2X20M

Structure of peridinin-chlorophyll-protein reconstituted with chl-b
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
151
structure length
151
Chain Sequence
ADEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSVSGPNGVTSRADWDSVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVNGADAEKAYEGFLAFKDVVKKSQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Photosynthesis
molecule keywords PERIDININ-CHLOROPHYLL A-BINDING PROTEIN, CHLOROPLASTIC
publication title X-Ray Structures of the Peridinin-Chlorophyll-Protein Reconstituted with Different Chlorophylls.
pubmed doi rcsb
source organism Amphidinium carterae
total genus 62
structure length 151
sequence length 151
ec nomenclature
pdb deposition date 2010-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF02429 PCP Peridinin-chlorophyll A binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.40.10.10 Mainly Alpha Alpha solenoid Peridinin-chlorophyll Protein, Chain M Peridinin-chlorophyll A binding 2x20M00
2X1ZM 1PPRM 2C9EA 2X20M 3IIUM 2X21M 3IISM
chains in the Genus database with same CATH superfamily
2X1ZM 1PPRM 2C9EA 2X20M 3IIUM 2X21M 3IISM
chains in the Genus database with same CATH topology
2X1ZM 1PPRM 2C9EA 2X20M 3IIUM 2X21M 3IISM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X1Z M;  1PPR M;  2C9E A;  2X20 M;  3IIU M;  2X21 M;  3IIS M; 
#chains in the Genus database with same CATH topology
 2X1Z M;  1PPR M;  2C9E A;  2X20 M;  3IIU M;  2X21 M;  3IIS M; 
#chains in the Genus database with same CATH homology
 2X1Z M;  1PPR M;  2C9E A;  2X20 M;  3IIU M;  2X21 M;  3IIS M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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