2W7QA

Structure of pseudomonas aeruginosa lola
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
192
structure length
192
Chain Sequence
GSIAIDDSAAVQRLTGLLNKAQTLTARFSQLTLDGSGTRLQETAGQLSLKRPGLFRWHTDAPNEQLLISNGEKVWLYDPDLEQVTIQKLDQRLTQTPALLLSGDISKISESFAITYKEGGNVVDFVLKPKTKDTLFDTLRLSFRSGKVNDMQMIDGVGQRTNILFFDVKMNEALDAKQFTFDVPPGVDVIQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords OUTER-MEMBRANE LIPOPROTEIN CARRIER PROTEIN
publication title Hydrophobic Surface Patches on Lola of Pseudomonas Aeruginosa are Essential for Lipoprotein Binding.
pubmed doi rcsb
total genus 43
structure length 192
sequence length 192
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-12-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03548 LolA Outer membrane lipoprotein carrier protein LolA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.50.20.10 Mainly Beta Clam outer membrane lipoprotein receptor (LolB), chain A Lipoprotein localisation LolA/LolB/LppX 2w7qA00
2V42A 2ZPCA 3WJTA 2W7QA 2ZPDA 3BK5A 1IWLA 1IWNA 2YZYA 4KI3A 2P4BA 4Z48A 1IWMA 2V43A 3BUUA 1UA8A 3WJUA 3KSNA 3WJVA 4MXTA 3M4WA
chains in the Genus database with same CATH superfamily
3BMZA 4QA8A 2V42A 3MH9A 4EGDA 2ZPCA 3WJTA 2W7QA 2ZPDA 3BK5A 4ZRAA 1IWLA 1IWNA 2YZYA 4KI3A 2P4BA 4Z48A 2BYOA 1IWMA 2V43A 3MHAA 4EG9A 3BUUA 2ZF4A 1UA8A 3MH8A 3WJUA 3KSNA 2ZF3A 3WJVA 4MXTA 3M4WA
chains in the Genus database with same CATH topology
2V42A 2ZPCA 3WJTA 2W7QA 2ZPDA 3BK5A 1IWLA 1IWNA 2YZYA 4KI3A 2P4BA 4Z48A 1IWMA 2V43A 3BUUA 1UA8A 3WJUA 3KSNA 3WJVA 4MXTA 3M4WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V42 A;  2ZPC A;  3WJT A;  2W7Q A;  2ZPD A;  3BK5 A;  1IWL A;  1IWN A;  2YZY A;  4KI3 A;  2P4B A;  4Z48 A;  1IWM A;  2V43 A;  3BUU A;  1UA8 A;  3WJU A;  3KSN A;  3WJV A;  4MXT A;  3M4W A; 
#chains in the Genus database with same CATH topology
 3BMZ A;  4QA8 A;  2V42 A;  3MH9 A;  4EGD A;  2ZPC A;  3WJT A;  2W7Q A;  2ZPD A;  3BK5 A;  4ZRA A;  1IWL A;  1IWN A;  2YZY A;  4KI3 A;  2P4B A;  4Z48 A;  2BYO A;  1IWM A;  2V43 A;  3MHA A;  4EG9 A;  3BUU A;  2ZF4 A;  1UA8 A;  3MH8 A;  3WJU A;  3KSN A;  2ZF3 A;  3WJV A;  4MXT A;  3M4W A; 
#chains in the Genus database with same CATH homology
 2V42 A;  2ZPC A;  3WJT A;  2W7Q A;  2ZPD A;  3BK5 A;  1IWL A;  1IWN A;  2YZY A;  4KI3 A;  2P4B A;  4Z48 A;  1IWM A;  2V43 A;  3BUU A;  1UA8 A;  3WJU A;  3KSN A;  3WJV A;  4MXT A;  3M4W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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