2V3JA

The yeast ribosome synthesis factor emg1 alpha beta knot fold methyltransferase
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
Knots found
sequence length
229
structure length
217
Chain Sequence
LVPQAPPVLTSKDKITKRMIVVLAMASLETHKIYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Yeast Ribosome Synthesis Factor Emg1 is a Novel Member of the Superfamily of Alpha/Beta Knot Fold Methyltransferases.
pubmed doi rcsb
molecule keywords ESSENTIAL FOR MITOTIC GROWTH 1
molecule tags Ribosomal protein
source organism Saccharomyces cerevisiae
total genus 60
structure length 217
sequence length 229
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1.
pdb deposition date 2007-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03587 EMG1 EMG1/NEP1 methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 2v3jA01
1X7PA 2Z0YA 5GMCA 4KDZA 4YQ4A 4YQDA 4YPZA 1X7OA 3ONPA 1UAMA 4YQ3A 4YQLA 2V3KA 3KY7A 4L69A 4YQAA 3BBHA 1VHKA 4YQQA 3IC6A 4CNDA 4YVKA 4YQTA 1GZ0A 4YPYA 1VH0A 4KGNA 3DCMX 3NK6A 1TO0A 4JAKA 4FAKA 4XBOA 3NK7A 4PZKA 2HA8A 1P9PA 4JALA 4YQGA 4YQOA 4E8BA 3OIJA 1NS5A 4MCCA 3QUVA 2I6DA 2YY8A 4MCDA 5FAIA 3N4KA 4YQKA 4X3MA 4YQIA 3BBEA 4MCBA 4YQ1A 3KW2A 3E5YA 4YVGA 2O3AA 1VHYA 1UAJA 3L8UA 2QMMA 2V3JA 4CNFA 4YQ7A 1V2XA 3N4JA 4YQRA 4YVIA 3ILKA 1K3RA 4YQJA 4YQ5A 4J3CA 1V6ZA 1OY5A 1IPAA 4YVHA 4IG6A 4YQSA 4YQ6A 3BBDA 1NXZA 1UAKA 1MXIA 2CX8A 4CNEA 3GYQA 1Z85A 4RG1A 4YQ0A 4YPWA 1ZJRA 1UALA 4CNGA 3KTYA 4YQ9A 4YVJA 4YQ8A 1J85A 4YQNA 2EGWA 3O7BA 4YQPA 4YQ2A 4YQCA 3AIAA 5GMBA 3IEFA 5GM8A 3AXZA 3OINA 2EGVA 5CO4A 4H3YA 4YPXA 1O6DA 4H3ZA 2QWVA 3OIIA 3KNUA 3AI9X 5D9FA 4X3LA 4YQBA
chains in the Genus database with same CATH superfamily
1X7PA 2Z0YA 5GMCA 4KDZA 4YQ4A 4YQDA 4YPZA 1X7OA 3ONPA 1UAMA 4YQ3A 4JWHA 2V3KA 4YQLA 3KY7A 4L69A 4YQAA 3BBHA 1VHKA 4YQQA 3IC6A 4CNDA 4YVKA 4YQTA 1GZ0A 4YPYA 1VH0A 4KGNA 3DCMX 3NK6A 1TO0A 4JAKA 4FAKA 4XBOA 3NK7A 4PZKA 2HA8A 1P9PA 4JALA 4YQGA 4YQOA 4E8BA 3OIJA 1NS5A 4MCCA 3QUVA 2I6DA 2YY8A 4MCDA 5FAIA 3N4KA 4YQKA 4X3MA 4YQIA 3BBEA 4MCBA 4YQ1A 3KW2A 3E5YA 4JWJA 4YVGA 2O3AA 1VHYA 1UAJA 3L8UA 2QMMA 2V3JA 4CNFA 4YQ7A 4JWFA 1V2XA 3N4JA 4YQRA 4YVIA 3ILKA 1K3RA 4YQJA 4YQ5A 4J3CA 1V6ZA 1OY5A 1IPAA 4YVHA 4IG6A 4YQSA 4YQ6A 3BBDA 4JWGA 1NXZA 1UAKA 1MXIA 2CX8A 4CNEA 4FMWA 3GYQA 1Z85A 4RG1A 4YQ0A 4YPWA 1ZJRA 1UALA 4CNGA 3KTYA 4YQ9A 4YVJA 4YQ8A 1J85A 4YQNA 2EGWA 3O7BA 4YQPA 4YQ2A 4YQCA 3AIAA 5GMBA 3IEFA 5GM8A 3AXZA 3OINA 2EGVA 5CO4A 4H3YA 4YPXA 1O6DA 4H3ZA 2QWVA 3OIIA 3KNUA 3AI9X 5D9FA 4X3LA 4YQBA
chains in the Genus database with same CATH topology
1X7PA 2Z0YA 5GMCA 4KDZA 4YQ4A 4YQDA 4YPZA 1X7OA 3ONPA 1UAMA 4YQ3A 4JWHA 2V3KA 4YQLA 3KY7A 4L69A 4YQAA 3BBHA 1VHKA 4YQQA 3IC6A 4CNDA 4YVKA 4YQTA 1GZ0A 4YPYA 1VH0A 4KGNA 3DCMX 3NK6A 1TO0A 4JAKA 4FAKA 4XBOA 3NK7A 4PZKA 2HA8A 1P9PA 4JALA 4YQGA 4YQOA 4E8BA 3OIJA 1NS5A 4MCCA 3QUVA 2I6DA 2YY8A 4MCDA 5FAIA 3N4KA 4YQKA 4X3MA 4YQIA 3BBEA 4MCBA 4YQ1A 3KW2A 3E5YA 4JWJA 4YVGA 2O3AA 1VHYA 1UAJA 3L8UA 2QMMA 2V3JA 4CNFA 4YQ7A 4JWFA 1V2XA 3N4JA 4YQRA 4YVIA 3ILKA 1K3RA 4YQJA 4YQ5A 4J3CA 1V6ZA 1OY5A 1IPAA 4YVHA 4IG6A 4YQSA 4YQ6A 3BBDA 4JWGA 1NXZA 1UAKA 1MXIA 2CX8A 4CNEA 4FMWA 3GYQA 1Z85A 4RG1A 4YQ0A 4YPWA 1ZJRA 1UALA 4CNGA 3KTYA 4YQ9A 4YVJA 4YQ8A 1J85A 4YQNA 2EGWA 3O7BA 4YQPA 4YQ2A 4YQCA 3AIAA 5GMBA 3IEFA 5GM8A 3AXZA 3OINA 2EGVA 5CO4A 4H3YA 4YPXA 1O6DA 4H3ZA 2QWVA 3OIIA 3KNUA 3AI9X 5D9FA 4X3LA 4YQBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X7P A;  2Z0Y A;  5GMC A;  4KDZ A;  4YQ4 A;  4YQD A;  4YPZ A;  1X7O A;  3ONP A;  1UAM A;  4YQ3 A;  4YQL A;  2V3K A;  3KY7 A;  4L69 A;  4YQA A;  3BBH A;  1VHK A;  4YQQ A;  3IC6 A;  4CND A;  4YVK A;  4YQT A;  1GZ0 A;  4YPY A;  1VH0 A;  4KGN A;  3DCM X;  3NK6 A;  1TO0 A;  4JAK A;  4FAK A;  4XBO A;  3NK7 A;  4PZK A;  2HA8 A;  1P9P A;  4JAL A;  4YQG A;  4YQO A;  4E8B A;  3OIJ A;  1NS5 A;  4MCC A;  3QUV A;  2I6D A;  2YY8 A;  4MCD A;  5FAI A;  3N4K A;  4YQK A;  4X3M A;  4YQI A;  3BBE A;  4MCB A;  4YQ1 A;  3KW2 A;  3E5Y A;  4YVG A;  2O3A A;  1VHY A;  1UAJ A;  3L8U A;  2QMM A;  2V3J A;  4CNF A;  4YQ7 A;  1V2X A;  3N4J A;  4YQR A;  4YVI A;  3ILK A;  1K3R A;  4YQJ A;  4YQ5 A;  4J3C A;  1V6Z A;  1OY5 A;  1IPA A;  4YVH A;  4IG6 A;  4YQS A;  4YQ6 A;  3BBD A;  1NXZ A;  1UAK A;  1MXI A;  2CX8 A;  4CNE A;  3GYQ A;  1Z85 A;  4RG1 A;  4YQ0 A;  4YPW A;  1ZJR A;  1UAL A;  4CNG A;  3KTY A;  4YQ9 A;  4YVJ A;  4YQ8 A;  1J85 A;  4YQN A;  2EGW A;  3O7B A;  4YQP A;  4YQ2 A;  4YQC A;  3AIA A;  5GMB A;  3IEF A;  5GM8 A;  3AXZ A;  3OIN A;  2EGV A;  5CO4 A;  4H3Y A;  4YPX A;  1O6D A;  4H3Z A;  2QWV A;  3OII A;  3KNU A;  3AI9 X;  5D9F A;  4X3L A;  4YQB A; 
#chains in the Genus database with same CATH topology
 1X7P A;  2Z0Y A;  5GMC A;  4KDZ A;  4YQ4 A;  4YQD A;  4YPZ A;  1X7O A;  3ONP A;  1UAM A;  4YQ3 A;  4JWH A;  2V3K A;  4YQL A;  3KY7 A;  4L69 A;  4YQA A;  3BBH A;  1VHK A;  4YQQ A;  3IC6 A;  4CND A;  4YVK A;  4YQT A;  1GZ0 A;  4YPY A;  1VH0 A;  4KGN A;  3DCM X;  3NK6 A;  1TO0 A;  4JAK A;  4FAK A;  4XBO A;  3NK7 A;  4PZK A;  2HA8 A;  1P9P A;  4JAL A;  4YQG A;  4YQO A;  4E8B A;  3OIJ A;  1NS5 A;  4MCC A;  3QUV A;  2I6D A;  2YY8 A;  4MCD A;  5FAI A;  3N4K A;  4YQK A;  4X3M A;  4YQI A;  3BBE A;  4MCB A;  4YQ1 A;  3KW2 A;  3E5Y A;  4JWJ A;  4YVG A;  2O3A A;  1VHY A;  1UAJ A;  3L8U A;  2QMM A;  2V3J A;  4CNF A;  4YQ7 A;  4JWF A;  1V2X A;  3N4J A;  4YQR A;  4YVI A;  3ILK A;  1K3R A;  4YQJ A;  4YQ5 A;  4J3C A;  1V6Z A;  1OY5 A;  1IPA A;  4YVH A;  4IG6 A;  4YQS A;  4YQ6 A;  3BBD A;  4JWG A;  1NXZ A;  1UAK A;  1MXI A;  2CX8 A;  4CNE A;  4FMW A;  3GYQ A;  1Z85 A;  4RG1 A;  4YQ0 A;  4YPW A;  1ZJR A;  1UAL A;  4CNG A;  3KTY A;  4YQ9 A;  4YVJ A;  4YQ8 A;  1J85 A;  4YQN A;  2EGW A;  3O7B A;  4YQP A;  4YQ2 A;  4YQC A;  3AIA A;  5GMB A;  3IEF A;  5GM8 A;  3AXZ A;  3OIN A;  2EGV A;  5CO4 A;  4H3Y A;  4YPX A;  1O6D A;  4H3Z A;  2QWV A;  3OII A;  3KNU A;  3AI9 X;  5D9F A;  4X3L A;  4YQB A; 
#chains in the Genus database with same CATH homology
 1X7P A;  2Z0Y A;  5GMC A;  4KDZ A;  4YQ4 A;  4YQD A;  4YPZ A;  1X7O A;  3ONP A;  1UAM A;  4YQ3 A;  4JWH A;  2V3K A;  4YQL A;  3KY7 A;  4L69 A;  4YQA A;  3BBH A;  1VHK A;  4YQQ A;  3IC6 A;  4CND A;  4YVK A;  4YQT A;  1GZ0 A;  4YPY A;  1VH0 A;  4KGN A;  3DCM X;  3NK6 A;  1TO0 A;  4JAK A;  4FAK A;  4XBO A;  3NK7 A;  4PZK A;  2HA8 A;  1P9P A;  4JAL A;  4YQG A;  4YQO A;  4E8B A;  3OIJ A;  1NS5 A;  4MCC A;  3QUV A;  2I6D A;  2YY8 A;  4MCD A;  5FAI A;  3N4K A;  4YQK A;  4X3M A;  4YQI A;  3BBE A;  4MCB A;  4YQ1 A;  3KW2 A;  3E5Y A;  4JWJ A;  4YVG A;  2O3A A;  1VHY A;  1UAJ A;  3L8U A;  2QMM A;  2V3J A;  4CNF A;  4YQ7 A;  4JWF A;  1V2X A;  3N4J A;  4YQR A;  4YVI A;  3ILK A;  1K3R A;  4YQJ A;  4YQ5 A;  4J3C A;  1V6Z A;  1OY5 A;  1IPA A;  4YVH A;  4IG6 A;  4YQS A;  4YQ6 A;  3BBD A;  4JWG A;  1NXZ A;  1UAK A;  1MXI A;  2CX8 A;  4CNE A;  4FMW A;  3GYQ A;  1Z85 A;  4RG1 A;  4YQ0 A;  4YPW A;  1ZJR A;  1UAL A;  4CNG A;  3KTY A;  4YQ9 A;  4YVJ A;  4YQ8 A;  1J85 A;  4YQN A;  2EGW A;  3O7B A;  4YQP A;  4YQ2 A;  4YQC A;  3AIA A;  5GMB A;  3IEF A;  5GM8 A;  3AXZ A;  3OIN A;  2EGV A;  5CO4 A;  4H3Y A;  4YPX A;  1O6D A;  4H3Z A;  2QWV A;  3OII A;  3KNU A;  3AI9 X;  5D9F A;  4X3L A;  4YQB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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