2PXVA

Variant 6 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 15
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxvA00
2PXDA 2PXLA 2PXVA 2V3CC 1DULA 2PXPA 2PXQA 2JQEA 3LQXA 3KL4A 1QB2A 5GAHi 3NDBB 2PXFA 1MFQC 2PXKA 2PXTA 2FFHA 2XXAA 2PXUA 3DM5A 1QZXA 5GAGi 2PXEA 1HQ1A 2PXBA
chains in the Genus database with same CATH superfamily
3GZCA 2XIUA 4X4IA 4PU3C 2O38A 3SCHA 4Z58A 1ZZ6A 2JCGA 1VPWA 5GAHi 3ZHIA 5DRYA 2XSDC 3JXDL 1ZZ8A 5JUWA 1Y7YA 2KZ8A 3OQNA 2IVBA 2MXDA 4ER7A 1PRUA 4YG7B 1UXCA 4X4BA 1CJGA 1PRVA 4DE9A 4Z5DA 3ME5A 4J1WA 1PNRA 2PXFA 1R69A 3LISA 2AXZA 2CSFA 5DTMA 2KEJA 1NEQA 4I8TA 2JVLA 3U3WA 1LCDA 2D5VA 1ZZCA 2PXLA 2IVQA 2H8RA 3G0TA 4HRAA 1UXDA 2EF8A 3OP9A 3LQXA 4X4GA 2PXTA 2M4HA 2IVGA 2XCJA 3CLCA 3TELA 1AU7A 2PXEA 2O49A 4I6UA 2HINA 1B0NA 1WH6A 2WUSR 1DULA 2ODRD 4GQMA 4JCXA 2B5AA 2AXUA 2JQEA 5DT2A 3FMYA 3BDNA 2XXAA 3DNVB 1ZUGA 1CQTA 3GUUA 1SQ8A 3F6WA 1OSLA 3GZDC 3FYMA 4GHJA 4PU8A 2XI8A 1ZZ7A 2LCVA 1JFTA 3SR4A 3R1FA 2OFYA 1EFAA 2R63A 1U2ZA 3SCGA 3TEPA 1L1MA 4F8DA 2PXBA 1NW3A 2IV1A 3A9YA 3CECA 2LYKA 4X4CA 1ZPQA 1S7EA 3QF3A 2BNMA 4YBAA 2GRMA 2J7UA 3QWGA 2PIJA 3HZIB 2OR1L 2KPJA 3LFPA 3OWQA 2PUCA 5DTRA 2PXUA 1QQAA 3ZHMA 4EQZA 1QQBA 2LLVA 1WH8A 3B7HA 2LYJA 4X4HA 4Z5HA 2L1PA 3H5TA 1X2LA 3OKZA 2PXPA 1RIOA 3KL4A 2ICTA 1LQCA 1MFQC 3TRBA 5K98B 2PUGA 2PPXA 2HFZA 4YARA 3OQMA 2PUEA 2R1JL 1DW9A 2A6CA 2ICPA 3NDBB 3QYXA 2PE5A 3GZDA 5A7LA 4EKGA 1LLIA 2IUOA 4PU7A 1RZRA 3BS3A 5DRTA 3L1PA 2EWTA 1ZS4A 3SX0A 1Y9QA 3GN5B 4Q2JA 2MEZA 3O9XA 3RZZA 3NZLA 2GZUA 1HQ1A 4EKIA 3A9XA 2PXDA 1ADRA 1IC8A 2LNMA 1PRAA 1LMB3 3ZKCA 2PUDA 1DWKA 2J7WA 1PERL 1R63A 1YSEA 3G7DA 2PXKA 2LYQA 1X57A 1QPZA 3DM5A 3MLFA 3GBFA 2FJRA 4X4DA 2PXVA 3JXBC 2O4AA 3G5GA 5DTQA 4I6TA 4OB4A 3M9LA 1RZRD 2FFHA 2KEIA 3GN5A 1JFSA 4X4EA 4Y42A 3KZ3A 4JCYA 2XJ3A 2XXPA 4FBIA 4Z5CA 3UFDA 1JH9A 1WIZA 2L8NA 1UTXA 4EZIA 2AUWA 1ZAYA 4MCTA 3D1NI 4ER0A 2EBYA 4ER6A 2AW6A 1RZSA 5GAGi 3QOXA 3R09A 1E3OC 2PUBA 3QFIA 2CROA 3CROL 1QP4A 4FN3A 2HSGA 2V3CC 3SCFA 4NDWA 1NERA 1WETA 2VEOA 1ZZ9A 1HF0A 1QP7A 2LLWA 2PUFA 2AXVA 4PU4C 2GRLA 4JQDA 2WIUB 2BNNA 3VWSA 2LYSA 4DE8A 4IWRA 4YG1A 3NROA 4IA8A 2KEKA 2MQKA 4Z59A 2LYPA 1ZZBA 3NXHA 1XWRA 1QP0A 3KXAA 3OMTA 4OBMA 2IU7A 3OQOA 2XXQA 3JXCL 3F51A 1ZVVA 1O4XA 3BD1A 2BJCA 3IVPA 2BNOA 3QOWA 3ZPXA 1BDHA 3MEJA 2HCNA 4EK9A 3QQ6A 4I6RA 4MCXA 1OCTC 2PUAA 3A9ZA 3FYAA 1BDIA 4WVLA 4O8BA 2LYRA 4J1XA 1GT0C 1JWLA 2YBDA 4YG4A 1LCCA 2AWIA 4X4FA 3F52A 4ER3A 4IVZA 2PXQA 1POUA 3UWPA 2L49A 1QB2A 3S8QA 3KJXA 5DSXA 2HCSA 3EUSA 1RPEL 4ER5A 3PXPA 3TFLA 3PE5A 1QZXA 3VK0A 2LYLA
chains in the Genus database with same CATH topology
2PXDA 2PXLA 2PXVA 2V3CC 1DULA 2PXPA 2PXQA 2JQEA 3LQXA 3KL4A 1QB2A 5GAHi 3NDBB 2PXFA 1MFQC 2PXKA 2PXTA 2FFHA 2XXAA 2PXUA 3DM5A 1QZXA 5GAGi 2PXEA 1HQ1A 2PXBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXD A;  2PXL A;  2PXV A;  2V3C C;  1DUL A;  2PXP A;  2PXQ A;  2JQE A;  3LQX A;  3KL4 A;  1QB2 A;  5GAH i;  3NDB B;  2PXF A;  1MFQ C;  2PXK A;  2PXT A;  2FFH A;  2XXA A;  2PXU A;  3DM5 A;  1QZX A;  5GAG i;  2PXE A;  1HQ1 A;  2PXB A; 
#chains in the Genus database with same CATH topology
 3GZC A;  2XIU A;  4X4I A;  4PU3 C;  2O38 A;  3SCH A;  4Z58 A;  1ZZ6 A;  2JCG A;  1VPW A;  5GAH i;  3ZHI A;  5DRY A;  2XSD C;  3JXD L;  1ZZ8 A;  5JUW A;  1Y7Y A;  2KZ8 A;  3OQN A;  2IVB A;  2MXD A;  4ER7 A;  1PRU A;  4YG7 B;  1UXC A;  4X4B A;  1CJG A;  1PRV A;  4DE9 A;  4Z5D A;  3ME5 A;  4J1W A;  1PNR A;  2PXF A;  1R69 A;  3LIS A;  2AXZ A;  2CSF A;  5DTM A;  2KEJ A;  1NEQ A;  4I8T A;  2JVL A;  3U3W A;  1LCD A;  2D5V A;  1ZZC A;  2PXL A;  2IVQ A;  2H8R A;  3G0T A;  4HRA A;  1UXD A;  2EF8 A;  3OP9 A;  3LQX A;  4X4G A;  2PXT A;  2M4H A;  2IVG A;  2XCJ A;  3CLC A;  3TEL A;  1AU7 A;  2PXE A;  2O49 A;  4I6U A;  2HIN A;  1B0N A;  1WH6 A;  2WUS R;  1DUL A;  2ODR D;  4GQM A;  4JCX A;  2B5A A;  2AXU A;  2JQE A;  5DT2 A;  3FMY A;  3BDN A;  2XXA A;  3DNV B;  1ZUG A;  1CQT A;  3GUU A;  1SQ8 A;  3F6W A;  1OSL A;  3GZD C;  3FYM A;  4GHJ A;  4PU8 A;  2XI8 A;  1ZZ7 A;  2LCV A;  1JFT A;  3SR4 A;  3R1F A;  2OFY A;  1EFA A;  2R63 A;  1U2Z A;  3SCG A;  3TEP A;  1L1M A;  4F8D A;  2PXB A;  1NW3 A;  2IV1 A;  3A9Y A;  3CEC A;  2LYK A;  4X4C A;  1ZPQ A;  1S7E A;  3QF3 A;  2BNM A;  4YBA A;  2GRM A;  2J7U A;  3QWG A;  2PIJ A;  3HZI B;  2OR1 L;  2KPJ A;  3LFP A;  3OWQ A;  2PUC A;  5DTR A;  2PXU A;  1QQA A;  3ZHM A;  4EQZ A;  1QQB A;  2LLV A;  1WH8 A;  3B7H A;  2LYJ A;  4X4H A;  4Z5H A;  2L1P A;  3H5T A;  1X2L A;  3OKZ A;  2PXP A;  1RIO A;  3KL4 A;  2ICT A;  1LQC A;  1MFQ C;  3TRB A;  5K98 B;  2PUG A;  2PPX A;  2HFZ A;  4YAR A;  3OQM A;  2PUE A;  2R1J L;  1DW9 A;  2A6C A;  2ICP A;  3NDB B;  3QYX A;  2PE5 A;  3GZD A;  5A7L A;  4EKG A;  1LLI A;  2IUO A;  4PU7 A;  1RZR A;  3BS3 A;  5DRT A;  3L1P A;  2EWT A;  1ZS4 A;  3SX0 A;  1Y9Q A;  3GN5 B;  4Q2J A;  2MEZ A;  3O9X A;  3RZZ A;  3NZL A;  2GZU A;  1HQ1 A;  4EKI A;  3A9X A;  2PXD A;  1ADR A;  1IC8 A;  2LNM A;  1PRA A;  1LMB 3;  3ZKC A;  2PUD A;  1DWK A;  2J7W A;  1PER L;  1R63 A;  1YSE A;  3G7D A;  2PXK A;  2LYQ A;  1X57 A;  1QPZ A;  3DM5 A;  3MLF A;  3GBF A;  2FJR A;  4X4D A;  2PXV A;  3JXB C;  2O4A A;  3G5G A;  5DTQ A;  4I6T A;  4OB4 A;  3M9L A;  1RZR D;  2FFH A;  2KEI A;  3GN5 A;  1JFS A;  4X4E A;  4Y42 A;  3KZ3 A;  4JCY A;  2XJ3 A;  2XXP A;  4FBI A;  4Z5C A;  3UFD A;  1JH9 A;  1WIZ A;  2L8N A;  1UTX A;  4EZI A;  2AUW A;  1ZAY A;  4MCT A;  3D1N I;  4ER0 A;  2EBY A;  4ER6 A;  2AW6 A;  1RZS A;  5GAG i;  3QOX A;  3R09 A;  1E3O C;  2PUB A;  3QFI A;  2CRO A;  3CRO L;  1QP4 A;  4FN3 A;  2HSG A;  2V3C C;  3SCF A;  4NDW A;  1NER A;  1WET A;  2VEO A;  1ZZ9 A;  1HF0 A;  1QP7 A;  2LLW A;  2PUF A;  2AXV A;  4PU4 C;  2GRL A;  4JQD A;  2WIU B;  2BNN A;  3VWS A;  2LYS A;  4DE8 A;  4IWR A;  4YG1 A;  3NRO A;  4IA8 A;  2KEK A;  2MQK A;  4Z59 A;  2LYP A;  1ZZB A;  3NXH A;  1XWR A;  1QP0 A;  3KXA A;  3OMT A;  4OBM A;  2IU7 A;  3OQO A;  2XXQ A;  3JXC L;  3F51 A;  1ZVV A;  1O4X A;  3BD1 A;  2BJC A;  3IVP A;  2BNO A;  3QOW A;  3ZPX A;  1BDH A;  3MEJ A;  2HCN A;  4EK9 A;  3QQ6 A;  4I6R A;  4MCX A;  1OCT C;  2PUA A;  3A9Z A;  3FYA A;  1BDI A;  4WVL A;  4O8B A;  2LYR A;  4J1X A;  1GT0 C;  1JWL A;  2YBD A;  4YG4 A;  1LCC A;  2AWI A;  4X4F A;  3F52 A;  4ER3 A;  4IVZ A;  2PXQ A;  1POU A;  3UWP A;  2L49 A;  1QB2 A;  3S8Q A;  3KJX A;  5DSX A;  2HCS A;  3EUS A;  1RPE L;  4ER5 A;  3PXP A;  3TFL A;  3PE5 A;  1QZX A;  3VK0 A;  2LYL A; 
#chains in the Genus database with same CATH homology
 2PXD A;  2PXL A;  2PXV A;  2V3C C;  1DUL A;  2PXP A;  2PXQ A;  2JQE A;  3LQX A;  3KL4 A;  1QB2 A;  5GAH i;  3NDB B;  2PXF A;  1MFQ C;  2PXK A;  2PXT A;  2FFH A;  2XXA A;  2PXU A;  3DM5 A;  1QZX A;  5GAG i;  2PXE A;  1HQ1 A;  2PXB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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