2Q9IB

Crystal structure of d-dimer from human fibrin complexed with met-his-arg-pro-tyr-amide.
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
303
structure length
303
Chain Sequence
VNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIRPFFP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords Fibrinogen alpha chain
publication title Probing the beta-chain hole of fibrinogen with synthetic peptides that differ at their amino termini
pubmed doi rcsb
total genus 90
structure length 303
sequence length 303
chains with identical sequence E
ec nomenclature
pdb deposition date 2007-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2q9iB01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2q9iB02
1FZFC 2XNXB 2J60A 1FZCC 4JYOX 3BVHB 2FFDC 1LWUC 2HPCB 2HLOB 2Z4EB 1LWUB 2J3UA 2Q9IB 2HODB 2OYHC 2J64A 2J0GA 1RF0B 1N86C 3E1IB 1FICA 2JHHC 1RE3B 2H43C 1FZFB 3H32C 4R9JA 3FIBA 2H43B 1Z3SA 1FIDA 1FZGC 2OYIC 2J3OA 2J5ZA 1FZCB 2FFDB 1RF1C 3GHGC 1FZDA 3HUSC 1FZAC 2OYHB 1LT9C 2FIBA 1Z3UA 2J2PA 1N86B 4M7HA 2J61A 2J0YA 2D39A 1FZEC 4ZFGA 2J0HA 2JHKF 4EPUA 3H32B 2J1GA 4M7FA 1FZGB 4JZCA 1M1JC 2OYIB 1RE4C 2JHMF 1LTJC 2J61B 1RF1B 4NYTA 2XNXC 3HUSB 4R9TA 1FZAB 1LT9B 2J3FA 1JC9A 2JHIF 2JHLF 3BVHC 2J3GA 1N73C 2HPCC 1FZEB 1FZBC 2HLOC 1N73B 2Z4EC 1FZBB 2Q9IC 2HODC 1RF0C 3E1IC 1M1JB 2J3FD 1RE4B 1LTJB 1FIBA 2WNPF 1RE3C 2GY7A
chains in the Genus database with same CATH superfamily
1FZFC 2XNXB 2J60A 1FZCC 4JYOX 3BVHB 2FFDC 1LWUC 2HPCB 2HLOB 2Z4EB 1LWUB 2J3UA 2Q9IB 2HODB 2OYHC 2J64A 2J0GA 1RF0B 1N86C 3E1IB 1FICA 2JHHC 1RE3B 2H43C 1FZFB 3H32C 4R9JA 3FIBA 2H43B 1Z3SA 1FIDA 1FZGC 2OYIC 2J3OA 2J5ZA 1FZCB 2FFDB 1RF1C 3GHGC 1FZDA 3HUSC 1FZAC 2OYHB 1LT9C 2FIBA 1Z3UA 2J2PA 1N86B 4M7HA 2J61A 2J0YA 2D39A 1FZEC 4ZFGA 2J0HA 2JHKF 4EPUA 3H32B 2J1GA 4M7FA 1FZGB 4JZCA 1M1JC 2OYIB 1RE4C 2JHMF 1LTJC 2J61B 1RF1B 3GHGB 4NYTA 2XNXC 3HUSB 4R9TA 1FZAB 1LT9B 2J3FA 1JC9A 2JHIF 2JHLF 3BVHC 2J3GA 1N73C 2HPCC 1FZEB 1FZBC 2HLOC 1N73B 2Z4EC 1FZBB 2Q9IC 2HODC 1RF0C 3E1IC 1M1JB 2J3FD 1RE4B 1LTJB 1FIBA 2WNPF 1RE3C 2GY7A
chains in the Genus database with same CATH topology
1FZFC 2XNXB 2J60A 1FZCC 4JYOX 3BVHB 2FFDC 1LWUC 2HPCB 2HLOB 2Z4EB 1LWUB 2J3UA 2Q9IB 2HODB 2OYHC 2J64A 2J0GA 1RF0B 1N86C 3E1IB 1FICA 2JHHC 1RE3B 2H43C 1FZFB 3H32C 4R9JA 3FIBA 2H43B 1Z3SA 1FIDA 1FZGC 2OYIC 2J3OA 2J5ZA 1FZCB 2FFDB 1RF1C 3GHGC 1FZDA 3HUSC 1FZAC 2OYHB 1LT9C 2FIBA 1Z3UA 2J2PA 1N86B 4M7HA 2J61A 2J0YA 2D39A 1FZEC 4ZFGA 2J0HA 2JHKF 4EPUA 3H32B 2J1GA 4M7FA 1FZGB 4JZCA 1M1JC 2OYIB 1RE4C 2JHMF 1LTJC 2J61B 1RF1B 4NYTA 2XNXC 3HUSB 4R9TA 1FZAB 1LT9B 2J3FA 1JC9A 2JHIF 2JHLF 3BVHC 2J3GA 1N73C 2HPCC 1FZEB 1FZBC 2HLOC 1N73B 2Z4EC 1FZBB 2Q9IC 2HODC 1RF0C 3E1IC 1M1JB 2J3FD 1RE4B 1LTJB 1FIBA 2WNPF 1RE3C 2GY7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZF C;  2XNX B;  2J60 A;  1FZC C;  4JYO X;  3BVH B;  2FFD C;  1LWU C;  2HPC B;  2HLO B;  2Z4E B;  1LWU B;  2J3U A;  2Q9I B;  2HOD B;  2OYH C;  2J64 A;  2J0G A;  1RF0 B;  1N86 C;  3E1I B;  1FIC A;  2JHH C;  1RE3 B;  2H43 C;  1FZF B;  3H32 C;  4R9J A;  3FIB A;  2H43 B;  1Z3S A;  1FID A;  1FZG C;  2OYI C;  2J3O A;  2J5Z A;  1FZC B;  2FFD B;  1RF1 C;  3GHG C;  1FZD A;  3HUS C;  1FZA C;  2OYH B;  1LT9 C;  2FIB A;  1Z3U A;  2J2P A;  1N86 B;  4M7H A;  2J61 A;  2J0Y A;  2D39 A;  1FZE C;  4ZFG A;  2J0H A;  2JHK F;  4EPU A;  3H32 B;  2J1G A;  4M7F A;  1FZG B;  4JZC A;  1M1J C;  2OYI B;  1RE4 C;  2JHM F;  1LTJ C;  2J61 B;  1RF1 B;  4NYT A;  2XNX C;  3HUS B;  4R9T A;  1FZA B;  1LT9 B;  2J3F A;  1JC9 A;  2JHI F;  2JHL F;  3BVH C;  2J3G A;  1N73 C;  2HPC C;  1FZE B;  1FZB C;  2HLO C;  1N73 B;  2Z4E C;  1FZB B;  2Q9I C;  2HOD C;  1RF0 C;  3E1I C;  1M1J B;  2J3F D;  1RE4 B;  1LTJ B;  1FIB A;  2WNP F;  1RE3 C;  2GY7 A; 
#chains in the Genus database with same CATH topology
 1FZF C;  2XNX B;  2J60 A;  1FZC C;  4JYO X;  3BVH B;  2FFD C;  1LWU C;  2HPC B;  2HLO B;  2Z4E B;  1LWU B;  2J3U A;  2Q9I B;  2HOD B;  2OYH C;  2J64 A;  2J0G A;  1RF0 B;  1N86 C;  3E1I B;  1FIC A;  2JHH C;  1RE3 B;  2H43 C;  1FZF B;  3H32 C;  4R9J A;  3FIB A;  2H43 B;  1Z3S A;  1FID A;  1FZG C;  2OYI C;  2J3O A;  2J5Z A;  1FZC B;  2FFD B;  1RF1 C;  3GHG C;  1FZD A;  3HUS C;  1FZA C;  2OYH B;  1LT9 C;  2FIB A;  1Z3U A;  2J2P A;  1N86 B;  4M7H A;  2J61 A;  2J0Y A;  2D39 A;  1FZE C;  4ZFG A;  2J0H A;  2JHK F;  4EPU A;  3H32 B;  2J1G A;  4M7F A;  1FZG B;  4JZC A;  1M1J C;  2OYI B;  1RE4 C;  2JHM F;  1LTJ C;  2J61 B;  1RF1 B;  3GHG B;  4NYT A;  2XNX C;  3HUS B;  4R9T A;  1FZA B;  1LT9 B;  2J3F A;  1JC9 A;  2JHI F;  2JHL F;  3BVH C;  2J3G A;  1N73 C;  2HPC C;  1FZE B;  1FZB C;  2HLO C;  1N73 B;  2Z4E C;  1FZB B;  2Q9I C;  2HOD C;  1RF0 C;  3E1I C;  1M1J B;  2J3F D;  1RE4 B;  1LTJ B;  1FIB A;  2WNP F;  1RE3 C;  2GY7 A; 
#chains in the Genus database with same CATH homology
 1FZF C;  2XNX B;  2J60 A;  1FZC C;  4JYO X;  3BVH B;  2FFD C;  1LWU C;  2HPC B;  2HLO B;  2Z4E B;  1LWU B;  2J3U A;  2Q9I B;  2HOD B;  2OYH C;  2J64 A;  2J0G A;  1RF0 B;  1N86 C;  3E1I B;  1FIC A;  2JHH C;  1RE3 B;  2H43 C;  1FZF B;  3H32 C;  4R9J A;  3FIB A;  2H43 B;  1Z3S A;  1FID A;  1FZG C;  2OYI C;  2J3O A;  2J5Z A;  1FZC B;  2FFD B;  1RF1 C;  3GHG C;  1FZD A;  3HUS C;  1FZA C;  2OYH B;  1LT9 C;  2FIB A;  1Z3U A;  2J2P A;  1N86 B;  4M7H A;  2J61 A;  2J0Y A;  2D39 A;  1FZE C;  4ZFG A;  2J0H A;  2JHK F;  4EPU A;  3H32 B;  2J1G A;  4M7F A;  1FZG B;  4JZC A;  1M1J C;  2OYI B;  1RE4 C;  2JHM F;  1LTJ C;  2J61 B;  1RF1 B;  4NYT A;  2XNX C;  3HUS B;  4R9T A;  1FZA B;  1LT9 B;  2J3F A;  1JC9 A;  2JHI F;  2JHL F;  3BVH C;  2J3G A;  1N73 C;  2HPC C;  1FZE B;  1FZB C;  2HLO C;  1N73 B;  2Z4E C;  1FZB B;  2Q9I C;  2HOD C;  1RF0 C;  3E1I C;  1M1J B;  2J3F D;  1RE4 B;  1LTJ B;  1FIB A;  2WNP F;  1RE3 C;  2GY7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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