2VGHA

Heparin-binding domain from vascular endothelial growth factor, nmr, minimized average structure
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
55
structure length
55
Chain Sequence
ARQENPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Growth factor
molecule keywords VASCULAR ENDOTHELIAL GROWTH FACTOR-165
publication title Solution structure of the heparin-binding domain of vascular endothelial growth factor.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 1997-12-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.160.10 Mainly Beta Ribbon Vascular Endothelial Growth Factor-165, Heparin-binding Domain Vascular endothelial growth factor, heparin-binding domain 2vghA00
2VGHA 1VGHA 4DEQA 1KMXA
chains in the Genus database with same CATH superfamily
2VGHA 1VGHA 4DEQA 1KMXA
chains in the Genus database with same CATH topology
2VGHA 1VGHA 4DEQA 1KMXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VGH A;  1VGH A;  4DEQ A;  1KMX A; 
#chains in the Genus database with same CATH topology
 2VGH A;  1VGH A;  4DEQ A;  1KMX A; 
#chains in the Genus database with same CATH homology
 2VGH A;  1VGH A;  4DEQ A;  1KMX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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