2R93F

Elongation complex of rna polymerase ii with a hepatitis delta virus-derived rna stem loop
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
88
structure length
88
Chain Sequence
TLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/rna
molecule keywords RNA (5'-R(*UP*GP*AP*UP*UP*CP*UP*CP*UP*AP*UP*CP*GP*GP*AP*AP*U
publication title Molecular basis of RNA-dependent RNA polymerase II activity.
pubmed doi rcsb
total genus 23
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 2r93F00
2E2IF 5C4XF 4G7HE 3S2HF 4C3IF 3HKZK 5M5WF 1ZYRE 3GTMF 1TWCF 4X6AF 3PO3F 3GTGF 1WCMF 1YNJK 2R92F 4BY1F 4KMUE 3CQZF 4Y7NF 4G7ZE 4YFXE 1SFOF 3HOZF 2CW0E 3GTOF 4A3IF 1TWGF 4A3CF 3S14F 4A3KF 4YG2E 2JA8F 5IPLE 4LJZE 2PMZK 3H3VG 5D4DE 3S2DF 5IYBF 1IW7E 4BBRF 3GTKF 3H0GF 4OIQE 2NVXF 5FLMF 4GZYE 4YFKE 3GTQF 2NVYF 3S16F 5M3FF 2NVQF 3RZOF 5D4EE 4A3BF 4ZH4E 4MQ9E 4BXXF 1TWHF 4AYBK 4MEXE 2JA7F 2VUMF 5M5YF 3S1QF 2R93F 1I6VE 1R9TF 4LK1E 2A68E 1K83F 4KN4E 2B63F 4Q4ZE 2JA6F 2E2JF 1TWFF 4XSZE 4C3JF 4A3FF 2WAQK 2A69E 2BE5E 5E18E 3S1MF 1I50F 4YFNE 2PPBE 4MEYE 3DXJE 4BY7F 4A93F 2O5IE 2YU9F 1YNNK 2A6EE 4XLNE 4LLGE 2Y0SI 2E2HF 4OINE 5D4CE 3S17F 4XSXE 2JA5F 2R7ZF 3S1RF 1HQME 5M3MF 4Q5SE 3HOYF 4A3MF 4A3JF 3GTLF 5C44F 3HOXF 4KN7E 3GTJF 3M4OF 3S1NF 4G7OE 2O5JE 2NVTF 4LK0E 5IP9F 3HOUF 3M3YF 3K7AF 1QKLA 3PO2F 5M5XF 3HOWF 5C3EF 5C4JF 5IYCF 4C3HF 3WODE 1TWAF 5TMFE 4OIPE 5FJ8F 4A3DF 1I6HF 5BYHE 1SMYE 1Y1VF 3FKIF 4A3EF 4A3LF 4Y52F 3EQLE 4OIOE 4XLPE 3GTPF 1Y1WF 3I4MF 1I3QF 2A6HE 4C2MF 4BBSF 3S15F 5TMCE 2WB1I 5E17E 3I4NF 4JK1E 5IYDF 5IP7F 4A3GF 3HOVF 3RZDF 4OIRE
chains in the Genus database with same CATH superfamily
2E2IF 5C4XF 4G7HE 4BY1E 3S2HF 2R92E 4C3IF 3CQZE 2WAQH 3HKZK 5M5WF 1ZYRE 3GTMF 1TWCF 1SFOE 3HOZE 3PO3F 2JA7E 1WCMF 1YNJK 3GTGF 2VUME 4A3IE 4X6AF 3S14E 4A3KE 4BY1F 2JA8E 2R92F 1EIKA 4KMUE 3CQZF 4Y7NF 4G7ZE 4YFXE 1SFOF 3S2DE 3HOZF 2CW0E 5IYBE 3GTOF 4A3IF 4C3JE 1TWGF 4A3CF 4BBRE 3GTKE 3S14F 4A3KF 4YG2E 2JA8F 5IPLE 3H0GE 4LJZE 2PMZK 3S1ME 3H3VG 5FLME 5D4DE 3S2DF 4BY7E 3GTQE 5IYBF 2NVYE 3RZOE 5M3FE 1IW7E 4BBRF 3GTKF 2KRXA 3H0GF 4OIQE 3S17E 3H3VF 2NVXF 4A3BE 5FLMF 4GZYE 4YFKE 3GTQF 4BXXE 2NVYF 1TWHE 5M3FF 2NVQF 3S16F 3RZOF 5M5YE 3S1QE 2R93E 5D4EE 1R9TE 4A3BF 1K83E 3S1NE 2B63E 2JA6E 4QIWK 4ZH4E 4MQ9E 1TWFE 2E2JE 4BXXF 1TWHF 4AYBK 3M3YE 4MEXE 2JA7F 3K7AE 2VUMF 5M5YF 3S1QF 2R93F 1I6VE 4A3FE 1R9TF 2PMZH 4LK1E 2A68E 1K83F 4KN4E 3M4OE 2B63F 4Q4ZE 2JA6F 1I50E 2E2JF 1TWFF 5IYCE 4A93E 4XSZE 4C3JF 2YU9E 2Y0SH 5FJ8E 4A3FF 2WAQK 1I6HE 2A69E 2BE5E 5E18E 3S1MF 1I50F 3HKZH 4YFNE 4A3EE 2JA5E 2R7ZE 2PPBE 4MEYE 3DXJE 4BY7F 4A93F 3S1RE 2O5IE 3GTPE 5M3ME 2YU9F 3HOYE 1YNNK 2A6EE 4A3ME 4A3JE 3I4ME 4XLNE 5C44E 4LLGE 2Y0SI 3GTJE 3HOXE 1DZFA 2WB1H 5D4CE 2E2HF 4OINE 3S17F 4XSXE 4QIWH 2JA5F 2R7ZF 2NVTE 3I4NE 4AYBH 5IP9E 3S1RF 1HQME 3HOUE 5M3MF 4Q5SE 3HOYF 5C4XE 4A3MF 3S2HE 4A3JF 3GTLF 5C44F 3HOXF 4KN7E 3GTJF 5M5WE 3M4OF 3PO2E 3GTME 3S1NF 4G7OE 2O5JE 5M5XE 3HOWE 2NVTF 5C3EE 5C4JE 4LK0E 5IP9F 3HOUF 3M3YF 3K7AF 4C3HE 1TWAE 1QKLA 4Y7NE 3PO2F 4A3DE 5M5XF 3HOWF 3GTOE 5C3EF 3FKIE 1Y1VE 5C4JF 4A3LE 4Y52E 1TWGE 5IYCF 4A3CE 4C3HF 3WODE 1TWAF 5TMFE 3GTLE 4OIPE 5FJ8F 1Y1WE 4A3DF 1I3QE 1I6HF 4C2ME 5BYHE 4BBSE 3S15E 1SMYE 1Y1VF 3FKIF 4A3EF 4A3LF 4Y52F 3EQLE 4OIOE 4XLPE 5IYDE 2E2HE 5IP7E 4A3GE 3HOVE 3RZDE 3GTPF 2E2IE 2NVXE 1Y1WF 3I4MF 1I3QF 2A6HE 4C2MF 4C3IE 4BBSF 3S15F 5TMCE 3S16E 1TWCE 2NVQE 2WB1I 3PO3E 3GTGE 1WCME 3I4NF 4JK1E 5IYDF 4X6AE 5IP7F 4A3GF 5E17E 3HOVF 3RZDF 4OIRE
chains in the Genus database with same CATH topology
2E2IF 5C4XF 4G7HE 3S2HF 4C3IF 3HKZK 5M5WF 1ZYRE 3GTMF 1TWCF 4X6AF 3PO3F 3GTGF 1WCMF 1YNJK 2R92F 4BY1F 4KMUE 3CQZF 4Y7NF 4G7ZE 4YFXE 1SFOF 3HOZF 2CW0E 3GTOF 4A3IF 1TWGF 4A3CF 3S14F 4A3KF 4YG2E 2JA8F 5IPLE 4LJZE 2PMZK 3H3VG 5D4DE 3S2DF 5IYBF 1IW7E 4BBRF 3GTKF 2KRXA 3H0GF 4OIQE 2NVXF 5FLMF 4GZYE 4YFKE 3GTQF 2NVYF 3S16F 5M3FF 2NVQF 3RZOF 5D4EE 4A3BF 4QIWK 4ZH4E 4MQ9E 4BXXF 1TWHF 4AYBK 4MEXE 2JA7F 2VUMF 5M5YF 3S1QF 2R93F 1I6VE 1R9TF 4LK1E 2A68E 1K83F 4KN4E 2B63F 4Q4ZE 2JA6F 2E2JF 1TWFF 4XSZE 4C3JF 4A3FF 2WAQK 2A69E 2BE5E 5E18E 3S1MF 1I50F 4YFNE 2PPBE 4MEYE 3DXJE 4BY7F 4A93F 2O5IE 2YU9F 1YNNK 2A6EE 4XLNE 4LLGE 2Y0SI 2E2HF 4OINE 5D4CE 3S17F 4XSXE 2JA5F 2R7ZF 3S1RF 1HQME 5M3MF 4Q5SE 3HOYF 4A3MF 4A3JF 3GTLF 5C44F 3HOXF 4KN7E 3GTJF 3M4OF 3S1NF 4G7OE 2O5JE 2NVTF 4LK0E 5IP9F 3HOUF 3M3YF 3K7AF 1QKLA 3PO2F 5M5XF 3HOWF 5C3EF 5C4JF 5IYCF 4C3HF 3WODE 1TWAF 5TMFE 4OIPE 5FJ8F 4A3DF 1I6HF 5BYHE 1SMYE 1Y1VF 3FKIF 4A3EF 4A3LF 4Y52F 3EQLE 4OIOE 4XLPE 3GTPF 1Y1WF 3I4MF 1I3QF 2A6HE 4C2MF 4BBSF 3S15F 5TMCE 2WB1I 5E17E 3I4NF 4JK1E 5IYDF 5IP7F 4A3GF 3HOVF 3RZDF 4OIRE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E2I F;  5C4X F;  4G7H E;  3S2H F;  4C3I F;  3HKZ K;  5M5W F;  1ZYR E;  3GTM F;  1TWC F;  4X6A F;  3PO3 F;  3GTG F;  1WCM F;  1YNJ K;  2R92 F;  4BY1 F;  4KMU E;  3CQZ F;  4Y7N F;  4G7Z E;  4YFX E;  1SFO F;  3HOZ F;  2CW0 E;  3GTO F;  4A3I F;  1TWG F;  4A3C F;  3S14 F;  4A3K F;  4YG2 E;  2JA8 F;  5IPL E;  4LJZ E;  2PMZ K;  3H3V G;  5D4D E;  3S2D F;  5IYB F;  1IW7 E;  4BBR F;  3GTK F;  3H0G F;  4OIQ E;  2NVX F;  5FLM F;  4GZY E;  4YFK E;  3GTQ F;  2NVY F;  3S16 F;  5M3F F;  2NVQ F;  3RZO F;  5D4E E;  4A3B F;  4ZH4 E;  4MQ9 E;  4BXX F;  1TWH F;  4AYB K;  4MEX E;  2JA7 F;  2VUM F;  5M5Y F;  3S1Q F;  2R93 F;  1I6V E;  1R9T F;  4LK1 E;  2A68 E;  1K83 F;  4KN4 E;  2B63 F;  4Q4Z E;  2JA6 F;  2E2J F;  1TWF F;  4XSZ E;  4C3J F;  4A3F F;  2WAQ K;  2A69 E;  2BE5 E;  5E18 E;  3S1M F;  1I50 F;  4YFN E;  2PPB E;  4MEY E;  3DXJ E;  4BY7 F;  4A93 F;  2O5I E;  2YU9 F;  1YNN K;  2A6E E;  4XLN E;  4LLG E;  2Y0S I;  2E2H F;  4OIN E;  5D4C E;  3S17 F;  4XSX E;  2JA5 F;  2R7Z F;  3S1R F;  1HQM E;  5M3M F;  4Q5S E;  3HOY F;  4A3M F;  4A3J F;  3GTL F;  5C44 F;  3HOX F;  4KN7 E;  3GTJ F;  3M4O F;  3S1N F;  4G7O E;  2O5J E;  2NVT F;  4LK0 E;  5IP9 F;  3HOU F;  3M3Y F;  3K7A F;  1QKL A;  3PO2 F;  5M5X F;  3HOW F;  5C3E F;  5C4J F;  5IYC F;  4C3H F;  3WOD E;  1TWA F;  5TMF E;  4OIP E;  5FJ8 F;  4A3D F;  1I6H F;  5BYH E;  1SMY E;  1Y1V F;  3FKI F;  4A3E F;  4A3L F;  4Y52 F;  3EQL E;  4OIO E;  4XLP E;  3GTP F;  1Y1W F;  3I4M F;  1I3Q F;  2A6H E;  4C2M F;  4BBS F;  3S15 F;  5TMC E;  2WB1 I;  5E17 E;  3I4N F;  4JK1 E;  5IYD F;  5IP7 F;  4A3G F;  3HOV F;  3RZD F;  4OIR E; 
#chains in the Genus database with same CATH topology
 2E2I F;  5C4X F;  4G7H E;  4BY1 E;  3S2H F;  2R92 E;  4C3I F;  3CQZ E;  2WAQ H;  3HKZ K;  5M5W F;  1ZYR E;  3GTM F;  1TWC F;  1SFO E;  3HOZ E;  3PO3 F;  2JA7 E;  1WCM F;  1YNJ K;  3GTG F;  2VUM E;  4A3I E;  4X6A F;  3S14 E;  4A3K E;  4BY1 F;  2JA8 E;  2R92 F;  1EIK A;  4KMU E;  3CQZ F;  4Y7N F;  4G7Z E;  4YFX E;  1SFO F;  3S2D E;  3HOZ F;  2CW0 E;  5IYB E;  3GTO F;  4A3I F;  4C3J E;  1TWG F;  4A3C F;  4BBR E;  3GTK E;  3S14 F;  4A3K F;  4YG2 E;  2JA8 F;  5IPL E;  3H0G E;  4LJZ E;  2PMZ K;  3S1M E;  3H3V G;  5FLM E;  5D4D E;  3S2D F;  4BY7 E;  3GTQ E;  5IYB F;  2NVY E;  3RZO E;  5M3F E;  1IW7 E;  4BBR F;  3GTK F;  2KRX A;  3H0G F;  4OIQ E;  3S17 E;  3H3V F;  2NVX F;  4A3B E;  5FLM F;  4GZY E;  4YFK E;  3GTQ F;  4BXX E;  2NVY F;  1TWH E;  5M3F F;  2NVQ F;  3S16 F;  3RZO F;  5M5Y E;  3S1Q E;  2R93 E;  5D4E E;  1R9T E;  4A3B F;  1K83 E;  3S1N E;  2B63 E;  2JA6 E;  4QIW K;  4ZH4 E;  4MQ9 E;  1TWF E;  2E2J E;  4BXX F;  1TWH F;  4AYB K;  3M3Y E;  4MEX E;  2JA7 F;  3K7A E;  2VUM F;  5M5Y F;  3S1Q F;  2R93 F;  1I6V E;  4A3F E;  1R9T F;  2PMZ H;  4LK1 E;  2A68 E;  1K83 F;  4KN4 E;  3M4O E;  2B63 F;  4Q4Z E;  2JA6 F;  1I50 E;  2E2J F;  1TWF F;  5IYC E;  4A93 E;  4XSZ E;  4C3J F;  2YU9 E;  2Y0S H;  5FJ8 E;  4A3F F;  2WAQ K;  1I6H E;  2A69 E;  2BE5 E;  5E18 E;  3S1M F;  1I50 F;  3HKZ H;  4YFN E;  4A3E E;  2JA5 E;  2R7Z E;  2PPB E;  4MEY E;  3DXJ E;  4BY7 F;  4A93 F;  3S1R E;  2O5I E;  3GTP E;  5M3M E;  2YU9 F;  3HOY E;  1YNN K;  2A6E E;  4A3M E;  4A3J E;  3I4M E;  4XLN E;  5C44 E;  4LLG E;  2Y0S I;  3GTJ E;  3HOX E;  1DZF A;  2WB1 H;  5D4C E;  2E2H F;  4OIN E;  3S17 F;  4XSX E;  4QIW H;  2JA5 F;  2R7Z F;  2NVT E;  3I4N E;  4AYB H;  5IP9 E;  3S1R F;  1HQM E;  3HOU E;  5M3M F;  4Q5S E;  3HOY F;  5C4X E;  4A3M F;  3S2H E;  4A3J F;  3GTL F;  5C44 F;  3HOX F;  4KN7 E;  3GTJ F;  5M5W E;  3M4O F;  3PO2 E;  3GTM E;  3S1N F;  4G7O E;  2O5J E;  5M5X E;  3HOW E;  2NVT F;  5C3E E;  5C4J E;  4LK0 E;  5IP9 F;  3HOU F;  3M3Y F;  3K7A F;  4C3H E;  1TWA E;  1QKL A;  4Y7N E;  3PO2 F;  4A3D E;  5M5X F;  3HOW F;  3GTO E;  5C3E F;  3FKI E;  1Y1V E;  5C4J F;  4A3L E;  4Y52 E;  1TWG E;  5IYC F;  4A3C E;  4C3H F;  3WOD E;  1TWA F;  5TMF E;  3GTL E;  4OIP E;  5FJ8 F;  1Y1W E;  4A3D F;  1I3Q E;  1I6H F;  4C2M E;  5BYH E;  4BBS E;  3S15 E;  1SMY E;  1Y1V F;  3FKI F;  4A3E F;  4A3L F;  4Y52 F;  3EQL E;  4OIO E;  4XLP E;  5IYD E;  2E2H E;  5IP7 E;  4A3G E;  3HOV E;  3RZD E;  3GTP F;  2E2I E;  2NVX E;  1Y1W F;  3I4M F;  1I3Q F;  2A6H E;  4C2M F;  4C3I E;  4BBS F;  3S15 F;  5TMC E;  3S16 E;  1TWC E;  2NVQ E;  2WB1 I;  3PO3 E;  3GTG E;  1WCM E;  3I4N F;  4JK1 E;  5IYD F;  4X6A E;  5IP7 F;  4A3G F;  5E17 E;  3HOV F;  3RZD F;  4OIR E; 
#chains in the Genus database with same CATH homology
 2E2I F;  5C4X F;  4G7H E;  3S2H F;  4C3I F;  3HKZ K;  5M5W F;  1ZYR E;  3GTM F;  1TWC F;  4X6A F;  3PO3 F;  3GTG F;  1WCM F;  1YNJ K;  2R92 F;  4BY1 F;  4KMU E;  3CQZ F;  4Y7N F;  4G7Z E;  4YFX E;  1SFO F;  3HOZ F;  2CW0 E;  3GTO F;  4A3I F;  1TWG F;  4A3C F;  3S14 F;  4A3K F;  4YG2 E;  2JA8 F;  5IPL E;  4LJZ E;  2PMZ K;  3H3V G;  5D4D E;  3S2D F;  5IYB F;  1IW7 E;  4BBR F;  3GTK F;  2KRX A;  3H0G F;  4OIQ E;  2NVX F;  5FLM F;  4GZY E;  4YFK E;  3GTQ F;  2NVY F;  3S16 F;  5M3F F;  2NVQ F;  3RZO F;  5D4E E;  4A3B F;  4QIW K;  4ZH4 E;  4MQ9 E;  4BXX F;  1TWH F;  4AYB K;  4MEX E;  2JA7 F;  2VUM F;  5M5Y F;  3S1Q F;  2R93 F;  1I6V E;  1R9T F;  4LK1 E;  2A68 E;  1K83 F;  4KN4 E;  2B63 F;  4Q4Z E;  2JA6 F;  2E2J F;  1TWF F;  4XSZ E;  4C3J F;  4A3F F;  2WAQ K;  2A69 E;  2BE5 E;  5E18 E;  3S1M F;  1I50 F;  4YFN E;  2PPB E;  4MEY E;  3DXJ E;  4BY7 F;  4A93 F;  2O5I E;  2YU9 F;  1YNN K;  2A6E E;  4XLN E;  4LLG E;  2Y0S I;  2E2H F;  4OIN E;  5D4C E;  3S17 F;  4XSX E;  2JA5 F;  2R7Z F;  3S1R F;  1HQM E;  5M3M F;  4Q5S E;  3HOY F;  4A3M F;  4A3J F;  3GTL F;  5C44 F;  3HOX F;  4KN7 E;  3GTJ F;  3M4O F;  3S1N F;  4G7O E;  2O5J E;  2NVT F;  4LK0 E;  5IP9 F;  3HOU F;  3M3Y F;  3K7A F;  1QKL A;  3PO2 F;  5M5X F;  3HOW F;  5C3E F;  5C4J F;  5IYC F;  4C3H F;  3WOD E;  1TWA F;  5TMF E;  4OIP E;  5FJ8 F;  4A3D F;  1I6H F;  5BYH E;  1SMY E;  1Y1V F;  3FKI F;  4A3E F;  4A3L F;  4Y52 F;  3EQL E;  4OIO E;  4XLP E;  3GTP F;  1Y1W F;  3I4M F;  1I3Q F;  2A6H E;  4C2M F;  4BBS F;  3S15 F;  5TMC E;  2WB1 I;  5E17 E;  3I4N F;  4JK1 E;  5IYD F;  5IP7 F;  4A3G F;  3HOV F;  3RZD F;  4OIR E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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