2O5JE

Crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
95
structure length
95
Chain Sequence
AEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAVTWAMKELLTGRLVFGENLVPEDRLQKEMERLYPVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/dna-rna hybrid
molecule keywords 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP
publication title Structural basis for substrate loading in bacterial RNA polymerase.
pubmed doi rcsb
total genus 19
structure length 95
sequence length 95
chains with identical sequence O
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2006-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2o5jE00
2JA6F 4KMUE 1WCMF 3S1NF 3S17F 4AYBK 1TWAF 4A3KF 4Q4ZE 4G7ZE 2JA7F 4X6AF 4A3FF 1ZYRE 5E17E 3I4NF 4A3CF 2YU9F 4MQ9E 4Q5SE 5E18E 1TWGF 4C3HF 3FKIF 4A3IF 3M4OF 2PPBE 1YNNK 3HOXF 3HOUF 3WODE 5M3MF 3S15F 5M3FF 4A3LF 2E2IF 5IYDF 5C4JF 3I4MF 4C3IF 4BXXF 1R9TF 1TWFF 4OIPE 3S16F 3PO3F 4A3MF 4XLPE 1I6HF 5IP9F 4A3DF 5C3EF 3GTLF 2A68E 3S2DF 4A93F 4ZH4E 1IW7E 4OIRE 4Y52F 3HKZK 5D4DE 5C4XF 2R93F 4BBRF 1SMYE 3GTKF 3DXJE 1K83F 4OIQE 2A6EE 2NVXF 1QKLA 2E2JF 3S2HF 3HOYF 4LK1E 3GTPF 3H0GF 2JA5F 3GTMF 3H3VG 2VUMF 4A3EF 5M5YF 4BBSF 4KN4E 2A6HE 5IYBF 5FJ8F 5M5WF 1Y1WF 3GTOF 5IP7F 1Y1VF 2B63F 3S1RF 3RZDF 2NVTF 1TWCF 3EQLE 4Y7NF 2PMZK 2R7ZF 1HQME 1I3QF 4G7HE 4KN7E 5TMCE 4C2MF 2O5IE 3S1QF 4A3BF 4BY1F 2JA8F 3HOWF 3RZOF 2E2HF 4A3JF 4XLNE 5D4CE 4YG2E 3HOZF 3S14F 4A3GF 5C44F 3GTJF 4MEXE 5BYHE 1I6VE 5D4EE 2CW0E 4C3JF 3S1MF 2WB1I 1SFOF 4OINE 2Y0SI 4XSZE 2NVQF 3GTGF 3GTQF 4JK1E 5IPLE 5FLMF 2WAQK 4YFNE 2R92F 4GZYE 4BY7F 3CQZF 5TMFE 4YFXE 5M5XF 2O5JE 3HOVF 2NVYF 4G7OE 4LJZE 4XSXE 3PO2F 4YFKE 5IYCF 1TWHF 4MEYE 2A69E 4OIOE 3M3YF 4LLGE 2BE5E 1YNJK 3K7AF 4LK0E 1I50F
chains in the Genus database with same CATH superfamily
1Y1VE 3PO3E 2JA6F 4KMUE 4A3ME 1WCMF 3S1NF 3S17F 4AYBK 1TWAF 1I6HE 4A3KF 5IP9E 4Q4ZE 4QIWH 4G7ZE 2JA7F 3GTLE 4A3FF 1ZYRE 4A3DE 4X6AF 5E17E 3HKZH 3I4NF 4A3CF 1I3QE 4MQ9E 2YU9F 4Q5SE 4A93E 5E18E 1TWGF 4C3HF 3FKIF 4C2ME 4A3IF 2PPBE 3M4OF 4Y52E 1YNNK 3HOXF 3HOUF 5C4XE 2R93E 3WODE 5M3MF 4BY1E 3S15F 4BBRE 4A3BE 5M3FF 4A3LF 2E2IF 5IYDF 5C4JF 3GTKE 3I4MF 1K83E 4C3IF 2NVXE 2E2JE 3S2HE 3HOYE 4BXXF 3GTPE 1R9TF 3H0GE 1TWFF 4OIPE 2E2HE 3GTME 3S16F 3PO3F 4A3MF 4A3EE 5M5YE 2VUME 5FJ8E 5IYBE 5M5WE 4XLPE 1Y1WE 1I6HF 3GTOE 5IP9F 4A3DF 5C3EF 5IP7E 3GTLF 2A68E 2B63E 3S2DF 2PMZH 4A93F 2KRXA 1IW7E 4ZH4E 3S1RE 3RZDE 4OIRE 2NVTE 4QIWK 1TWCE 4Y52F 3HKZK 4Y7NE 3S1ME 5D4DE 5C4XF 2R7ZE 2R93F 4BBRF 1SMYE 3GTKF 3DXJE 1K83F 4OIQE 2A6EE 2NVXF 3S1QE 1QKLA 2E2JF 3S2HF 3HOYF 4LK1E 2JA8E 3GTPF 3H0GF 2JA5F 3GTMF 3HOWE 3H3VG 3RZOE 2VUMF 2Y0SH 5M5YF 4A3JE 4KN4E 2A6HE 5IYBF 5FJ8F 5M5WF 4A3EF 1Y1WF 3GTOF 3HOVE 5IP7F 5IYCE 1Y1VF 1I50F 3M3YE 2B63F 3HOZE 1EIKA 3S14E 3S1RF 3RZDF 2NVTF 1TWCF 4A3GE 5C44E 3GTJE 1I50E 3EQLE 2PMZK 4Y7NF 2R7ZF 1HQME 1I3QF 1WCME 4G7HE 4KN7E 5TMCE 4C2MF 2O5IE 4C3JE 3S1QF 3I4NE 1SFOE 4BY1F 2WAQH 2YU9E 3H3VF 2JA8F 3HOWF 4A3BF 3RZOF 2NVQE 2E2HF 4A3JF 3GTGE 3GTQE 5FLME 4XLNE 2R92E 5D4CE 4YG2E 4BY7E 5M3FE 3CQZE 4A3LE 2WB1H 3HOZF 5M5XE 4C3IE 2NVYE 3S14F 3S16E 3PO2E 4A3GF 5C44F 3GTJF 1DZFA 4MEXE 5BYHE 1I6VE 5D4EE 3K7AE 4AYBH 5C3EE 1TWHE 2CW0E 4C3JF 3S1MF 2JA6E 2WB1I 3S2DE 1SFOF 3S1NE 4OINE 2Y0SI 3S17E 4XSZE 1TWAE 4A3KE 2NVQF 2JA7E 3GTGF 4X6AE 4A3FE 3GTQF 4JK1E 5IPLE 5FLMF 2WAQK 4YFNE 2R92F 4GZYE 4A3CE 4BY7F 3CQZF 5TMFE 1TWGE 4C3HE 3FKIE 4A3IE 3M4OE 4YFXE 5M5XF 2O5JE 3HOVF 2NVYF 4G7OE 3HOXE 3HOUE 4LJZE 4XSXE 5M3ME 3S15E 3PO2F 4YFKE 5IYCF 5IYDE 5C4JE 4MEYE 2A69E 2E2IE 2JA5E 4OIOE 3M3YF 3I4ME 4LLGE 4BBSF 4BBSE 2BE5E 1YNJK 4BXXE 3K7AF 1R9TE 4LK0E 1TWHF 1TWFE
chains in the Genus database with same CATH topology
2JA6F 4KMUE 1WCMF 3S1NF 3S17F 4AYBK 1TWAF 4A3KF 4Q4ZE 4G7ZE 2JA7F 4X6AF 4A3FF 1ZYRE 5E17E 3I4NF 4A3CF 2YU9F 4MQ9E 4Q5SE 5E18E 1TWGF 4C3HF 3FKIF 4A3IF 3M4OF 2PPBE 1YNNK 3HOXF 3HOUF 3WODE 5M3MF 3S15F 5M3FF 4A3LF 2E2IF 5IYDF 5C4JF 3I4MF 4C3IF 4BXXF 1R9TF 1TWFF 4OIPE 3S16F 3PO3F 4A3MF 4XLPE 1I6HF 5IP9F 4A3DF 5C3EF 3GTLF 2A68E 3S2DF 4A93F 2KRXA 1IW7E 4ZH4E 4OIRE 4QIWK 4Y52F 3HKZK 5D4DE 5C4XF 2R93F 4BBRF 1SMYE 3GTKF 3DXJE 1K83F 4OIQE 2A6EE 2NVXF 1QKLA 2E2JF 3S2HF 3HOYF 4LK1E 3GTPF 3H0GF 2JA5F 3GTMF 3H3VG 2VUMF 4A3EF 5M5YF 4BBSF 4KN4E 2A6HE 5IYBF 5FJ8F 5M5WF 1Y1WF 3GTOF 5IP7F 1Y1VF 2B63F 3S1RF 3RZDF 2NVTF 1TWCF 3EQLE 4Y7NF 2PMZK 2R7ZF 1HQME 1I3QF 4G7HE 4KN7E 5TMCE 4C2MF 2O5IE 3S1QF 4A3BF 4BY1F 2JA8F 3HOWF 3RZOF 2E2HF 4A3JF 4XLNE 5D4CE 4YG2E 3HOZF 3S14F 4A3GF 5C44F 3GTJF 4MEXE 5BYHE 1I6VE 5D4EE 2CW0E 4C3JF 3S1MF 2WB1I 1SFOF 4OINE 2Y0SI 4XSZE 2NVQF 3GTGF 3GTQF 4JK1E 5IPLE 5FLMF 2WAQK 4YFNE 2R92F 4GZYE 4BY7F 3CQZF 5TMFE 4YFXE 5M5XF 2O5JE 3HOVF 2NVYF 4G7OE 4LJZE 4XSXE 3PO2F 4YFKE 5IYCF 1TWHF 4MEYE 2A69E 4OIOE 3M3YF 4LLGE 2BE5E 1YNJK 3K7AF 4LK0E 1I50F
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA6 F;  4KMU E;  1WCM F;  3S1N F;  3S17 F;  4AYB K;  1TWA F;  4A3K F;  4Q4Z E;  4G7Z E;  2JA7 F;  4X6A F;  4A3F F;  1ZYR E;  5E17 E;  3I4N F;  4A3C F;  2YU9 F;  4MQ9 E;  4Q5S E;  5E18 E;  1TWG F;  4C3H F;  3FKI F;  4A3I F;  3M4O F;  2PPB E;  1YNN K;  3HOX F;  3HOU F;  3WOD E;  5M3M F;  3S15 F;  5M3F F;  4A3L F;  2E2I F;  5IYD F;  5C4J F;  3I4M F;  4C3I F;  4BXX F;  1R9T F;  1TWF F;  4OIP E;  3S16 F;  3PO3 F;  4A3M F;  4XLP E;  1I6H F;  5IP9 F;  4A3D F;  5C3E F;  3GTL F;  2A68 E;  3S2D F;  4A93 F;  4ZH4 E;  1IW7 E;  4OIR E;  4Y52 F;  3HKZ K;  5D4D E;  5C4X F;  2R93 F;  4BBR F;  1SMY E;  3GTK F;  3DXJ E;  1K83 F;  4OIQ E;  2A6E E;  2NVX F;  1QKL A;  2E2J F;  3S2H F;  3HOY F;  4LK1 E;  3GTP F;  3H0G F;  2JA5 F;  3GTM F;  3H3V G;  2VUM F;  4A3E F;  5M5Y F;  4BBS F;  4KN4 E;  2A6H E;  5IYB F;  5FJ8 F;  5M5W F;  1Y1W F;  3GTO F;  5IP7 F;  1Y1V F;  2B63 F;  3S1R F;  3RZD F;  2NVT F;  1TWC F;  3EQL E;  4Y7N F;  2PMZ K;  2R7Z F;  1HQM E;  1I3Q F;  4G7H E;  4KN7 E;  5TMC E;  4C2M F;  2O5I E;  3S1Q F;  4A3B F;  4BY1 F;  2JA8 F;  3HOW F;  3RZO F;  2E2H F;  4A3J F;  4XLN E;  5D4C E;  4YG2 E;  3HOZ F;  3S14 F;  4A3G F;  5C44 F;  3GTJ F;  4MEX E;  5BYH E;  1I6V E;  5D4E E;  2CW0 E;  4C3J F;  3S1M F;  2WB1 I;  1SFO F;  4OIN E;  2Y0S I;  4XSZ E;  2NVQ F;  3GTG F;  3GTQ F;  4JK1 E;  5IPL E;  5FLM F;  2WAQ K;  4YFN E;  2R92 F;  4GZY E;  4BY7 F;  3CQZ F;  5TMF E;  4YFX E;  5M5X F;  2O5J E;  3HOV F;  2NVY F;  4G7O E;  4LJZ E;  4XSX E;  3PO2 F;  4YFK E;  5IYC F;  1TWH F;  4MEY E;  2A69 E;  4OIO E;  3M3Y F;  4LLG E;  2BE5 E;  1YNJ K;  3K7A F;  4LK0 E;  1I50 F; 
#chains in the Genus database with same CATH topology
 1Y1V E;  3PO3 E;  2JA6 F;  4KMU E;  4A3M E;  1WCM F;  3S1N F;  3S17 F;  4AYB K;  1TWA F;  1I6H E;  4A3K F;  5IP9 E;  4Q4Z E;  4QIW H;  4G7Z E;  2JA7 F;  3GTL E;  4A3F F;  1ZYR E;  4A3D E;  4X6A F;  5E17 E;  3HKZ H;  3I4N F;  4A3C F;  1I3Q E;  4MQ9 E;  2YU9 F;  4Q5S E;  4A93 E;  5E18 E;  1TWG F;  4C3H F;  3FKI F;  4C2M E;  4A3I F;  2PPB E;  3M4O F;  4Y52 E;  1YNN K;  3HOX F;  3HOU F;  5C4X E;  2R93 E;  3WOD E;  5M3M F;  4BY1 E;  3S15 F;  4BBR E;  4A3B E;  5M3F F;  4A3L F;  2E2I F;  5IYD F;  5C4J F;  3GTK E;  3I4M F;  1K83 E;  4C3I F;  2NVX E;  2E2J E;  3S2H E;  3HOY E;  4BXX F;  3GTP E;  1R9T F;  3H0G E;  1TWF F;  4OIP E;  2E2H E;  3GTM E;  3S16 F;  3PO3 F;  4A3M F;  4A3E E;  5M5Y E;  2VUM E;  5FJ8 E;  5IYB E;  5M5W E;  4XLP E;  1Y1W E;  1I6H F;  3GTO E;  5IP9 F;  4A3D F;  5C3E F;  5IP7 E;  3GTL F;  2A68 E;  2B63 E;  3S2D F;  2PMZ H;  4A93 F;  2KRX A;  1IW7 E;  4ZH4 E;  3S1R E;  3RZD E;  4OIR E;  2NVT E;  4QIW K;  1TWC E;  4Y52 F;  3HKZ K;  4Y7N E;  3S1M E;  5D4D E;  5C4X F;  2R7Z E;  2R93 F;  4BBR F;  1SMY E;  3GTK F;  3DXJ E;  1K83 F;  4OIQ E;  2A6E E;  2NVX F;  3S1Q E;  1QKL A;  2E2J F;  3S2H F;  3HOY F;  4LK1 E;  2JA8 E;  3GTP F;  3H0G F;  2JA5 F;  3GTM F;  3HOW E;  3H3V G;  3RZO E;  2VUM F;  2Y0S H;  5M5Y F;  4A3J E;  4KN4 E;  2A6H E;  5IYB F;  5FJ8 F;  5M5W F;  4A3E F;  1Y1W F;  3GTO F;  3HOV E;  5IP7 F;  5IYC E;  1Y1V F;  1I50 F;  3M3Y E;  2B63 F;  3HOZ E;  1EIK A;  3S14 E;  3S1R F;  3RZD F;  2NVT F;  1TWC F;  4A3G E;  5C44 E;  3GTJ E;  1I50 E;  3EQL E;  2PMZ K;  4Y7N F;  2R7Z F;  1HQM E;  1I3Q F;  1WCM E;  4G7H E;  4KN7 E;  5TMC E;  4C2M F;  2O5I E;  4C3J E;  3S1Q F;  3I4N E;  1SFO E;  4BY1 F;  2WAQ H;  2YU9 E;  3H3V F;  2JA8 F;  3HOW F;  4A3B F;  3RZO F;  2NVQ E;  2E2H F;  4A3J F;  3GTG E;  3GTQ E;  5FLM E;  4XLN E;  2R92 E;  5D4C E;  4YG2 E;  4BY7 E;  5M3F E;  3CQZ E;  4A3L E;  2WB1 H;  3HOZ F;  5M5X E;  4C3I E;  2NVY E;  3S14 F;  3S16 E;  3PO2 E;  4A3G F;  5C44 F;  3GTJ F;  1DZF A;  4MEX E;  5BYH E;  1I6V E;  5D4E E;  3K7A E;  4AYB H;  5C3E E;  1TWH E;  2CW0 E;  4C3J F;  3S1M F;  2JA6 E;  2WB1 I;  3S2D E;  1SFO F;  3S1N E;  4OIN E;  2Y0S I;  3S17 E;  4XSZ E;  1TWA E;  4A3K E;  2NVQ F;  2JA7 E;  3GTG F;  4X6A E;  4A3F E;  3GTQ F;  4JK1 E;  5IPL E;  5FLM F;  2WAQ K;  4YFN E;  2R92 F;  4GZY E;  4A3C E;  4BY7 F;  3CQZ F;  5TMF E;  1TWG E;  4C3H E;  3FKI E;  4A3I E;  3M4O E;  4YFX E;  5M5X F;  2O5J E;  3HOV F;  2NVY F;  4G7O E;  3HOX E;  3HOU E;  4LJZ E;  4XSX E;  5M3M E;  3S15 E;  3PO2 F;  4YFK E;  5IYC F;  5IYD E;  5C4J E;  4MEY E;  2A69 E;  2E2I E;  2JA5 E;  4OIO E;  3M3Y F;  3I4M E;  4LLG E;  4BBS F;  4BBS E;  2BE5 E;  1YNJ K;  4BXX E;  3K7A F;  1R9T E;  4LK0 E;  1TWH F;  1TWF E; 
#chains in the Genus database with same CATH homology
 2JA6 F;  4KMU E;  1WCM F;  3S1N F;  3S17 F;  4AYB K;  1TWA F;  4A3K F;  4Q4Z E;  4G7Z E;  2JA7 F;  4X6A F;  4A3F F;  1ZYR E;  5E17 E;  3I4N F;  4A3C F;  2YU9 F;  4MQ9 E;  4Q5S E;  5E18 E;  1TWG F;  4C3H F;  3FKI F;  4A3I F;  3M4O F;  2PPB E;  1YNN K;  3HOX F;  3HOU F;  3WOD E;  5M3M F;  3S15 F;  5M3F F;  4A3L F;  2E2I F;  5IYD F;  5C4J F;  3I4M F;  4C3I F;  4BXX F;  1R9T F;  1TWF F;  4OIP E;  3S16 F;  3PO3 F;  4A3M F;  4XLP E;  1I6H F;  5IP9 F;  4A3D F;  5C3E F;  3GTL F;  2A68 E;  3S2D F;  4A93 F;  2KRX A;  1IW7 E;  4ZH4 E;  4OIR E;  4QIW K;  4Y52 F;  3HKZ K;  5D4D E;  5C4X F;  2R93 F;  4BBR F;  1SMY E;  3GTK F;  3DXJ E;  1K83 F;  4OIQ E;  2A6E E;  2NVX F;  1QKL A;  2E2J F;  3S2H F;  3HOY F;  4LK1 E;  3GTP F;  3H0G F;  2JA5 F;  3GTM F;  3H3V G;  2VUM F;  4A3E F;  5M5Y F;  4BBS F;  4KN4 E;  2A6H E;  5IYB F;  5FJ8 F;  5M5W F;  1Y1W F;  3GTO F;  5IP7 F;  1Y1V F;  2B63 F;  3S1R F;  3RZD F;  2NVT F;  1TWC F;  3EQL E;  4Y7N F;  2PMZ K;  2R7Z F;  1HQM E;  1I3Q F;  4G7H E;  4KN7 E;  5TMC E;  4C2M F;  2O5I E;  3S1Q F;  4A3B F;  4BY1 F;  2JA8 F;  3HOW F;  3RZO F;  2E2H F;  4A3J F;  4XLN E;  5D4C E;  4YG2 E;  3HOZ F;  3S14 F;  4A3G F;  5C44 F;  3GTJ F;  4MEX E;  5BYH E;  1I6V E;  5D4E E;  2CW0 E;  4C3J F;  3S1M F;  2WB1 I;  1SFO F;  4OIN E;  2Y0S I;  4XSZ E;  2NVQ F;  3GTG F;  3GTQ F;  4JK1 E;  5IPL E;  5FLM F;  2WAQ K;  4YFN E;  2R92 F;  4GZY E;  4BY7 F;  3CQZ F;  5TMF E;  4YFX E;  5M5X F;  2O5J E;  3HOV F;  2NVY F;  4G7O E;  4LJZ E;  4XSX E;  3PO2 F;  4YFK E;  5IYC F;  1TWH F;  4MEY E;  2A69 E;  4OIO E;  3M3Y F;  4LLG E;  2BE5 E;  1YNJ K;  3K7A F;  4LK0 E;  1I50 F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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