2OK4D

Crystal structure of aromatic amine dehydrogenase ttq-phenylacetaldehyde adduct oxidized with ferricyanide
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
Knots found
sequence length
110
structure length
109
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aromatic amine dehydrogenase, small subunit
publication title New insights into the reductive half-reaction mechanism of aromatic amine dehydrogenase revealed by reaction with carbinolamine substrates.
pubmed doi rcsb
total genus 28
structure length 109
sequence length 110
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2ok4D00
3L4OC 2I0TD 2AGWD 2GC7B 3C75L 4L3GC 2H3XB 2IUPD 3RN0C 2AGZD 2HKMD 4FA4C 1MAFL 2AGLD 3SJLC 1MG2B 2HJBD 4FA9C 1MAEL 2AH0D 4FAVC 2OIZD 2MTAL 4Y5RC 4L3HC 3RLMC 2IUQD 4FA5C 2AGYD 3L4MC 3ORVC 2I0RD 2MADL 3SLEC 2OK4D 2J56L 3SXTC 4FB1C 2BBKL 2Q7QD 2I0SD 2J55L 3PXTC 4O1QC 4L1QC 1MDAL 1MG3B 2GC4B 2HJ4D 2HKRD 2IURD 2HXCD 2J57K 3PXWC 3RN1C 3RMZC 2OJYD 4FA1C 3PXSC 2IAAB 2H47B 2IUVD 4FANC 3SVWC 3SWSC 4K3IC 2OK6D 2AH1D 2AGXD
chains in the Genus database with same CATH superfamily
3L4OC 2I0TD 2AGWD 2GC7B 3C75L 4L3GC 2H3XB 2IUPD 3RN0C 2AGZD 2HKMD 4FA4C 1MAFL 2AGLD 3SJLC 1MG2B 2HJBD 4FA9C 1MAEL 2AH0D 4FAVC 2OIZD 2MTAL 4Y5RC 4L3HC 3RLMC 2IUQD 4FA5C 2AGYD 3L4MC 3ORVC 2I0RD 2MADL 3SLEC 2OK4D 2J56L 3SXTC 4FB1C 2BBKL 2Q7QD 2I0SD 2J55L 3PXTC 4O1QC 4L1QC 1MDAL 1MG3B 2GC4B 2HJ4D 2HKRD 2IURD 2HXCD 2J57K 3PXWC 3RN1C 3RMZC 2OJYD 4FA1C 3PXSC 2IAAB 2H47B 2IUVD 4FANC 3SVWC 3SWSC 4K3IC 2OK6D 2AH1D 2AGXD
chains in the Genus database with same CATH topology
3L4OC 2I0TD 2AGWD 2GC7B 3C75L 4L3GC 2H3XB 2IUPD 3RN0C 2AGZD 2HKMD 4FA4C 1MAFL 2AGLD 3SJLC 1MG2B 2HJBD 4FA9C 1MAEL 2AH0D 4FAVC 2OIZD 2MTAL 4Y5RC 4L3HC 3RLMC 2IUQD 4FA5C 2AGYD 3L4MC 3ORVC 2I0RD 2MADL 3SLEC 2OK4D 2J56L 3SXTC 4FB1C 2BBKL 2Q7QD 2I0SD 2J55L 3PXTC 4O1QC 4L1QC 1MDAL 1MG3B 2GC4B 2HJ4D 2HKRD 2IURD 2HXCD 2J57K 3PXWC 3RN1C 3RMZC 2OJYD 4FA1C 3PXSC 2IAAB 2H47B 2IUVD 4FANC 3SVWC 3SWSC 4K3IC 2OK6D 2AH1D 2AGXD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L4O C;  2I0T D;  2AGW D;  2GC7 B;  3C75 L;  4L3G C;  2H3X B;  2IUP D;  3RN0 C;  2AGZ D;  2HKM D;  4FA4 C;  1MAF L;  2AGL D;  3SJL C;  1MG2 B;  2HJB D;  4FA9 C;  1MAE L;  2AH0 D;  4FAV C;  2OIZ D;  2MTA L;  4Y5R C;  4L3H C;  3RLM C;  2IUQ D;  4FA5 C;  2AGY D;  3L4M C;  3ORV C;  2I0R D;  2MAD L;  3SLE C;  2OK4 D;  2J56 L;  3SXT C;  4FB1 C;  2BBK L;  2Q7Q D;  2I0S D;  2J55 L;  3PXT C;  4O1Q C;  4L1Q C;  1MDA L;  1MG3 B;  2GC4 B;  2HJ4 D;  2HKR D;  2IUR D;  2HXC D;  2J57 K;  3PXW C;  3RN1 C;  3RMZ C;  2OJY D;  4FA1 C;  3PXS C;  2IAA B;  2H47 B;  2IUV D;  4FAN C;  3SVW C;  3SWS C;  4K3I C;  2OK6 D;  2AH1 D;  2AGX D; 
#chains in the Genus database with same CATH topology
 3L4O C;  2I0T D;  2AGW D;  2GC7 B;  3C75 L;  4L3G C;  2H3X B;  2IUP D;  3RN0 C;  2AGZ D;  2HKM D;  4FA4 C;  1MAF L;  2AGL D;  3SJL C;  1MG2 B;  2HJB D;  4FA9 C;  1MAE L;  2AH0 D;  4FAV C;  2OIZ D;  2MTA L;  4Y5R C;  4L3H C;  3RLM C;  2IUQ D;  4FA5 C;  2AGY D;  3L4M C;  3ORV C;  2I0R D;  2MAD L;  3SLE C;  2OK4 D;  2J56 L;  3SXT C;  4FB1 C;  2BBK L;  2Q7Q D;  2I0S D;  2J55 L;  3PXT C;  4O1Q C;  4L1Q C;  1MDA L;  1MG3 B;  2GC4 B;  2HJ4 D;  2HKR D;  2IUR D;  2HXC D;  2J57 K;  3PXW C;  3RN1 C;  3RMZ C;  2OJY D;  4FA1 C;  3PXS C;  2IAA B;  2H47 B;  2IUV D;  4FAN C;  3SVW C;  3SWS C;  4K3I C;  2OK6 D;  2AH1 D;  2AGX D; 
#chains in the Genus database with same CATH homology
 3L4O C;  2I0T D;  2AGW D;  2GC7 B;  3C75 L;  4L3G C;  2H3X B;  2IUP D;  3RN0 C;  2AGZ D;  2HKM D;  4FA4 C;  1MAF L;  2AGL D;  3SJL C;  1MG2 B;  2HJB D;  4FA9 C;  1MAE L;  2AH0 D;  4FAV C;  2OIZ D;  2MTA L;  4Y5R C;  4L3H C;  3RLM C;  2IUQ D;  4FA5 C;  2AGY D;  3L4M C;  3ORV C;  2I0R D;  2MAD L;  3SLE C;  2OK4 D;  2J56 L;  3SXT C;  4FB1 C;  2BBK L;  2Q7Q D;  2I0S D;  2J55 L;  3PXT C;  4O1Q C;  4L1Q C;  1MDA L;  1MG3 B;  2GC4 B;  2HJ4 D;  2HKR D;  2IUR D;  2HXC D;  2J57 K;  3PXW C;  3RN1 C;  3RMZ C;  2OJY D;  4FA1 C;  3PXS C;  2IAA B;  2H47 B;  2IUV D;  4FAN C;  3SVW C;  3SWS C;  4K3I C;  2OK6 D;  2AH1 D;  2AGX D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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