2PUMA

Crystal structure of bovine lactoperoxidase complex with catechol and iodide at 2.7 a resolution
Total Genus 189
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
publication title Crystal structure of bovine lactoperoxidase complex with catechol and iodide at 2.7 A resolution
rcsb
molecule keywords Lactoperoxidase
molecule tags Oxidoreductase
total genus 189
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2007-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 2pumA00
3N8WA 1Q4GA 5GLSA 2OYEP 3ERHA 1CQEA 1HT8A 3N8WB 4RRYA 4NJBA 1CVUA 2Z5ZA 3V6QA 4KVLA 1MYPC 4IG5A 3N8YA 1CXPC 2E9EA 5HPWA 1PGEA 4GN6A 4PNXA 3PY4A 4QJQA 4RRWA 2GJMA 5IKRA 4HHSA 3OLTA 3UBAA 5JVYA 3ZS1C 1HT5A 4COXA 3QL6A 4LJJA 3SXVA 3FNLA 4OEKA 1FE2A 4RRXA 3KRKA 3BXIA 3NIUA 2AYLA 3R55A 3R4XA 2O86A 4O1ZA 5KIRA 2EHAA 5JW1A 5B72A 2PUMA 4OTJA 3RKEA 3NYHA 1IGZA 2OJVA 3FAQA 4RRZA 2OYUP 2R5LA 2NQXA 1PTHA 5COXA 5F1AA 3GCKA 3MDLA 1PXXA 1DIYA 3HS7A 3NTBA 3HS5A 3LN1A 1DDXA 3N8XA 1EQGA 2QPKA 4M10A 3NTGA 1PRHA 1EBVA 5IKVA 4KSZA 2QRBA 2IKCA 3HS6A 2EFBA 3LN0A 3QMOA 4NT3A 1DNUC 6COXA 5JVZA 5F19A 3N8VA 4FM5A 3QH0A 3N8ZA 5FDQA 3GC1A 3GCLA 1CX2A 5FF1A 4Y55A 3Q7DA 4RUTA 3KRQA 4C1MC 3F9PC 3Q9KA 1D5LC 3OGWA 3TGYA 3RR3A 5GH0A 1MHLC 3N8FA 4HHRA 1EQHA 1DNWC 5IKTA 3NT1A 3GCJA 2PT3A 4Z0LA 3ZS0C 2QQTA 3R5OA 5FIWC 3OLUA 3NAKA 1D7WC 3N8YB 1U67A 4OTYA 4N7AA 4E1GA 4RS0A 3R5QA 5IKQA 4QYQA 3I6NA 3TZIA 4DL1C 3QF1A 4KVKA 3S4FA 4M11A 4GM7A 3KK6A 3ERIA 3MQEA 2IPSA 1D2VC 4MSFA 4PH9A 1IGXA 4KVJA 3PGHA
chains in the Genus database with same CATH superfamily
3N8WA 1Q4GA 5GLSA 2OYEP 3ERHA 1CQEA 1HT8A 3N8WB 4RRYA 4NJBA 1CVUA 2Z5ZA 3V6QA 4KVLA 1MYPC 4IG5A 3N8YA 1CXPC 2E9EA 5HPWA 1PGEA 4GN6A 4PNXA 3PY4A 4QJQA 4RRWA 2GJMA 5IKRA 4HHSA 3OLTA 3UBAA 5JVYA 3ZS1C 1HT5A 4COXA 3QL6A 4LJJA 3SXVA 3FNLA 4OEKA 1FE2A 4RRXA 3KRKA 3BXIA 3NIUA 2AYLA 3R55A 3R4XA 2O86A 4O1ZA 5KIRA 2EHAA 5JW1A 5B72A 2PUMA 4OTJA 3RKEA 3NYHA 1IGZA 2OJVA 3FAQA 4RRZA 2OYUP 2R5LA 2NQXA 1PTHA 5COXA 5F1AA 3GCKA 3MDLA 1PXXA 1DIYA 3HS7A 3NTBA 3HS5A 3LN1A 1DDXA 3N8XA 1EQGA 2QPKA 4M10A 3NTGA 1PRHA 1EBVA 5IKVA 4KSZA 2QRBA 2IKCA 3HS6A 2EFBA 3LN0A 3QMOA 4NT3A 1DNUC 6COXA 5JVZA 5F19A 3N8VA 4FM5A 3QH0A 3N8ZA 5FDQA 3GC1A 3GCLA 1CX2A 5FF1A 4Y55A 3Q7DA 4RUTA 3KRQA 4C1MC 3F9PC 3Q9KA 1D5LC 3OGWA 3TGYA 3RR3A 5GH0A 1MHLC 3N8FA 4HHRA 1EQHA 1DNWC 5IKTA 3NT1A 3GCJA 2PT3A 4Z0LA 3ZS0C 2QQTA 3R5OA 5FIWC 3OLUA 3NAKA 1D7WC 3N8YB 1U67A 4OTYA 4N7AA 4E1GA 4RS0A 3R5QA 5IKQA 4QYQA 3I6NA 3TZIA 4DL1C 3QF1A 4KVKA 3S4FA 4M11A 4GM7A 3KK6A 3ERIA 3MQEA 2IPSA 1D2VC 4MSFA 4PH9A 1IGXA 4KVJA 3PGHA
chains in the Genus database with same CATH topology
3N8WA 1Q4GA 5GLSA 2OYEP 3ERHA 1CQEA 1HT8A 3N8WB 4RRYA 4NJBA 1CVUA 2Z5ZA 3V6QA 4KVLA 1MYPC 4IG5A 3N8YA 1CXPC 2E9EA 5HPWA 1PGEA 4GN6A 4PNXA 3PY4A 4QJQA 4RRWA 2GJMA 5IKRA 4HHSA 3OLTA 3UBAA 5JVYA 3ZS1C 1HT5A 4COXA 3QL6A 4LJJA 3SXVA 3FNLA 4OEKA 1FE2A 4RRXA 3KRKA 3BXIA 3NIUA 2AYLA 3R55A 3R4XA 2O86A 4O1ZA 5KIRA 2EHAA 5JW1A 5B72A 2PUMA 4OTJA 3RKEA 3NYHA 1IGZA 2OJVA 3FAQA 4RRZA 2OYUP 2R5LA 2NQXA 1PTHA 5COXA 5F1AA 3GCKA 3MDLA 1PXXA 1DIYA 3HS7A 3NTBA 3HS5A 3LN1A 1DDXA 3N8XA 1EQGA 2QPKA 4M10A 3NTGA 1PRHA 1EBVA 5IKVA 4KSZA 2QRBA 2IKCA 3HS6A 2EFBA 3LN0A 3QMOA 4NT3A 1DNUC 6COXA 5JVZA 5F19A 3N8VA 4FM5A 3QH0A 3N8ZA 5FDQA 3GC1A 3GCLA 1CX2A 5FF1A 4Y55A 3Q7DA 4RUTA 3KRQA 4C1MC 3F9PC 3Q9KA 1D5LC 3OGWA 3TGYA 3RR3A 5GH0A 1MHLC 3N8FA 4HHRA 1EQHA 1DNWC 5IKTA 3NT1A 3GCJA 2PT3A 4Z0LA 3ZS0C 2QQTA 3R5OA 5FIWC 3OLUA 3NAKA 1D7WC 3N8YB 1U67A 4OTYA 4N7AA 4E1GA 4RS0A 3R5QA 5IKQA 4QYQA 3I6NA 3TZIA 4DL1C 3QF1A 4KVKA 3S4FA 4M11A 4GM7A 3KK6A 3ERIA 3MQEA 2IPSA 1D2VC 4MSFA 4PH9A 1IGXA 4KVJA 3PGHA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3N8W A;  1Q4G A;  5GLS A;  2OYE P;  3ERH A;  1CQE A;  1HT8 A;  3N8W B;  4RRY A;  4NJB A;  1CVU A;  2Z5Z A;  3V6Q A;  4KVL A;  1MYP C;  4IG5 A;  3N8Y A;  1CXP C;  2E9E A;  5HPW A;  1PGE A;  4GN6 A;  4PNX A;  3PY4 A;  4QJQ A;  4RRW A;  2GJM A;  5IKR A;  4HHS A;  3OLT A;  3UBA A;  5JVY A;  3ZS1 C;  1HT5 A;  4COX A;  3QL6 A;  4LJJ A;  3SXV A;  3FNL A;  4OEK A;  1FE2 A;  4RRX A;  3KRK A;  3BXI A;  3NIU A;  2AYL A;  3R55 A;  3R4X A;  2O86 A;  4O1Z A;  5KIR A;  2EHA A;  5JW1 A;  5B72 A;  2PUM A;  4OTJ A;  3RKE A;  3NYH A;  1IGZ A;  2OJV A;  3FAQ A;  4RRZ A;  2OYU P;  2R5L A;  2NQX A;  1PTH A;  5COX A;  5F1A A;  3GCK A;  3MDL A;  1PXX A;  1DIY A;  3HS7 A;  3NTB A;  3HS5 A;  3LN1 A;  1DDX A;  3N8X A;  1EQG A;  2QPK A;  4M10 A;  3NTG A;  1PRH A;  1EBV A;  5IKV A;  4KSZ A;  2QRB A;  2IKC A;  3HS6 A;  2EFB A;  3LN0 A;  3QMO A;  4NT3 A;  1DNU C;  6COX A;  5JVZ A;  5F19 A;  3N8V A;  4FM5 A;  3QH0 A;  3N8Z A;  5FDQ A;  3GC1 A;  3GCL A;  1CX2 A;  5FF1 A;  4Y55 A;  3Q7D A;  4RUT A;  3KRQ A;  4C1M C;  3F9P C;  3Q9K A;  1D5L C;  3OGW A;  3TGY A;  3RR3 A;  5GH0 A;  1MHL C;  3N8F A;  4HHR A;  1EQH A;  1DNW C;  5IKT A;  3NT1 A;  3GCJ A;  2PT3 A;  4Z0L A;  3ZS0 C;  2QQT A;  3R5O A;  5FIW C;  3OLU A;  3NAK A;  1D7W C;  3N8Y B;  1U67 A;  4OTY A;  4N7A A;  4E1G A;  4RS0 A;  3R5Q A;  5IKQ A;  4QYQ A;  3I6N A;  3TZI A;  4DL1 C;  3QF1 A;  4KVK A;  3S4F A;  4M11 A;  4GM7 A;  3KK6 A;  3ERI A;  3MQE A;  2IPS A;  1D2V C;  4MSF A;  4PH9 A;  1IGX A;  4KVJ A;  3PGH A; 
#chains in the Genus database with same CATH topology
 3N8W A;  1Q4G A;  5GLS A;  2OYE P;  3ERH A;  1CQE A;  1HT8 A;  3N8W B;  4RRY A;  4NJB A;  1CVU A;  2Z5Z A;  3V6Q A;  4KVL A;  1MYP C;  4IG5 A;  3N8Y A;  1CXP C;  2E9E A;  5HPW A;  1PGE A;  4GN6 A;  4PNX A;  3PY4 A;  4QJQ A;  4RRW A;  2GJM A;  5IKR A;  4HHS A;  3OLT A;  3UBA A;  5JVY A;  3ZS1 C;  1HT5 A;  4COX A;  3QL6 A;  4LJJ A;  3SXV A;  3FNL A;  4OEK A;  1FE2 A;  4RRX A;  3KRK A;  3BXI A;  3NIU A;  2AYL A;  3R55 A;  3R4X A;  2O86 A;  4O1Z A;  5KIR A;  2EHA A;  5JW1 A;  5B72 A;  2PUM A;  4OTJ A;  3RKE A;  3NYH A;  1IGZ A;  2OJV A;  3FAQ A;  4RRZ A;  2OYU P;  2R5L A;  2NQX A;  1PTH A;  5COX A;  5F1A A;  3GCK A;  3MDL A;  1PXX A;  1DIY A;  3HS7 A;  3NTB A;  3HS5 A;  3LN1 A;  1DDX A;  3N8X A;  1EQG A;  2QPK A;  4M10 A;  3NTG A;  1PRH A;  1EBV A;  5IKV A;  4KSZ A;  2QRB A;  2IKC A;  3HS6 A;  2EFB A;  3LN0 A;  3QMO A;  4NT3 A;  1DNU C;  6COX A;  5JVZ A;  5F19 A;  3N8V A;  4FM5 A;  3QH0 A;  3N8Z A;  5FDQ A;  3GC1 A;  3GCL A;  1CX2 A;  5FF1 A;  4Y55 A;  3Q7D A;  4RUT A;  3KRQ A;  4C1M C;  3F9P C;  3Q9K A;  1D5L C;  3OGW A;  3TGY A;  3RR3 A;  5GH0 A;  1MHL C;  3N8F A;  4HHR A;  1EQH A;  1DNW C;  5IKT A;  3NT1 A;  3GCJ A;  2PT3 A;  4Z0L A;  3ZS0 C;  2QQT A;  3R5O A;  5FIW C;  3OLU A;  3NAK A;  1D7W C;  3N8Y B;  1U67 A;  4OTY A;  4N7A A;  4E1G A;  4RS0 A;  3R5Q A;  5IKQ A;  4QYQ A;  3I6N A;  3TZI A;  4DL1 C;  3QF1 A;  4KVK A;  3S4F A;  4M11 A;  4GM7 A;  3KK6 A;  3ERI A;  3MQE A;  2IPS A;  1D2V C;  4MSF A;  4PH9 A;  1IGX A;  4KVJ A;  3PGH A; 
#chains in the Genus database with same CATH homology
 3N8W A;  1Q4G A;  5GLS A;  2OYE P;  3ERH A;  1CQE A;  1HT8 A;  3N8W B;  4RRY A;  4NJB A;  1CVU A;  2Z5Z A;  3V6Q A;  4KVL A;  1MYP C;  4IG5 A;  3N8Y A;  1CXP C;  2E9E A;  5HPW A;  1PGE A;  4GN6 A;  4PNX A;  3PY4 A;  4QJQ A;  4RRW A;  2GJM A;  5IKR A;  4HHS A;  3OLT A;  3UBA A;  5JVY A;  3ZS1 C;  1HT5 A;  4COX A;  3QL6 A;  4LJJ A;  3SXV A;  3FNL A;  4OEK A;  1FE2 A;  4RRX A;  3KRK A;  3BXI A;  3NIU A;  2AYL A;  3R55 A;  3R4X A;  2O86 A;  4O1Z A;  5KIR A;  2EHA A;  5JW1 A;  5B72 A;  2PUM A;  4OTJ A;  3RKE A;  3NYH A;  1IGZ A;  2OJV A;  3FAQ A;  4RRZ A;  2OYU P;  2R5L A;  2NQX A;  1PTH A;  5COX A;  5F1A A;  3GCK A;  3MDL A;  1PXX A;  1DIY A;  3HS7 A;  3NTB A;  3HS5 A;  3LN1 A;  1DDX A;  3N8X A;  1EQG A;  2QPK A;  4M10 A;  3NTG A;  1PRH A;  1EBV A;  5IKV A;  4KSZ A;  2QRB A;  2IKC A;  3HS6 A;  2EFB A;  3LN0 A;  3QMO A;  4NT3 A;  1DNU C;  6COX A;  5JVZ A;  5F19 A;  3N8V A;  4FM5 A;  3QH0 A;  3N8Z A;  5FDQ A;  3GC1 A;  3GCL A;  1CX2 A;  5FF1 A;  4Y55 A;  3Q7D A;  4RUT A;  3KRQ A;  4C1M C;  3F9P C;  3Q9K A;  1D5L C;  3OGW A;  3TGY A;  3RR3 A;  5GH0 A;  1MHL C;  3N8F A;  4HHR A;  1EQH A;  1DNW C;  5IKT A;  3NT1 A;  3GCJ A;  2PT3 A;  4Z0L A;  3ZS0 C;  2QQT A;  3R5O A;  5FIW C;  3OLU A;  3NAK A;  1D7W C;  3N8Y B;  1U67 A;  4OTY A;  4N7A A;  4E1G A;  4RS0 A;  3R5Q A;  5IKQ A;  4QYQ A;  3I6N A;  3TZI A;  4DL1 C;  3QF1 A;  4KVK A;  3S4F A;  4M11 A;  4GM7 A;  3KK6 A;  3ERI A;  3MQE A;  2IPS A;  1D2V C;  4MSF A;  4PH9 A;  1IGX A;  4KVJ A;  3PGH A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite