2PXFA

Variant 5 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxfA00
1QB2A 2PXKA 5GAGi 1QZXA 3KL4A 2V3CC 2PXLA 2PXEA 2PXPA 2PXFA 1MFQC 3DM5A 1DULA 2FFHA 2PXDA 2PXVA 1HQ1A 2PXUA 2JQEA 2XXAA 3LQXA 5GAHi 3NDBB 2PXTA 2PXQA 2PXBA
chains in the Genus database with same CATH superfamily
2O4AA 3BS3A 3SCHA 4YBAA 4DE9A 2R1JL 2BJCA 3KXAA 1RZSA 1VPWA 1WH6A 4Y42A 3GZCA 1ADRA 2OFYA 4O8BA 3OQNA 3VK0A 3A9YA 3GN5A 2BNNA 2LCVA 4EZIA 3H5TA 4GHJA 3MEJA 4PU7A 1DWKA 3FYMA 4PU8A 1GT0C 3KL4A 3OWQA 3NXHA 2IU7A 2B5AA 3R1FA 2KEIA 4Q2JA 2PPXA 4FBIA 1PERL 1EFAA 4ER7A 3ME5A 3OQMA 3GBFA 2ICTA 3CLCA 2IVBA 1UXDA 1PNRA 1LQCA 4YARA 3QOWA 2PXKA 2PXPA 2LYQA 4MCXA 1QP4A 1QP0A 2JVLA 3CROL 2JQEA 1ZZ7A 4NDWA 3PXPA 3OKZA 3D1NI 1RIOA 2PIJA 2XI8A 3A9XA 4Z5DA 3QQ6A 1ZPQA 1LMB3 4I8TA 4X4BA 4IWRA 2J7WA 5DRTA 2LYKA 1L1MA 3DM5A 4X4IA 1DULA 2CSFA 2PXUA 1UXCA 1QQAA 2HCSA 3KZ3A 1ZZCA 1CJGA 2ODRD 1XWRA 4MCTA 3EUSA 1UTXA 3BD1A 5JUWA 2HFZA 2ICPA 3OP9A 4X4DA 5A7LA 3GZDC 1X2LA 2PUAA 2AXUA 1ZVVA 2AW6A 1AU7A 3NDBB 3F52A 2OR1L 3SCGA 2LNMA 4OBMA 2PUGA 1LCDA 3JXBC 1QPZA 2AWIA 1ZZ8A 5DRYA 4Z59A 2LYJA 2L8NA 2XXAA 1WIZA 2CROA 3QOXA 2EBYA 1PRUA 3HZIB 1QP7A 1Y7YA 4JQDA 2KPJA 2PXEA 2BNOA 3TRBA 3VWSA 1SQ8A 3LISA 2WIUB 2H8RA 2MQKA 4YG1A 3TFLA 1BDIA 2O38A 2PUBA 1E3OC 2O49A 2KEKA 4PU4C 2GRMA 2L1PA 3GZDA 1Y9QA 3FYAA 2V3CC 2GRLA 2LYSA 2A6CA 3TELA 4JCYA 4EKGA 2AUWA 2HCNA 2FJRA 1LCCA 4Z5HA 2PXVA 3NZLA 2PUEA 2R63A 4DE8A 1JFSA 4JCXA 4IVZA 5DT2A 2KEJA 4HRAA 4I6TA 2L49A 3R09A 5DSXA 2IV1A 2XCJA 2HINA 4ER0A 1QZXA 3DNVB 3LFPA 1MFQC 3A9ZA 2LYPA 2IVGA 3F51A 1HQ1A 2J7UA 3G0TA 3SX0A 2XSDC 2D5VA 3ZPXA 5GAHi 4IA8A 2EWTA 1ZZ9A 2EF8A 1BDHA 2GZUA 1HF0A 4WVLA 2PE5A 3F6WA 4F8DA 2M4HA 4X4HA 1NW3A 3JXDL 1IC8A 4ER6A 3QYXA 5DTQA 1QB2A 2MEZA 4I6UA 4Z5CA 3G7DA 1QQBA 2PXLA 3SCFA 3O9XA 4X4FA 5DTRA 3IVPA 2AXVA 2PXDA 3OQOA 3LQXA 2HSGA 3UWPA 4EKIA 1X57A 4J1WA 5GAGi 2YBDA 4X4EA 1O4XA 1OSLA 1B0NA 1NERA 3KJXA 2PXFA 2XJ3A 4I6RA 4X4CA 3G5GA 1WETA 2PUDA 3UFDA 4ER3A 2IUOA 4ER5A 3JXCL 1RZRA 3M9LA 2PXTA 1JFTA 4EK9A 4OB4A 4X4GA 3SR4A 3QWGA 2JCGA 3MLFA 1LLIA 3OMTA 3RZZA 2VEOA 3ZHMA 2PUCA 3GUUA 3B7HA 1RZRD 2FFHA 2AXZA 1OCTC 1RPEL 1PRVA 2PXBA 4GQMA 3TEPA 3ZHIA 4EQZA 3ZKCA 2XXPA 1R63A 1DW9A 1ZS4A 1ZUGA 2PUFA 4PU3C 3GN5B 2LYRA 1JWLA 3QF3A 2XXQA 1JH9A 2LLWA 1YSEA 5K98B 1U2ZA 2LLVA 4J1XA 3NROA 3L1PA 2KZ8A 1CQTA 4FN3A 1NEQA 1ZZBA 1POUA 2WUSR 4YG4A 2PXQA 3FMYA 4Z58A 4YG7B 1S7EA 1ZAYA 2IVQA 1R69A 2XIUA 2MXDA 3S8QA 2LYLA 5DTMA 3U3WA 1ZZ6A 1PRAA 3BDNA 3QFIA 3PE5A 2BNMA 3CECA 1WH8A
chains in the Genus database with same CATH topology
1QB2A 2PXKA 5GAGi 1QZXA 3KL4A 2V3CC 2PXLA 2PXEA 2PXPA 2PXFA 1MFQC 3DM5A 1DULA 2FFHA 2PXDA 2PXVA 1HQ1A 2PXUA 2JQEA 2XXAA 3LQXA 5GAHi 3NDBB 2PXTA 2PXQA 2PXBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QB2 A;  2PXK A;  5GAG i;  1QZX A;  3KL4 A;  2V3C C;  2PXL A;  2PXE A;  2PXP A;  2PXF A;  1MFQ C;  3DM5 A;  1DUL A;  2FFH A;  2PXD A;  2PXV A;  1HQ1 A;  2PXU A;  2JQE A;  2XXA A;  3LQX A;  5GAH i;  3NDB B;  2PXT A;  2PXQ A;  2PXB A; 
#chains in the Genus database with same CATH topology
 2O4A A;  3BS3 A;  3SCH A;  4YBA A;  4DE9 A;  2R1J L;  2BJC A;  3KXA A;  1RZS A;  1VPW A;  1WH6 A;  4Y42 A;  3GZC A;  1ADR A;  2OFY A;  4O8B A;  3OQN A;  3VK0 A;  3A9Y A;  3GN5 A;  2BNN A;  2LCV A;  4EZI A;  3H5T A;  4GHJ A;  3MEJ A;  4PU7 A;  1DWK A;  3FYM A;  4PU8 A;  1GT0 C;  3KL4 A;  3OWQ A;  3NXH A;  2IU7 A;  2B5A A;  3R1F A;  2KEI A;  4Q2J A;  2PPX A;  4FBI A;  1PER L;  1EFA A;  4ER7 A;  3ME5 A;  3OQM A;  3GBF A;  2ICT A;  3CLC A;  2IVB A;  1UXD A;  1PNR A;  1LQC A;  4YAR A;  3QOW A;  2PXK A;  2PXP A;  2LYQ A;  4MCX A;  1QP4 A;  1QP0 A;  2JVL A;  3CRO L;  2JQE A;  1ZZ7 A;  4NDW A;  3PXP A;  3OKZ A;  3D1N I;  1RIO A;  2PIJ A;  2XI8 A;  3A9X A;  4Z5D A;  3QQ6 A;  1ZPQ A;  1LMB 3;  4I8T A;  4X4B A;  4IWR A;  2J7W A;  5DRT A;  2LYK A;  1L1M A;  3DM5 A;  4X4I A;  1DUL A;  2CSF A;  2PXU A;  1UXC A;  1QQA A;  2HCS A;  3KZ3 A;  1ZZC A;  1CJG A;  2ODR D;  1XWR A;  4MCT A;  3EUS A;  1UTX A;  3BD1 A;  5JUW A;  2HFZ A;  2ICP A;  3OP9 A;  4X4D A;  5A7L A;  3GZD C;  1X2L A;  2PUA A;  2AXU A;  1ZVV A;  2AW6 A;  1AU7 A;  3NDB B;  3F52 A;  2OR1 L;  3SCG A;  2LNM A;  4OBM A;  2PUG A;  1LCD A;  3JXB C;  1QPZ A;  2AWI A;  1ZZ8 A;  5DRY A;  4Z59 A;  2LYJ A;  2L8N A;  2XXA A;  1WIZ A;  2CRO A;  3QOX A;  2EBY A;  1PRU A;  3HZI B;  1QP7 A;  1Y7Y A;  4JQD A;  2KPJ A;  2PXE A;  2BNO A;  3TRB A;  3VWS A;  1SQ8 A;  3LIS A;  2WIU B;  2H8R A;  2MQK A;  4YG1 A;  3TFL A;  1BDI A;  2O38 A;  2PUB A;  1E3O C;  2O49 A;  2KEK A;  4PU4 C;  2GRM A;  2L1P A;  3GZD A;  1Y9Q A;  3FYA A;  2V3C C;  2GRL A;  2LYS A;  2A6C A;  3TEL A;  4JCY A;  4EKG A;  2AUW A;  2HCN A;  2FJR A;  1LCC A;  4Z5H A;  2PXV A;  3NZL A;  2PUE A;  2R63 A;  4DE8 A;  1JFS A;  4JCX A;  4IVZ A;  5DT2 A;  2KEJ A;  4HRA A;  4I6T A;  2L49 A;  3R09 A;  5DSX A;  2IV1 A;  2XCJ A;  2HIN A;  4ER0 A;  1QZX A;  3DNV B;  3LFP A;  1MFQ C;  3A9Z A;  2LYP A;  2IVG A;  3F51 A;  1HQ1 A;  2J7U A;  3G0T A;  3SX0 A;  2XSD C;  2D5V A;  3ZPX A;  5GAH i;  4IA8 A;  2EWT A;  1ZZ9 A;  2EF8 A;  1BDH A;  2GZU A;  1HF0 A;  4WVL A;  2PE5 A;  3F6W A;  4F8D A;  2M4H A;  4X4H A;  1NW3 A;  3JXD L;  1IC8 A;  4ER6 A;  3QYX A;  5DTQ A;  1QB2 A;  2MEZ A;  4I6U A;  4Z5C A;  3G7D A;  1QQB A;  2PXL A;  3SCF A;  3O9X A;  4X4F A;  5DTR A;  3IVP A;  2AXV A;  2PXD A;  3OQO A;  3LQX A;  2HSG A;  3UWP A;  4EKI A;  1X57 A;  4J1W A;  5GAG i;  2YBD A;  4X4E A;  1O4X A;  1OSL A;  1B0N A;  1NER A;  3KJX A;  2PXF A;  2XJ3 A;  4I6R A;  4X4C A;  3G5G A;  1WET A;  2PUD A;  3UFD A;  4ER3 A;  2IUO A;  4ER5 A;  3JXC L;  1RZR A;  3M9L A;  2PXT A;  1JFT A;  4EK9 A;  4OB4 A;  4X4G A;  3SR4 A;  3QWG A;  2JCG A;  3MLF A;  1LLI A;  3OMT A;  3RZZ A;  2VEO A;  3ZHM A;  2PUC A;  3GUU A;  3B7H A;  1RZR D;  2FFH A;  2AXZ A;  1OCT C;  1RPE L;  1PRV A;  2PXB A;  4GQM A;  3TEP A;  3ZHI A;  4EQZ A;  3ZKC A;  2XXP A;  1R63 A;  1DW9 A;  1ZS4 A;  1ZUG A;  2PUF A;  4PU3 C;  3GN5 B;  2LYR A;  1JWL A;  3QF3 A;  2XXQ A;  1JH9 A;  2LLW A;  1YSE A;  5K98 B;  1U2Z A;  2LLV A;  4J1X A;  3NRO A;  3L1P A;  2KZ8 A;  1CQT A;  4FN3 A;  1NEQ A;  1ZZB A;  1POU A;  2WUS R;  4YG4 A;  2PXQ A;  3FMY A;  4Z58 A;  4YG7 B;  1S7E A;  1ZAY A;  2IVQ A;  1R69 A;  2XIU A;  2MXD A;  3S8Q A;  2LYL A;  5DTM A;  3U3W A;  1ZZ6 A;  1PRA A;  3BDN A;  3QFI A;  3PE5 A;  2BNM A;  3CEC A;  1WH8 A; 
#chains in the Genus database with same CATH homology
 1QB2 A;  2PXK A;  5GAG i;  1QZX A;  3KL4 A;  2V3C C;  2PXL A;  2PXE A;  2PXP A;  2PXF A;  1MFQ C;  3DM5 A;  1DUL A;  2FFH A;  2PXD A;  2PXV A;  1HQ1 A;  2PXU A;  2JQE A;  2XXA A;  3LQX A;  5GAH i;  3NDB B;  2PXT A;  2PXQ A;  2PXB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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