2YFAA

X-ray structure of mcps ligand binding domain in complex with malate
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
236
structure length
236
Chain Sequence
GSHMGDIGQLNKDLTDLRIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords METHYL-ACCEPTING CHEMOTAXIS TRANSDUCER
publication title Evidence for Chemoreceptors with Bimodular Ligand-Binding Regions Harboring Two Signal-Binding Sites.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 118
structure length 236
sequence length 236
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfaA01
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 2yfaA02
3VA9A 2YFBA 2YFAA
chains in the Genus database with same CATH superfamily
1JQOA 4Z7HA 2CAZB 2JB1A 3AJFA 3VA9A 2JB2A 2JAEA 1U5KA 3IAS1 3DO9A 4AS3A 1YO7A 2IP6A 4OAVB 2F66B 3DA3A 2BL7A 2V1CC 4PL4A 2L1LB 2F6MB 2QSBA 2RLDA 2FU2A 2JBWA 2ZW3A 4G75A 4Q9VA 2ZRRA 3L0IA 5HGIA 4HFVA 4PL5A 2XMXA 2JB3A 2FUG1 2A2CA 3KP9A 3P23A 2QGMA 4NV5A 2MJFB 4OAUC 3LJ0A 4O1OA 3DA4A 1W3SA 3IAM1 2GSCA 2YFAA 4G76A 3Q8DA 3FVVA 3UITA 4AS2A 4GXTA 1SJ8A 4YZCA 3FBVA 2K19A 3F4MA 2RIOA 4YZDA 2KKMA 4U6RA 4I1TA 2XTQA 4HEA1 4JCVE 4O1PA 3B55A 2XTRA 2YFBA 4Z7GA 2BL8A 3FNBA 4NV2A 2ETDA 2FEFA 4DWLA 3JSBA 3LJ1A 2E8GA 2A2DA 2V6EA 2RADA 3I9V1 2HGKA 5LNK1 3SDJA 1TDPA 2P22B 4PL3A 4YZ9A 2QZGA 3LJ2A
chains in the Genus database with same CATH topology
4Z7HA 2CAZB 2JB1A 3AJFA 3VA9A 2JB2A 2JAEA 1U5KA 3IAS1 3DO9A 4AS3A 1YO7A 2IP6A 4OAVB 2F66B 3DA3A 2V1CC 4PL4A 2L1LB 2F6MB 4G75A 4Q9VA 2ZRRA 3L0IA 5HGIA 4HFVA 4PL5A 2XMXA 2JB3A 2FUG1 2A2CA 3KP9A 3P23A 4NV5A 2MJFB 4OAUC 3LJ0A 4O1OA 3DA4A 1W3SA 3IAM1 2YFAA 4G76A 3Q8DA 3UITA 4AS2A 4GXTA 1SJ8A 4YZCA 3FBVA 2K19A 3F4MA 2RIOA 4YZDA 2KKMA 4U6RA 4I1TA 2XTQA 4HEA1 4JCVE 4O1PA 2XTRA 2YFBA 4Z7GA 4NV2A 4DWLA 3JSBA 3LJ1A 2E8GA 2A2DA 2V6EA 3I9V1 5LNK1 3SDJA 2P22B 4PL3A 4YZ9A 3LJ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VA9 A;  2YFB A;  2YFA A; 
#chains in the Genus database with same CATH topology
 1JQO A;  4Z7H A;  2CAZ B;  2JB1 A;  3AJF A;  3VA9 A;  2JB2 A;  2JAE A;  1U5K A;  3IAS 1;  3DO9 A;  4AS3 A;  1YO7 A;  2IP6 A;  4OAV B;  2F66 B;  3DA3 A;  2BL7 A;  2V1C C;  4PL4 A;  2L1L B;  2F6M B;  2QSB A;  2RLD A;  2FU2 A;  2JBW A;  2ZW3 A;  4G75 A;  4Q9V A;  2ZRR A;  3L0I A;  5HGI A;  4HFV A;  4PL5 A;  2XMX A;  2JB3 A;  2FUG 1;  2A2C A;  3KP9 A;  3P23 A;  2QGM A;  4NV5 A;  2MJF B;  4OAU C;  3LJ0 A;  4O1O A;  3DA4 A;  1W3S A;  3IAM 1;  2GSC A;  2YFA A;  4G76 A;  3Q8D A;  3FVV A;  3UIT A;  4AS2 A;  4GXT A;  1SJ8 A;  4YZC A;  3FBV A;  2K19 A;  3F4M A;  2RIO A;  4YZD A;  2KKM A;  4U6R A;  4I1T A;  2XTQ A;  4HEA 1;  4JCV E;  4O1P A;  3B55 A;  2XTR A;  2YFB A;  4Z7G A;  2BL8 A;  3FNB A;  4NV2 A;  2ETD A;  2FEF A;  4DWL A;  3JSB A;  3LJ1 A;  2E8G A;  2A2D A;  2V6E A;  2RAD A;  3I9V 1;  2HGK A;  5LNK 1;  3SDJ A;  1TDP A;  2P22 B;  4PL3 A;  4YZ9 A;  2QZG A;  3LJ2 A; 
#chains in the Genus database with same CATH homology
 4Z7H A;  2CAZ B;  2JB1 A;  3AJF A;  3VA9 A;  2JB2 A;  2JAE A;  1U5K A;  3IAS 1;  3DO9 A;  4AS3 A;  1YO7 A;  2IP6 A;  4OAV B;  2F66 B;  3DA3 A;  2V1C C;  4PL4 A;  2L1L B;  2F6M B;  4G75 A;  4Q9V A;  2ZRR A;  3L0I A;  5HGI A;  4HFV A;  4PL5 A;  2XMX A;  2JB3 A;  2FUG 1;  2A2C A;  3KP9 A;  3P23 A;  4NV5 A;  2MJF B;  4OAU C;  3LJ0 A;  4O1O A;  3DA4 A;  1W3S A;  3IAM 1;  2YFA A;  4G76 A;  3Q8D A;  3UIT A;  4AS2 A;  4GXT A;  1SJ8 A;  4YZC A;  3FBV A;  2K19 A;  3F4M A;  2RIO A;  4YZD A;  2KKM A;  4U6R A;  4I1T A;  2XTQ A;  4HEA 1;  4JCV E;  4O1P A;  2XTR A;  2YFB A;  4Z7G A;  4NV2 A;  4DWL A;  3JSB A;  3LJ1 A;  2E8G A;  2A2D A;  2V6E A;  3I9V 1;  5LNK 1;  3SDJ A;  2P22 B;  4PL3 A;  4YZ9 A;  3LJ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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