2RVEA

The crystal structure of ecorv endonuclease and of its complexes with cognate and non-cognate dna segments
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
239
structure length
213
Chain Sequence
SLRSDLINALYYDVCGIISAEGKIYPLGSDTKVLSTIFELFSRPIINKIAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKKIAIDIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRTYNINELNEIPKPYKGVKVFLQDKWVIAGDLAGSTNIGSIHAHYKDFVEGKGIFDSEDEFLDYWRNYEYNNISEYRNWI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA (5'-D(*CP*GP*AP*GP*CP*TP*CP*G)-3')
publication title The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments.
pubmed rcsb
source organism Escherichia coli
total genus 56
structure length 213
sequence length 239
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1991-03-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09233 Endonuc-EcoRV Restriction endonuclease EcoRV
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.600.10 Alpha Beta 3-Layer(aba) Sandwich ECO RV Endonuclease; Chain A DNA mismatch repair MutH/Restriction endonuclease, type II 2rveA00
1XHVA 1RVEA 2GIIA 5F8AA 2AOQA 1BUAA 4PXGA 1EONA 3E40A 1XHUA 1SX5A 3E41A 1AZ4A 1AZOA 1KC6A 1IAWA 1EOOA 1AZ0A 1EOPA 3E42A 1TX3A 1AZ3A 2GIHA 2GIEA 1EV7A 1RV5A 1STXA 1RVBA 2GIGA 3E44A 2REUA 2AZOA 1TW8A 1SUZA 3E43A 1RVAA 1RVCA 4RVEA 3E45A 1EO4A 1BSUA 1B94A 2B0EA 2RVEA 1BGBA 1EO3A 1B96A 2B0DA 2GIJA 3E3YA 2GE5A 1B95A 1SX8A 1B97A 5HLKA 1BSSA 2AORA 2AUDA 3EBCA
chains in the Genus database with same CATH superfamily
1XHVA 1RVEA 2GIIA 5F8AA 2AOQA 1BUAA 4PXGA 1EONA 3E40A 1XHUA 1SX5A 3E41A 1AZ4A 2EZVA 1AZOA 1KC6A 1IAWA 1EOOA 1AZ0A 1EOPA 3E42A 1TX3A 1AZ3A 3NDHA 2GIEA 2GIHA 1EV7A 1RV5A 1STXA 1RVBA 2GIGA 3E44A 2REUA 2AZOA 1TW8A 1SUZA 3E43A 1RVAA 1RVCA 4RVEA 3E45A 1DMUA 1BSUA 1EO4A 1B94A 2B0EA 2RVEA 1BGBA 1EO3A 1B96A 2B0DA 2GIJA 3E3YA 2GE5A 1B95A 1SX8A 1B97A 5HLKA 1BSSA 2AORA 2AUDA 3EBCA 2F03A
chains in the Genus database with same CATH topology
1XHVA 1RVEA 2GIIA 5F8AA 2AOQA 1BUAA 4PXGA 1EONA 3E40A 1XHUA 1SX5A 3E41A 1AZ4A 1AZOA 1KC6A 1IAWA 1EOOA 1AZ0A 1EOPA 3E42A 1TX3A 1AZ3A 2GIHA 2GIEA 1EV7A 1RV5A 1STXA 1RVBA 2GIGA 3E44A 2REUA 2AZOA 1TW8A 1SUZA 3E43A 1RVAA 1RVCA 4RVEA 3E45A 1EO4A 1BSUA 1B94A 2B0EA 2RVEA 1BGBA 1EO3A 1B96A 2B0DA 2GIJA 3E3YA 2GE5A 1B95A 1SX8A 1B97A 5HLKA 1BSSA 2AORA 2AUDA 3EBCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XHV A;  1RVE A;  2GII A;  5F8A A;  2AOQ A;  1BUA A;  4PXG A;  1EON A;  3E40 A;  1XHU A;  1SX5 A;  3E41 A;  1AZ4 A;  1AZO A;  1KC6 A;  1IAW A;  1EOO A;  1AZ0 A;  1EOP A;  3E42 A;  1TX3 A;  1AZ3 A;  2GIH A;  2GIE A;  1EV7 A;  1RV5 A;  1STX A;  1RVB A;  2GIG A;  3E44 A;  2REU A;  2AZO A;  1TW8 A;  1SUZ A;  3E43 A;  1RVA A;  1RVC A;  4RVE A;  3E45 A;  1EO4 A;  1BSU A;  1B94 A;  2B0E A;  2RVE A;  1BGB A;  1EO3 A;  1B96 A;  2B0D A;  2GIJ A;  3E3Y A;  2GE5 A;  1B95 A;  1SX8 A;  1B97 A;  5HLK A;  1BSS A;  2AOR A;  2AUD A;  3EBC A; 
#chains in the Genus database with same CATH topology
 1XHV A;  1RVE A;  2GII A;  5F8A A;  2AOQ A;  1BUA A;  4PXG A;  1EON A;  3E40 A;  1XHU A;  1SX5 A;  3E41 A;  1AZ4 A;  2EZV A;  1AZO A;  1KC6 A;  1IAW A;  1EOO A;  1AZ0 A;  1EOP A;  3E42 A;  1TX3 A;  1AZ3 A;  3NDH A;  2GIE A;  2GIH A;  1EV7 A;  1RV5 A;  1STX A;  1RVB A;  2GIG A;  3E44 A;  2REU A;  2AZO A;  1TW8 A;  1SUZ A;  3E43 A;  1RVA A;  1RVC A;  4RVE A;  3E45 A;  1DMU A;  1BSU A;  1EO4 A;  1B94 A;  2B0E A;  2RVE A;  1BGB A;  1EO3 A;  1B96 A;  2B0D A;  2GIJ A;  3E3Y A;  2GE5 A;  1B95 A;  1SX8 A;  1B97 A;  5HLK A;  1BSS A;  2AOR A;  2AUD A;  3EBC A;  2F03 A; 
#chains in the Genus database with same CATH homology
 1XHV A;  1RVE A;  2GII A;  5F8A A;  2AOQ A;  1BUA A;  4PXG A;  1EON A;  3E40 A;  1XHU A;  1SX5 A;  3E41 A;  1AZ4 A;  1AZO A;  1KC6 A;  1IAW A;  1EOO A;  1AZ0 A;  1EOP A;  3E42 A;  1TX3 A;  1AZ3 A;  2GIH A;  2GIE A;  1EV7 A;  1RV5 A;  1STX A;  1RVB A;  2GIG A;  3E44 A;  2REU A;  2AZO A;  1TW8 A;  1SUZ A;  3E43 A;  1RVA A;  1RVC A;  4RVE A;  3E45 A;  1EO4 A;  1BSU A;  1B94 A;  2B0E A;  2RVE A;  1BGB A;  1EO3 A;  1B96 A;  2B0D A;  2GIJ A;  3E3Y A;  2GE5 A;  1B95 A;  1SX8 A;  1B97 A;  5HLK A;  1BSS A;  2AOR A;  2AUD A;  3EBC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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