2PXUA

Variant 16 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxuA00
2PXUA 2PXQA 3DM5A 2PXFA 1MFQC 1DULA 3KL4A 3LQXA 1HQ1A 2FFHA 5GAHi 1QB2A 2JQEA 5GAGi 2PXBA 2PXPA 2PXVA 3NDBB 2PXLA 2PXTA 2V3CC 2PXDA 2PXKA 2XXAA 2PXEA 1QZXA
chains in the Genus database with same CATH superfamily
3QFIA 3A9ZA 1WIZA 4JCYA 4GHJA 2KEJA 4IVZA 5GAHi 4DE8A 3TFLA 4IWRA 4PU4C 1DWKA 5GAGi 2GRLA 2XXQA 2PXLA 1WETA 2XJ3A 3ZKCA 2XSDC 3O9XA 2PXQA 1U2ZA 5DRTA 3SCFA 1ZUGA 3NROA 2HCNA 3NXHA 5A7LA 3ME5A 2MXDA 2XXPA 1LCCA 4EKIA 1B0NA 2PXTA 3GZCA 3DM5A 1ZZ7A 5DRYA 2R63A 1R69A 1PRUA 2FFHA 3OQNA 4Y42A 3FMYA 1RZRA 4YG1A 3R1FA 1QZXA 3UWPA 1JFTA 2OFYA 1PERL 4OBMA 2EF8A 4X4GA 3GN5B 3ZPXA 3QYXA 1RIOA 3OP9A 4YARA 2EBYA 4YG4A 4I8TA 4X4FA 1S7EA 4X4CA 1LLIA 2J7WA 4PU3C 4X4IA 2JVLA 1PRVA 3QQ6A 4EQZA 2CSFA 2LLWA 4X4HA 2XI8A 4HRAA 1CQTA 3BDNA 3FYMA 2M4HA 2PXBA 3HZIB 3A9YA 4Z5DA 4JQDA 3NDBB 3EUSA 3L1PA 2B5AA 3UFDA 5DTRA 2XXAA 2LYQA 2XIUA 3OWQA 3KJXA 3S8QA 1X2LA 1DULA 4Z58A 3A9XA 4ER5A 4ER6A 1QB2A 3MEJA 1QPZA 1WH8A 1GT0C 4J1XA 1ZPQA 2O4AA 1JWLA 3GZDA 1LQCA 1OCTC 5DSXA 3GN5A 1MFQC 3JXCL 3OMTA 3SX0A 5JUWA 2PXVA 1YSEA 1O4XA 4GQMA 4O8BA 2EWTA 2LYKA 3SCHA 1VPWA 2PXUA 3U3WA 2KEKA 1RZSA 2CROA 4FBIA 1NERA 2D5VA 2PUDA 1ADRA 3KZ3A 3RZZA 2JQEA 4Q2JA 4EK9A 2LCVA 2HFZA 4MCXA 3TELA 4YBAA 2PUGA 5DTQA 1ZZ6A 3G7DA 3FYAA 3BD1A 2LYJA 3QWGA 1IC8A 2H8RA 3VK0A 4ER3A 1UXDA 2MQKA 2PPXA 4X4BA 2LNMA 5DT2A 2BJCA 1OSLA 2ICPA 2A6CA 1ZZCA 3OQOA 3QOXA 5DTMA 4Z5CA 1E3OC 4FN3A 4PU8A 4WVLA 2PUEA 3G0TA 2GZUA 1ZZBA 1PRAA 3GZDC 1ZVVA 3F52A 2YBDA 4YG7B 2LYPA 1BDHA 4X4EA 4I6TA 1RZRD 2HINA 2XCJA 3NZLA 4J1WA 1QQBA 2PXDA 3MLFA 4OB4A 1CJGA 1RPEL 1NEQA 2PUBA 2ODRD 1LMB3 4EKGA 4X4DA 3F6WA 2AXZA 1HF0A 3QOWA 3CLCA 1L1MA 3TRBA 3ZHIA 1QP4A 1LCDA 4ER7A 3CECA 2O38A 2IVQA 2VEOA 2MEZA 1DW9A 1Y7YA 3BS3A 3OQMA 1HQ1A 4Z59A 2FJRA 2KPJA 1ZZ8A 3SCGA 2AUWA 3QF3A 2LYRA 2AWIA 3PE5A 2LYSA 2J7UA 4I6UA 3TEPA 2GRMA 2HSGA 3SR4A 3R09A 1NW3A 2IV1A 2IU7A 3KL4A 3GUUA 3D1NI 2JCGA 2PUFA 1UTXA 2LYLA 2PE5A 2L1PA 1JH9A 2PUAA 3H5TA 1R63A 3PXPA 2R1JL 1X57A 2BNMA 2ICTA 4NDWA 1WH6A 4I6RA 3LFPA 2L49A 4DE9A 2KZ8A 1QP7A 2AXVA 2AXUA 2PXFA 2IVBA 3LQXA 1SQ8A 1PNRA 1EFAA 3GBFA 2KEIA 1QQAA 2PIJA 3OKZA 2O49A 1Y9QA 2LLVA 3CROL 3DNVB 2V3CC 3VWSA 2BNOA 3LISA 2PXKA 4MCTA 3G5GA 2AW6A 2IVGA 1ZZ9A 2WIUB 4ER0A 1POUA 1ZS4A 3JXBC 2WUSR 4F8DA 4EZIA 1QP0A 2OR1L 3B7HA 4JCXA 2PXEA 4IA8A 3F51A 1AU7A 3JXDL 3M9LA 3IVPA 1BDIA 5K98B 1ZAYA 4Z5HA 2PUCA 4PU7A 2IUOA 2PXPA 1UXCA 3ZHMA 2HCSA 2BNNA 2L8NA 3KXAA 1JFSA 1XWRA
chains in the Genus database with same CATH topology
2PXUA 2PXQA 3DM5A 2PXFA 1MFQC 1DULA 3KL4A 3LQXA 1HQ1A 2FFHA 5GAHi 1QB2A 2JQEA 5GAGi 2PXBA 2PXPA 2PXVA 3NDBB 2PXLA 2PXTA 2V3CC 2PXDA 2PXKA 2XXAA 2PXEA 1QZXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXU A;  2PXQ A;  3DM5 A;  2PXF A;  1MFQ C;  1DUL A;  3KL4 A;  3LQX A;  1HQ1 A;  2FFH A;  5GAH i;  1QB2 A;  2JQE A;  5GAG i;  2PXB A;  2PXP A;  2PXV A;  3NDB B;  2PXL A;  2PXT A;  2V3C C;  2PXD A;  2PXK A;  2XXA A;  2PXE A;  1QZX A; 
#chains in the Genus database with same CATH topology
 3QFI A;  3A9Z A;  1WIZ A;  4JCY A;  4GHJ A;  2KEJ A;  4IVZ A;  5GAH i;  4DE8 A;  3TFL A;  4IWR A;  4PU4 C;  1DWK A;  5GAG i;  2GRL A;  2XXQ A;  2PXL A;  1WET A;  2XJ3 A;  3ZKC A;  2XSD C;  3O9X A;  2PXQ A;  1U2Z A;  5DRT A;  3SCF A;  1ZUG A;  3NRO A;  2HCN A;  3NXH A;  5A7L A;  3ME5 A;  2MXD A;  2XXP A;  1LCC A;  4EKI A;  1B0N A;  2PXT A;  3GZC A;  3DM5 A;  1ZZ7 A;  5DRY A;  2R63 A;  1R69 A;  1PRU A;  2FFH A;  3OQN A;  4Y42 A;  3FMY A;  1RZR A;  4YG1 A;  3R1F A;  1QZX A;  3UWP A;  1JFT A;  2OFY A;  1PER L;  4OBM A;  2EF8 A;  4X4G A;  3GN5 B;  3ZPX A;  3QYX A;  1RIO A;  3OP9 A;  4YAR A;  2EBY A;  4YG4 A;  4I8T A;  4X4F A;  1S7E A;  4X4C A;  1LLI A;  2J7W A;  4PU3 C;  4X4I A;  2JVL A;  1PRV A;  3QQ6 A;  4EQZ A;  2CSF A;  2LLW A;  4X4H A;  2XI8 A;  4HRA A;  1CQT A;  3BDN A;  3FYM A;  2M4H A;  2PXB A;  3HZI B;  3A9Y A;  4Z5D A;  4JQD A;  3NDB B;  3EUS A;  3L1P A;  2B5A A;  3UFD A;  5DTR A;  2XXA A;  2LYQ A;  2XIU A;  3OWQ A;  3KJX A;  3S8Q A;  1X2L A;  1DUL A;  4Z58 A;  3A9X A;  4ER5 A;  4ER6 A;  1QB2 A;  3MEJ A;  1QPZ A;  1WH8 A;  1GT0 C;  4J1X A;  1ZPQ A;  2O4A A;  1JWL A;  3GZD A;  1LQC A;  1OCT C;  5DSX A;  3GN5 A;  1MFQ C;  3JXC L;  3OMT A;  3SX0 A;  5JUW A;  2PXV A;  1YSE A;  1O4X A;  4GQM A;  4O8B A;  2EWT A;  2LYK A;  3SCH A;  1VPW A;  2PXU A;  3U3W A;  2KEK A;  1RZS A;  2CRO A;  4FBI A;  1NER A;  2D5V A;  2PUD A;  1ADR A;  3KZ3 A;  3RZZ A;  2JQE A;  4Q2J A;  4EK9 A;  2LCV A;  2HFZ A;  4MCX A;  3TEL A;  4YBA A;  2PUG A;  5DTQ A;  1ZZ6 A;  3G7D A;  3FYA A;  3BD1 A;  2LYJ A;  3QWG A;  1IC8 A;  2H8R A;  3VK0 A;  4ER3 A;  1UXD A;  2MQK A;  2PPX A;  4X4B A;  2LNM A;  5DT2 A;  2BJC A;  1OSL A;  2ICP A;  2A6C A;  1ZZC A;  3OQO A;  3QOX A;  5DTM A;  4Z5C A;  1E3O C;  4FN3 A;  4PU8 A;  4WVL A;  2PUE A;  3G0T A;  2GZU A;  1ZZB A;  1PRA A;  3GZD C;  1ZVV A;  3F52 A;  2YBD A;  4YG7 B;  2LYP A;  1BDH A;  4X4E A;  4I6T A;  1RZR D;  2HIN A;  2XCJ A;  3NZL A;  4J1W A;  1QQB A;  2PXD A;  3MLF A;  4OB4 A;  1CJG A;  1RPE L;  1NEQ A;  2PUB A;  2ODR D;  1LMB 3;  4EKG A;  4X4D A;  3F6W A;  2AXZ A;  1HF0 A;  3QOW A;  3CLC A;  1L1M A;  3TRB A;  3ZHI A;  1QP4 A;  1LCD A;  4ER7 A;  3CEC A;  2O38 A;  2IVQ A;  2VEO A;  2MEZ A;  1DW9 A;  1Y7Y A;  3BS3 A;  3OQM A;  1HQ1 A;  4Z59 A;  2FJR A;  2KPJ A;  1ZZ8 A;  3SCG A;  2AUW A;  3QF3 A;  2LYR A;  2AWI A;  3PE5 A;  2LYS A;  2J7U A;  4I6U A;  3TEP A;  2GRM A;  2HSG A;  3SR4 A;  3R09 A;  1NW3 A;  2IV1 A;  2IU7 A;  3KL4 A;  3GUU A;  3D1N I;  2JCG A;  2PUF A;  1UTX A;  2LYL A;  2PE5 A;  2L1P A;  1JH9 A;  2PUA A;  3H5T A;  1R63 A;  3PXP A;  2R1J L;  1X57 A;  2BNM A;  2ICT A;  4NDW A;  1WH6 A;  4I6R A;  3LFP A;  2L49 A;  4DE9 A;  2KZ8 A;  1QP7 A;  2AXV A;  2AXU A;  2PXF A;  2IVB A;  3LQX A;  1SQ8 A;  1PNR A;  1EFA A;  3GBF A;  2KEI A;  1QQA A;  2PIJ A;  3OKZ A;  2O49 A;  1Y9Q A;  2LLV A;  3CRO L;  3DNV B;  2V3C C;  3VWS A;  2BNO A;  3LIS A;  2PXK A;  4MCT A;  3G5G A;  2AW6 A;  2IVG A;  1ZZ9 A;  2WIU B;  4ER0 A;  1POU A;  1ZS4 A;  3JXB C;  2WUS R;  4F8D A;  4EZI A;  1QP0 A;  2OR1 L;  3B7H A;  4JCX A;  2PXE A;  4IA8 A;  3F51 A;  1AU7 A;  3JXD L;  3M9L A;  3IVP A;  1BDI A;  5K98 B;  1ZAY A;  4Z5H A;  2PUC A;  4PU7 A;  2IUO A;  2PXP A;  1UXC A;  3ZHM A;  2HCS A;  2BNN A;  2L8N A;  3KXA A;  1JFS A;  1XWR A; 
#chains in the Genus database with same CATH homology
 2PXU A;  2PXQ A;  3DM5 A;  2PXF A;  1MFQ C;  1DUL A;  3KL4 A;  3LQX A;  1HQ1 A;  2FFH A;  5GAH i;  1QB2 A;  2JQE A;  5GAG i;  2PXB A;  2PXP A;  2PXV A;  3NDB B;  2PXL A;  2PXT A;  2V3C C;  2PXD A;  2PXK A;  2XXA A;  2PXE A;  1QZX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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