2P4BA

Crystal structure of e.coli rseb
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
291
structure length
284
Chain Sequence
ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Sigma-E factor regulatory protein rseB
publication title Crystal structure of RseB and a model of its binding mode to RseA
pubmed doi rcsb
source organism Escherichia coli k12
total genus 70
structure length 284
sequence length 291
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2007-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03888 MucB_RseB MucB/RseB N-terminal domain
A PF17188 MucB_RseB_C MucB/RseB C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.50.20.10 Mainly Beta Clam outer membrane lipoprotein receptor (LolB), chain A Lipoprotein localisation LolA/LolB/LppX 2p4bA01
4KI3A 4MXTA 3WJUA 3WJTA 2YZYA 3KSNA 2W7QA 1IWNA 3WJVA 1IWMA 4Z48A 2ZPDA 2ZPCA 2V42A 2V43A 3BUUA 1IWLA 1UA8A 2P4BA 3BK5A 3M4WA
chains in the Genus database with same CATH superfamily
4QA8A 2BYOA 4KI3A 4MXTA 3WJUA 4EG9A 2ZF3A 3WJTA 2YZYA 3KSNA 2W7QA 3BMZA 1IWNA 3WJVA 1IWMA 3MHAA 3MH8A 4Z48A 2ZPDA 3MH9A 2ZPCA 2V42A 4ZRAA 2V43A 3BUUA 1IWLA 1UA8A 2ZF4A 2P4BA 4EGDA 3BK5A 3M4WA
chains in the Genus database with same CATH topology
4KI3A 4MXTA 3WJUA 3WJTA 2YZYA 3KSNA 2W7QA 1IWNA 3WJVA 1IWMA 4Z48A 2ZPDA 2ZPCA 2V42A 2V43A 3BUUA 1IWLA 1UA8A 2P4BA 3BK5A 3M4WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KI3 A;  4MXT A;  3WJU A;  3WJT A;  2YZY A;  3KSN A;  2W7Q A;  1IWN A;  3WJV A;  1IWM A;  4Z48 A;  2ZPD A;  2ZPC A;  2V42 A;  2V43 A;  3BUU A;  1IWL A;  1UA8 A;  2P4B A;  3BK5 A;  3M4W A; 
#chains in the Genus database with same CATH topology
 4QA8 A;  2BYO A;  4KI3 A;  4MXT A;  3WJU A;  4EG9 A;  2ZF3 A;  3WJT A;  2YZY A;  3KSN A;  2W7Q A;  3BMZ A;  1IWN A;  3WJV A;  1IWM A;  3MHA A;  3MH8 A;  4Z48 A;  2ZPD A;  3MH9 A;  2ZPC A;  2V42 A;  4ZRA A;  2V43 A;  3BUU A;  1IWL A;  1UA8 A;  2ZF4 A;  2P4B A;  4EGD A;  3BK5 A;  3M4W A; 
#chains in the Genus database with same CATH homology
 4KI3 A;  4MXT A;  3WJU A;  3WJT A;  2YZY A;  3KSN A;  2W7Q A;  1IWN A;  3WJV A;  1IWM A;  4Z48 A;  2ZPD A;  2ZPC A;  2V42 A;  2V43 A;  3BUU A;  1IWL A;  1UA8 A;  2P4B A;  3BK5 A;  3M4W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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