2W78A

Structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(atcc13535)-fe complex
Total Genus 229
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
229
sequence length
772
structure length
772
Chain Sequence
QEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter.
pubmed doi rcsb
molecule keywords FERRIPYOVERDINE RECEPTOR
molecule tags Receptor
source organism Pseudomonas aeruginosa
total genus 229
structure length 772
sequence length 772
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07660 STN Secretin and TonB N terminus short domain
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 2w78A03
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 2w78A02
3.55.50.30 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Phage tail protein beta-alpha-beta fold 2w78A01
4CU4A 1UJWA 3FHHA 3CSNA 2YSUA 3CSLA 4EPAA 3EZJA 2GRXA 1NQEA 5FOKA 2FCPA 1PNZA 2O5PA 1ZZVA 3GR5A 4JTMA 2M5JA 3RGNA 1NQHA 4RDRA 4B7OA 4G08A 1KMPA 2W76A 4M0NA 1PO0A 4RDTA 4AIQA 2W77A 1BY5A 1QJQA 1FEPA 2GUFA 2IAHA 3M8DA 3V8XA 1FCPA 3DDRA 1XKHA 2W75A 2W6UA 1KMOA 3RGMA 4AIPA 1NQFA 2W6TA 2W78A 1QFFA 1BY3A 2HDIA 4AR0A 1QFGA 3V89A 3M8BA 2W16A 1FI1A 1PO3A 2D1UA 1QKCA 3EFMA 4M0HA 1XKWA 1NQGA 3QLBA 2A02A 2GSKA 2HDFA
chains in the Genus database with same CATH superfamily
3CSNA 4EPAA 1A0SP 1WRUA 1MPRA 2GRXA 2O5PA 3RGNA 4RDRA 1KMPA 1WTHD 4M0NA 3V8XA 1FEPA 1JBIA 1FCPA 1KMOA 4AIPA 1NQFA 1MALA 1MPQA 3V89A 3EFMA 1NQGA 2P5ZX 2FCPA 1PNZA 2MPRA 2M5JA 1NQHA 4UHVA 1PO0A 2IAHA 2L4WA 3RGMA 2W78A 1BY3A 1QFFA 3M8BA 2Z6BD 4M0HA 3CDDA 4CU4A 3FHHA 3CSLA 3EZJA 1A0TP 1AF6A 4MTKA 1ZZVA 3GR5A 2X531 4B7OA 2W76A 1OH2P 1QJQA 2GUFA 3M8DA 3OV5A 2W6UA 2HDIA 4AR0A 1QFGA 2W16A 1PO3A 2D1UA 1XKWA 2A02A 2W6TA 2GSKA 1UJWA 3D37A 2YSUA 1MPMA 1NQEA 5FOKA 4JTMA 3GS9A 4G08A 4RDTA 4AIQA 2W77A 1BY5A 1OH2Q 1MPOA 3DDRA 1XKHA 2W75A 3ADYA 1FI1A 1QKCA 1MPNA 1K28D 3QLBA 2HDFA 2WZPR
chains in the Genus database with same CATH topology
3CSNA 4EPAA 2GRXA 2O5PA 3RGNA 4RDRA 1KMPA 1WTHD 4M0NA 3V8XA 1FEPA 1FCPA 1KMOA 4AIPA 1NQFA 3V89A 3EFMA 1NQGA 2FCPA 1PNZA 2M5JA 1NQHA 1PO0A 2IAHA 2L4WA 3RGMA 2W78A 1QFFA 1BY3A 3M8BA 2Z6BD 4M0HA 4CU4A 3FHHA 3CSLA 3EZJA 1ZZVA 3GR5A 2X531 4B7OA 2W76A 1QJQA 2GUFA 3M8DA 3OV5A 2W6UA 2HDIA 4AR0A 1QFGA 2W16A 1PO3A 2D1UA 1XKWA 2A02A 2W6TA 2GSKA 1UJWA 2YSUA 1NQEA 5FOKA 4JTMA 3GS9A 4G08A 4RDTA 4AIQA 2W77A 1BY5A 3DDRA 1XKHA 2W75A 3ADYA 1FI1A 1QKCA 1K28D 3QLBA 2HDFA 2WZPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CU4 A;  1UJW A;  3FHH A;  3CSN A;  2YSU A;  3CSL A;  4EPA A;  3EZJ A;  2GRX A;  1NQE A;  5FOK A;  2FCP A;  1PNZ A;  2O5P A;  1ZZV A;  3GR5 A;  4JTM A;  2M5J A;  3RGN A;  1NQH A;  4RDR A;  4B7O A;  4G08 A;  1KMP A;  2W76 A;  4M0N A;  1PO0 A;  4RDT A;  4AIQ A;  2W77 A;  1BY5 A;  1QJQ A;  1FEP A;  2GUF A;  2IAH A;  3M8D A;  3V8X A;  1FCP A;  3DDR A;  1XKH A;  2W75 A;  2W6U A;  1KMO A;  3RGM A;  4AIP A;  1NQF A;  2W6T A;  2W78 A;  1QFF A;  1BY3 A;  2HDI A;  4AR0 A;  1QFG A;  3V89 A;  3M8B A;  2W16 A;  1FI1 A;  1PO3 A;  2D1U A;  1QKC A;  3EFM A;  4M0H A;  1XKW A;  1NQG A;  3QLB A;  2A02 A;  2GSK A;  2HDF A; 
#chains in the Genus database with same CATH topology
 3CSN A;  4EPA A;  1A0S P;  1WRU A;  1MPR A;  2GRX A;  2O5P A;  3RGN A;  4RDR A;  1KMP A;  1WTH D;  4M0N A;  3V8X A;  1FEP A;  1JBI A;  1FCP A;  1KMO A;  4AIP A;  1NQF A;  1MAL A;  1MPQ A;  3V89 A;  3EFM A;  1NQG A;  2P5Z X;  2FCP A;  1PNZ A;  2MPR A;  2M5J A;  1NQH A;  4UHV A;  1PO0 A;  2IAH A;  2L4W A;  3RGM A;  2W78 A;  1BY3 A;  1QFF A;  3M8B A;  2Z6B D;  4M0H A;  3CDD A;  4CU4 A;  3FHH A;  3CSL A;  3EZJ A;  1A0T P;  1AF6 A;  4MTK A;  1ZZV A;  3GR5 A;  2X53 1;  4B7O A;  2W76 A;  1OH2 P;  1QJQ A;  2GUF A;  3M8D A;  3OV5 A;  2W6U A;  2HDI A;  4AR0 A;  1QFG A;  2W16 A;  1PO3 A;  2D1U A;  1XKW A;  2A02 A;  2W6T A;  2GSK A;  1UJW A;  3D37 A;  2YSU A;  1MPM A;  1NQE A;  5FOK A;  4JTM A;  3GS9 A;  4G08 A;  4RDT A;  4AIQ A;  2W77 A;  1BY5 A;  1OH2 Q;  1MPO A;  3DDR A;  1XKH A;  2W75 A;  3ADY A;  1FI1 A;  1QKC A;  1MPN A;  1K28 D;  3QLB A;  2HDF A;  2WZP R; 
#chains in the Genus database with same CATH homology
 3CSN A;  4EPA A;  2GRX A;  2O5P A;  3RGN A;  4RDR A;  1KMP A;  1WTH D;  4M0N A;  3V8X A;  1FEP A;  1FCP A;  1KMO A;  4AIP A;  1NQF A;  3V89 A;  3EFM A;  1NQG A;  2FCP A;  1PNZ A;  2M5J A;  1NQH A;  1PO0 A;  2IAH A;  2L4W A;  3RGM A;  2W78 A;  1QFF A;  1BY3 A;  3M8B A;  2Z6B D;  4M0H A;  4CU4 A;  3FHH A;  3CSL A;  3EZJ A;  1ZZV A;  3GR5 A;  2X53 1;  4B7O A;  2W76 A;  1QJQ A;  2GUF A;  3M8D A;  3OV5 A;  2W6U A;  2HDI A;  4AR0 A;  1QFG A;  2W16 A;  1PO3 A;  2D1U A;  1XKW A;  2A02 A;  2W6T A;  2GSK A;  1UJW A;  2YSU A;  1NQE A;  5FOK A;  4JTM A;  3GS9 A;  4G08 A;  4RDT A;  4AIQ A;  2W77 A;  1BY5 A;  3DDR A;  1XKH A;  2W75 A;  3ADY A;  1FI1 A;  1QKC A;  1K28 D;  3QLB A;  2HDF A;  2WZP R; 
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