2R93L

Elongation complex of rna polymerase ii with a hepatitis delta virus-derived rna stem loop
Total Genus 1
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
46
structure length
46
Chain Sequence
ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular basis of RNA-dependent RNA polymerase II activity.
pubmed doi rcsb
molecule keywords RNA (5'-R(*UP*GP*AP*UP*UP*CP*UP*CP*UP*AP*UP*CP*GP*GP*AP*AP*U
molecule tags Transferase/rna
total genus 1
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2007-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF03604 DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.30 Mainly Beta Single Sheet Rubrerythrin, domain 2 RNA polymerase ii, chain L 2r93L00
3GTGL 1TWCL 1WCML 4A3CL 2JA8L 5FLML 3GTJL 4QIWP 3GTQL 4BBSL 4A3EL 1SFOL 3GTPL 1I3QL 3H3VM 3HOUL 3M3YL 3CQZL 4C3IL 3GTML 2Y0SP 1TWGL 3H0GL 2NVQL 5C44L 3K7AL 2E2JL 5IP7L 2R92L 3I4NL 4BY1L 3RZDL 3HOWL 5FJ8L 1I6HL 3PO2L 2NVTL 4A3BL 1K83L 2WAQP 3S1QL 4Y7NL 3S2DL 5M3ML 4A3KL 4A3FL 4C3JL 4A3JL 4C2M1 3HOZL 5M5XL 2R93L 2JA6L 1Y1VL 2E2IL 2VUML 5M3FL 3HKZP 4A3IL 2JA7L 4Y52L 3FKIL 3M4OL 3S14L 3S1RL 4A3GL 4AYBP 4A3ML 4BY7L 2PMZP 4A93L 3HOYL 5C4XL 1TWFL 4BBRL 5M5WL 4A3DL 2E2HL 3HOXL 1I50L 2NVYL 3GTLL 2B63L 3S16L 3I4ML 3S2HL 4A3LL 2R7ZL 1R9TL 5IYBL 3S1ML 1TWHL 5IYCL 3S17L 1TWAL 5M5YL 4X6AL 2WB1P 3PO3L 4BXXL 2NVXL 5C3EL 3GTKL 3S15L 5C4JL 5IYDL 3S1NL 3RZOL 1Y1WL 3GTOL 5IP9L 3HOVL 4C3HL 2JA5L 2YU9L
chains in the Genus database with same CATH superfamily
2A68D 3GTGL 2JA8L 2JI2A 1VCXA 4AI2A 4G6BA 3GTQL 3HJYB 2JI3A 3H3VM 3M3YL 3CQZL 4C3IL 3PIO1 3HAXC 5DM61 2XJVA 5C44L 2E2JL 5DM71 1B71A 1DVBA 3I4NL 2A6ED 3RZDL 3HOWL 3PL5A 1K83L 2VL6A 4YWLA 1QYBA 3S2DL 3WWNB 4A3KL 4C3JL 4C2M1 3HOZL 5M5XL 4ZN3B 1QCVA 2E2IL 4B8CD 5M3FL 4A3IL 2JA7L 1T9QA 3NFPI 3LWPB 2NYDA 3JR7A 2PMZP 3PKIA 5M5WL 1H7VA 2PVXA 3K35A 5JVG1 2ZIXA 4AR3A 1R0IA 3KYWA 5EINC 2A69D 5IYCL 2A6HD 1RB9A 3PZAA 1RWDA 2CKCA 2NVXL 1JYBA 3H97A 3J7Z1 3VPBE 2MS3A 3LWQB 4YWMA 2PVEA 1LTLA 3GTOL 4JAGA 1RDGA 1S2ZA 3QQCE 4LHNA 4RXNA 1WCML 1F4LA 2ERSA 4QIWP 4BBSL 2V3BB 1BQ9A 1SFOL 1YV1A 5GADc 1ODHA 3KYYA 2M4VA 1SMWA 2PPTA 3MQKB 3KYUA 4BY1L 1I6HL 3PO2L 4A3BL 4AR4A 3S1QL 4TPUA 4Y7NL 5M3ML 2C6BA 4A3FL 4V196 4A3JL 2HR5A 2R93L 1PFWA 5JVH1 2JA6L 5MFPA 2XJUA 2CR8A 4XXBB 1NNQA 2KKDA 4AHWA 5EIOC 5IY0A 4UY81 3KYVA 3RZ6A 2M4YA 6RXNA 3S1RL 4AYBP 4A3ML 5AN9H 4A93L 1TWFL 1IU6A 1LKPA 1I50L 2B63L 1IRNA 4GS7D 3S2HL 4AR5A 2R7ZL 4A3LL 1BFYA 1R9TL 3H9CA 1Z92B 2L0ZA 3S1ML 1SMMA 1P7PA 3PWFA 1YK5A 3S17L 2K2DA 1FHMA 3P2AA 5M5YL 4X6AL 2QL0A 2DSXA 2WB1P 3P8BA 1FHHA 2AQCA 3QVDA 3H99A 2EY4E 1SMUA 4WFN1 5C4JL 1R0JA 5MLC3 1Y1WL 2HVYC 1PFYA 1NXEA 1TWCL 2XJQA 5FLML 4K9FA 1IU5A 3WWLA 3MSUA 1VZGA 1I3QL 2RFKB 4JADA 3GTML 1OWCA 2APOB 3H0GL 2NVQL 1NXGA 3LWVB 1IROA 3K7AL 5H1Sc 3KYXA 2NVTL 1RDVA 3FDJA 4U671 2V0FA 1T9OA 1PFUA 5GAEc 3RYGA 2V0EA 4AHYA 1Y1VL 3HKZP 1B13A 3SS2A 5MGNA 3S14L 2XJPA 2C6AA 3HOYL 5C4XL 4BBRL 2Z3QB 4A3DL 2E2HL 1WJVA 2PYAA 2NVYL 3J7Y1 4AHXA 3S16L 2J9UB 3I4ML 4AI3A 2O5JD 1QQTA 5IYBL 1DX8A 1TWHL 3MPSA 1CADA 1LKMA 1BRFA 2KN9A 5GAGc 3B08B 3HJWB 3PO3L 1T9PA 5C3EL 3GTKL 5IYDL 1OWBA 4ZN1B 8RXNA 1ZRPA 3LPEB 5IP9L 3HOVL 4C3HL 2AYJA 3LWRB 4ME3A 1IW7D 4AI1A 1PFVA 4JAFA 4A3CL 5MF6A 3B0AB 1VZHA 3GTJL 1LKOA 4A3EL 3GTPL 3LNLA 4XGHA 3LWOB 3HOUL 2Y0SP 2M6PA 5AI2A 1TWGL 1YK4A 4LHLA 2PSMC 5MFZA 2XJTA 1BQ8A 2RDVA 5IP7L 2R92L 2LCQA 2GMGA 1VZIA 5FJ8L 1R0FA 5GAHc 2M6OA 2WAQP 1RYTA 2CKAA 3A44A 2BE5D 1S24A 5RXNA 2VUML 4E6YA 3RZTA 1YUXA 2Z3RB 4Y52L 3FKIL 2AUSB 1E8JA 4JAEA 2XJSA 4TVMA 3M4OL 1RYQA 1C09A 4A3GL 7RXNA 2XJRA 3H9BA 4POGA 4BY7L 5AI3A 1CAAA 3HOXL 1B2JA 2B5ID 3GTLL 3PKJA 1S30A 2JI1A 1YUZA 4POFA 4AHZA 3IU3I 4AR6A 1PZXA 3ZG6A 1TWAL 2ERJA 4BXXL 4AI0A 1BE7A 1R0GA 5K2ME 3S15L 3S1NL 1B2OA 3RZOL 1R0HA 2JA5L 3PIP1 2H12A 2YU9L
chains in the Genus database with same CATH topology
3GTGL 1TWCL 1WCML 4A3CL 2JA8L 5FLML 3GTJL 4QIWP 3GTQL 4BBSL 4A3EL 1SFOL 3GTPL 1I3QL 3H3VM 3HOUL 3M3YL 3CQZL 4C3IL 3GTML 2Y0SP 1TWGL 3H0GL 2NVQL 5C44L 3K7AL 2E2JL 5IP7L 2R92L 3I4NL 4BY1L 3RZDL 3HOWL 5FJ8L 1I6HL 3PO2L 2NVTL 4A3BL 1K83L 2WAQP 3S1QL 4Y7NL 3S2DL 5M3ML 4A3KL 4A3FL 4C3JL 4A3JL 4C2M1 3HOZL 5M5XL 2R93L 2JA6L 1Y1VL 2E2IL 2VUML 5M3FL 3HKZP 4A3IL 2JA7L 4Y52L 3FKIL 3M4OL 3S14L 3S1RL 4A3GL 4AYBP 4A3ML 4BY7L 2PMZP 4A93L 3HOYL 5C4XL 1TWFL 4BBRL 5M5WL 4A3DL 2E2HL 3HOXL 1I50L 2NVYL 3GTLL 2B63L 3S16L 3I4ML 3S2HL 4A3LL 2R7ZL 1R9TL 5IYBL 3S1ML 1TWHL 5IYCL 3S17L 1TWAL 5M5YL 4X6AL 2WB1P 3PO3L 4BXXL 2NVXL 5C3EL 3GTKL 3S15L 5C4JL 5IYDL 3S1NL 3RZOL 1Y1WL 3GTOL 5IP9L 3HOVL 4C3HL 2JA5L 2YU9L
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GTG L;  1TWC L;  1WCM L;  4A3C L;  2JA8 L;  5FLM L;  3GTJ L;  4QIW P;  3GTQ L;  4BBS L;  4A3E L;  1SFO L;  3GTP L;  1I3Q L;  3H3V M;  3HOU L;  3M3Y L;  3CQZ L;  4C3I L;  3GTM L;  2Y0S P;  1TWG L;  3H0G L;  2NVQ L;  5C44 L;  3K7A L;  2E2J L;  5IP7 L;  2R92 L;  3I4N L;  4BY1 L;  3RZD L;  3HOW L;  5FJ8 L;  1I6H L;  3PO2 L;  2NVT L;  4A3B L;  1K83 L;  2WAQ P;  3S1Q L;  4Y7N L;  3S2D L;  5M3M L;  4A3K L;  4A3F L;  4C3J L;  4A3J L;  4C2M 1;  3HOZ L;  5M5X L;  2R93 L;  2JA6 L;  1Y1V L;  2E2I L;  2VUM L;  5M3F L;  3HKZ P;  4A3I L;  2JA7 L;  4Y52 L;  3FKI L;  3M4O L;  3S14 L;  3S1R L;  4A3G L;  4AYB P;  4A3M L;  4BY7 L;  2PMZ P;  4A93 L;  3HOY L;  5C4X L;  1TWF L;  4BBR L;  5M5W L;  4A3D L;  2E2H L;  3HOX L;  1I50 L;  2NVY L;  3GTL L;  2B63 L;  3S16 L;  3I4M L;  3S2H L;  4A3L L;  2R7Z L;  1R9T L;  5IYB L;  3S1M L;  1TWH L;  5IYC L;  3S17 L;  1TWA L;  5M5Y L;  4X6A L;  2WB1 P;  3PO3 L;  4BXX L;  2NVX L;  5C3E L;  3GTK L;  3S15 L;  5C4J L;  5IYD L;  3S1N L;  3RZO L;  1Y1W L;  3GTO L;  5IP9 L;  3HOV L;  4C3H L;  2JA5 L;  2YU9 L; 
#chains in the Genus database with same CATH topology
 2A68 D;  3GTG L;  2JA8 L;  2JI2 A;  1VCX A;  4AI2 A;  4G6B A;  3GTQ L;  3HJY B;  2JI3 A;  3H3V M;  3M3Y L;  3CQZ L;  4C3I L;  3PIO 1;  3HAX C;  5DM6 1;  2XJV A;  5C44 L;  2E2J L;  5DM7 1;  1B71 A;  1DVB A;  3I4N L;  2A6E D;  3RZD L;  3HOW L;  3PL5 A;  1K83 L;  2VL6 A;  4YWL A;  1QYB A;  3S2D L;  3WWN B;  4A3K L;  4C3J L;  4C2M 1;  3HOZ L;  5M5X L;  4ZN3 B;  1QCV A;  2E2I L;  4B8C D;  5M3F L;  4A3I L;  2JA7 L;  1T9Q A;  3NFP I;  3LWP B;  2NYD A;  3JR7 A;  2PMZ P;  3PKI A;  5M5W L;  1H7V A;  2PVX A;  3K35 A;  5JVG 1;  2ZIX A;  4AR3 A;  1R0I A;  3KYW A;  5EIN C;  2A69 D;  5IYC L;  2A6H D;  1RB9 A;  3PZA A;  1RWD A;  2CKC A;  2NVX L;  1JYB A;  3H97 A;  3J7Z 1;  3VPB E;  2MS3 A;  3LWQ B;  4YWM A;  2PVE A;  1LTL A;  3GTO L;  4JAG A;  1RDG A;  1S2Z A;  3QQC E;  4LHN A;  4RXN A;  1WCM L;  1F4L A;  2ERS A;  4QIW P;  4BBS L;  2V3B B;  1BQ9 A;  1SFO L;  1YV1 A;  5GAD c;  1ODH A;  3KYY A;  2M4V A;  1SMW A;  2PPT A;  3MQK B;  3KYU A;  4BY1 L;  1I6H L;  3PO2 L;  4A3B L;  4AR4 A;  3S1Q L;  4TPU A;  4Y7N L;  5M3M L;  2C6B A;  4A3F L;  4V19 6;  4A3J L;  2HR5 A;  2R93 L;  1PFW A;  5JVH 1;  2JA6 L;  5MFP A;  2XJU A;  2CR8 A;  4XXB B;  1NNQ A;  2KKD A;  4AHW A;  5EIO C;  5IY0 A;  4UY8 1;  3KYV A;  3RZ6 A;  2M4Y A;  6RXN A;  3S1R L;  4AYB P;  4A3M L;  5AN9 H;  4A93 L;  1TWF L;  1IU6 A;  1LKP A;  1I50 L;  2B63 L;  1IRN A;  4GS7 D;  3S2H L;  4AR5 A;  2R7Z L;  4A3L L;  1BFY A;  1R9T L;  3H9C A;  1Z92 B;  2L0Z A;  3S1M L;  1SMM A;  1P7P A;  3PWF A;  1YK5 A;  3S17 L;  2K2D A;  1FHM A;  3P2A A;  5M5Y L;  4X6A L;  2QL0 A;  2DSX A;  2WB1 P;  3P8B A;  1FHH A;  2AQC A;  3QVD A;  3H99 A;  2EY4 E;  1SMU A;  4WFN 1;  5C4J L;  1R0J A;  5MLC 3;  1Y1W L;  2HVY C;  1PFY A;  1NXE A;  1TWC L;  2XJQ A;  5FLM L;  4K9F A;  1IU5 A;  3WWL A;  3MSU A;  1VZG A;  1I3Q L;  2RFK B;  4JAD A;  3GTM L;  1OWC A;  2APO B;  3H0G L;  2NVQ L;  1NXG A;  3LWV B;  1IRO A;  3K7A L;  5H1S c;  3KYX A;  2NVT L;  1RDV A;  3FDJ A;  4U67 1;  2V0F A;  1T9O A;  1PFU A;  5GAE c;  3RYG A;  2V0E A;  4AHY A;  1Y1V L;  3HKZ P;  1B13 A;  3SS2 A;  5MGN A;  3S14 L;  2XJP A;  2C6A A;  3HOY L;  5C4X L;  4BBR L;  2Z3Q B;  4A3D L;  2E2H L;  1WJV A;  2PYA A;  2NVY L;  3J7Y 1;  4AHX A;  3S16 L;  2J9U B;  3I4M L;  4AI3 A;  2O5J D;  1QQT A;  5IYB L;  1DX8 A;  1TWH L;  3MPS A;  1CAD A;  1LKM A;  1BRF A;  2KN9 A;  5GAG c;  3B08 B;  3HJW B;  3PO3 L;  1T9P A;  5C3E L;  3GTK L;  5IYD L;  1OWB A;  4ZN1 B;  8RXN A;  1ZRP A;  3LPE B;  5IP9 L;  3HOV L;  4C3H L;  2AYJ A;  3LWR B;  4ME3 A;  1IW7 D;  4AI1 A;  1PFV A;  4JAF A;  4A3C L;  5MF6 A;  3B0A B;  1VZH A;  3GTJ L;  1LKO A;  4A3E L;  3GTP L;  3LNL A;  4XGH A;  3LWO B;  3HOU L;  2Y0S P;  2M6P A;  5AI2 A;  1TWG L;  1YK4 A;  4LHL A;  2PSM C;  5MFZ A;  2XJT A;  1BQ8 A;  2RDV A;  5IP7 L;  2R92 L;  2LCQ A;  2GMG A;  1VZI A;  5FJ8 L;  1R0F A;  5GAH c;  2M6O A;  2WAQ P;  1RYT A;  2CKA A;  3A44 A;  2BE5 D;  1S24 A;  5RXN A;  2VUM L;  4E6Y A;  3RZT A;  1YUX A;  2Z3R B;  4Y52 L;  3FKI L;  2AUS B;  1E8J A;  4JAE A;  2XJS A;  4TVM A;  3M4O L;  1RYQ A;  1C09 A;  4A3G L;  7RXN A;  2XJR A;  3H9B A;  4POG A;  4BY7 L;  5AI3 A;  1CAA A;  3HOX L;  1B2J A;  2B5I D;  3GTL L;  3PKJ A;  1S30 A;  2JI1 A;  1YUZ A;  4POF A;  4AHZ A;  3IU3 I;  4AR6 A;  1PZX A;  3ZG6 A;  1TWA L;  2ERJ A;  4BXX L;  4AI0 A;  1BE7 A;  1R0G A;  5K2M E;  3S15 L;  3S1N L;  1B2O A;  3RZO L;  1R0H A;  2JA5 L;  3PIP 1;  2H12 A;  2YU9 L; 
#chains in the Genus database with same CATH homology
 3GTG L;  1TWC L;  1WCM L;  4A3C L;  2JA8 L;  5FLM L;  3GTJ L;  4QIW P;  3GTQ L;  4BBS L;  4A3E L;  1SFO L;  3GTP L;  1I3Q L;  3H3V M;  3HOU L;  3M3Y L;  3CQZ L;  4C3I L;  3GTM L;  2Y0S P;  1TWG L;  3H0G L;  2NVQ L;  5C44 L;  3K7A L;  2E2J L;  5IP7 L;  2R92 L;  3I4N L;  4BY1 L;  3RZD L;  3HOW L;  5FJ8 L;  1I6H L;  3PO2 L;  2NVT L;  4A3B L;  1K83 L;  2WAQ P;  3S1Q L;  4Y7N L;  3S2D L;  5M3M L;  4A3K L;  4A3F L;  4C3J L;  4A3J L;  4C2M 1;  3HOZ L;  5M5X L;  2R93 L;  2JA6 L;  1Y1V L;  2E2I L;  2VUM L;  5M3F L;  3HKZ P;  4A3I L;  2JA7 L;  4Y52 L;  3FKI L;  3M4O L;  3S14 L;  3S1R L;  4A3G L;  4AYB P;  4A3M L;  4BY7 L;  2PMZ P;  4A93 L;  3HOY L;  5C4X L;  1TWF L;  4BBR L;  5M5W L;  4A3D L;  2E2H L;  3HOX L;  1I50 L;  2NVY L;  3GTL L;  2B63 L;  3S16 L;  3I4M L;  3S2H L;  4A3L L;  2R7Z L;  1R9T L;  5IYB L;  3S1M L;  1TWH L;  5IYC L;  3S17 L;  1TWA L;  5M5Y L;  4X6A L;  2WB1 P;  3PO3 L;  4BXX L;  2NVX L;  5C3E L;  3GTK L;  3S15 L;  5C4J L;  5IYD L;  3S1N L;  3RZO L;  1Y1W L;  3GTO L;  5IP9 L;  3HOV L;  4C3H L;  2JA5 L;  2YU9 L; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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