A;  4LJJ A;  3NT1 A;  3N8F A;  2EFB A;  3N8Y A;  4Z0L A;  5FF1 A;  2R5L A;  3LN1 A;  2PUM A;  3NYH A;  3RR3 A;  4N7A A;  3TGY A;  4FM5 A;  2EHA A;  2GJM A;  3OLU A;  3OGW A;  5FDQ A;  5GH0 A;  3R55 A;  1DDX A;  1EQH A;  3N8Z A;  3V6Q A;  4KVJ A;  4KVK A;  5JVZ A;  3UBA A;  4C1M C;  5HPW A;  4QYQ A;  3SXV A;  4IG5 A;  4NJB A;  1IGZ A;  3KRK A;  3HS7 A;  3RKE A;  1Q4G A;  3FNL A;  3GCJ A;  3KRQ A;  3BXI A;  5GLS A;  1CQE A;  3GCK A;  3N8V A;  1CVU A;  4E1G A;  3QL6 A;  3NTB A;  1DNW C;  4RRX A;  3GC1 A;  3Q9K A;  4HHR A;  4NT3 A;  4PH9 A;  4O1Z A;  1PGE A;  4OTJ A;  3N8Y B;  1HT5 A;  3N8W A;  2E9E A;  1MYP C;  3PY4 A;  1MHL C;  3TZI A;  1U67 A;  4OTY A;  6COX A;  1CXP C;  1PXX A;  3HS6 A;  3ERH A;  3QMO A;  3R4X A;  3R5O A;  4M11 A;  5IKQ A;  4OEK A;  4RRW A;  4KSZ A;  3QH0 A;  3ZS0 C;  1IGX A;  2QRB A;  5FIW C;  4RUT A;  3ZS1 C;  5IKR A;  3NIU A;  3QF1 A;  3MDL A;  4DL1 C;  3LN0 A;  2O86 A;  3GCL A;  2NQX A;  5JW1 A;  1D5L C;  4M10 A;  3OLT A;  4COX A;  5F19 A;  2Z5Z A;  2PT3 A;  3FAQ A;  4Y55 A;  3ERI A;  4GM7 A;  4QJQ A;  5IKV A;  5F1A A;  1EQG A;  1EBV A;  4GN6 A;  4RRY A;  4RS0 A;  5KIR A;  3Q7D A;  1DNU C;  1PRH A;  2AYL A;  2IKC A;  2QQT A;  1FE2 A;  1D2V C;  3PGH A;  1PTH A;  3NAK A;  5COX A;  5IKT A;  3S4F A;  4HHS A;  5B72 A;  2OYU P;  3MQE A;  2QPK A;  3N8X A;  4PNX A;  1DIY A;  3NTG A;  3N8W B;  4MSF A;  3I6N A;  2OYE P;  3KK6 A;  3HS5 A; 
#chains in the Genus database with same CATH topology
 1HT8 A;  1D7W C;  1CX2 A;  2IPS A;  2OJV A;  3F9P C;  4KVL A;  4RRZ A;  5JVY A;  3R5Q A;  4LJJ A;  3NT1 A;  3N8F A;  2EFB A;  3N8Y A;  4Z0L A;  5FF1 A;  2R5L A;  3LN1 A;  2PUM A;  3NYH A;  3RR3 A;  4N7A A;  3TGY A;  4FM5 A;  2EHA A;  2GJM A;  3OLU A;  3OGW A;  5FDQ A;  5GH0 A;  3R55 A;  1DDX A;  1EQH A;  3N8Z A;  3V6Q A;  4KVJ A;  4KVK A;  5JVZ A;  3UBA A;  4C1M C;  5HPW A;  4QYQ A;  3SXV A;  4IG5 A;  4NJB A;  1IGZ A;  3KRK A;  3HS7 A;  3RKE A;  1Q4G A;  3FNL A;  3GCJ A;  3KRQ A;  3BXI A;  5GLS A;  1CQE A;  3GCK A;  3N8V A;  1CVU A;  4E1G A;  3QL6 A;  3NTB A;  1DNW C;  4RRX A;  3GC1 A;  3Q9K A;  4HHR A;  4NT3 A;  4PH9 A;  4O1Z A;  1PGE A;  4OTJ A;  3N8Y B;  1HT5 A;  3N8W A;  2E9E A;  1MYP C;  3PY4 A;  1MHL C;  3TZI A;  1U67 A;  4OTY A;  6COX A;  1CXP C;  1PXX A;  3HS6 A;  3ERH A;  3QMO A;  3R4X A;  3R5O A;  4M11 A;  5IKQ A;  4OEK A;  4RRW A;  4KSZ A;  3QH0 A;  3ZS0 C;  1IGX A;  2QRB A;  5FIW C;  4RUT A;  3ZS1 C;  5IKR A;  3NIU A;  3QF1 A;  3MDL A;  4DL1 C;  3LN0 A;  2O86 A;  3GCL A;  2NQX A;  5JW1 A;  1D5L C;  4M10 A;  3OLT A;  4COX A;  5F19 A;  2Z5Z A;  2PT3 A;  3FAQ A;  4Y55 A;  3ERI A;  4GM7 A;  4QJQ A;  5IKV A;  5F1A A;  1EQG A;  1EBV A;  4GN6 A;  4RRY A;  4RS0 A;  5KIR A;  3Q7D A;  1DNU C;  1PRH A;  2AYL A;  2IKC A;  2QQT A;  1FE2 A;  1D2V C;  3PGH A;  1PTH A;  3NAK A;  5COX A;  5IKT A;  3S4F A;  4HHS A;  5B72 A;  2OYU P;  3MQE A;  2QPK A;  3N8X A;  4PNX A;  1DIY A;  3NTG A;  3N8W B;  4MSF A;  3I6N A;  2OYE P;  3KK6 A;  3HS5 A; 
#chains in the Genus database with same CATH homology
 1HT8 A;  1D7W C;  1CX2 A;  2IPS A;  2OJV A;  3F9P C;  4KVL A;  4RRZ A;  5JVY A;  3R5Q A;  4LJJ A;  3NT1 A;  3N8F A;  2EFB A;  3N8Y A;  4Z0L A;  5FF1 A;  2R5L A;  3LN1 A;  2PUM A;  3NYH A;  3RR3 A;  4N7A A;  3TGY A;  4FM5 A;  2EHA A;  2GJM A;  3OLU A;  3OGW A;  5FDQ A;  5GH0 A;  3R55 A;  1DDX A;  1EQH A;  3N8Z A;  3V6Q A;  4KVJ A;  4KVK A;  5JVZ A;  3UBA A;  4C1M C;  5HPW A;  4QYQ A;  3SXV A;  4IG5 A;  4NJB A;  1IGZ A;  3KRK A;  3HS7 A;  3RKE A;  1Q4G A;  3FNL A;  3GCJ A;  3KRQ A;  3BXI A;  5GLS A;  1CQE A;  3GCK A;  3N8V A;  1CVU A;  4E1G A;  3QL6 A;  3NTB A;  1DNW C;  4RRX A;  3GC1 A;  3Q9K A;  4HHR A;  4NT3 A;  4PH9 A;  4O1Z A;  1PGE A;  4OTJ A;  3N8Y B;  1HT5 A;  3N8W A;  2E9E A;  1MYP C;  3PY4 A;  1MHL C;  3TZI A;  1U67 A;  4OTY A;  6COX A;  1CXP C;  1PXX A;  3HS6 A;  3ERH A;  3QMO A;  3R4X A;  3R5O A;  4M11 A;  5IKQ A;  4OEK A;  4RRW A;  4KSZ A;  3QH0 A;  3ZS0 C;  1IGX A;  2QRB A;  5FIW C;  4RUT A;  3ZS1 C;  5IKR A;  3NIU A;  3QF1 A;  3MDL A;  4DL1 C;  3LN0 A;  2O86 A;  3GCL A;  2NQX A;  5JW1 A;  1D5L C;  4M10 A;  3OLT A;  4COX A;  5F19 A;  2Z5Z A;  2PT3 A;  3FAQ A;  4Y55 A;  3ERI A;  4GM7 A;  4QJQ A;  5IKV A;  5F1A A;  1EQG A;  1EBV A;  4GN6 A;  4RRY A;  4RS0 A;  5KIR A;  3Q7D A;  1DNU C;  1PRH A;  2AYL A;  2IKC A;  2QQT A;  1FE2 A;  1D2V C;  3PGH A;  1PTH A;  3NAK A;  5COX A;  5IKT A;  3S4F A;  4HHS A;  5B72 A;  2OYU P;  3MQE A;  2QPK A;  3N8X A;  4PNX A;  1DIY A;  3NTG A;  3N8W B;  4MSF A;  3I6N A;  2OYE P;  3KK6 A;  3HS5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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