The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
34
|
sequence length |
128
|
structure length |
128
|
Chain Sequence |
LDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNSKKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQPPALCWAACMGTPGCDLYTFQGMTCKLYSQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
pubmed doi rcsb |
| molecule tags |
Sugar binding protein
|
| molecule keywords |
MICRONEME ANTIGEN L2
|
| total genus |
34
|
| structure length |
128
|
| sequence length |
128
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-05-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00024 | PAN_1 | PAN domain |
| A | PF14295 | PAN_4 | PAN domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Defensin A-like | Defensin A-like | ||
| Alpha Beta | 3-Layer(bba) Sandwich | Hepatocyte Growth Factor | Hepatocyte Growth Factor |
#chains in the Genus database with same CATH superfamily 5CSQ A; 3ZWZ A; 4UAO A; 1Z40 A; 1NK1 A; 2X2Z A; 5CT3 A; 3HMS A; 5CP9 A; 2Q8A A; 3HN4 A; 2LL4 M; 3MKP A; 1GMO A; 3HMR A; 1W81 A; 5EOK A; 1BHT A; 5CS1 A; 4R1B A; 5EOD A; 2YIL A; 3SRJ A; 1I8N A; 4R19 A; 1YXE A; 4DUR A; 1HKY A; 3SRI A; 5CS5 A; 2Z8W A; 1GP9 A; 3ZLE A; 2F83 A; 5COE A; 2J8L A; 2QJ2 A; 2J8J A; 4IUA A; 4R1A A; 5CT1 A; 2YIP A; 5I25 A; 4Z0E A; 1W8K A; 4APM A; 4Z09 A; 2QJ4 A; 4Z0D A; 4A5T S; 2Y8R A; 4R1C A; 3SP8 A; 1GMN A; 5CT2 A; 5CS9 A; 2YIO A; 3HMT A; 2Z8V A; 2Q8B A; 2HGF A; 4APL A; 2K13 X; 2LL3 A; 4UV6 A; 4Z0F A; 5CS3 A; #chains in the Genus database with same CATH topology 4UJ0 A; 1GMO A; 4FSV A; 1BHT A; 1GPS A; 1OMY A; 5CS1 A; 4R1B A; 1KV0 A; 1BUP A; 1L4V A; 2QWR A; 1ZVG A; 5AQK A; 1P00 A; 2E2F A; 5I25 A; 1NGI A; 2D56 A; 5AQX A; 2LT8 A; 1LQQ A; 2KYQ A; 2E0H A; 1OZZ A; 5EVZ A; 5CS3 A; 1SNB A; 1FH3 A; 3C7N B; 3HSC A; 3KC6 A; 1HKY A; 3QI7 A; 2GL1 A; 2E3F A; 1I2V A; 1NGG A; 5AQU A; 5AQH A; 2Y8R A; 1C55 A; 2Q8B A; 3A8Y A; 1NGH A; 5AQI A; 2BRZ A; 2KSK A; 1T0Z A; 2G2K A; 2LN8 A; 3HN4 A; 2LL4 M; 2ASC A; 4H5N A; 4H5R A; 1WWN A; 5BN8 A; 2E88 A; 1YXE A; 3SRI A; 4AB0 A; 2N2Q A; 2J8L A; 4UAD E; 3FZH A; 1PTX A; 5AR0 A; 1BA0 A; 5BN9 A; 1NGD A; 1NGA A; 3QFP A; 1I6G A; 2JDQ D; 3LDP A; 5AQN A; 2BUP A; 2QWM A; 2YEO A; 3M3Z A; 4FL9 A; 4R19 A; 5CS5 A; 5FPE A; 3ZLE A; 2J8J A; 4R1A A; 4Z09 A; 5AQS A; 1BRZ A; 1GMN A; 1JZB A; 1PX9 A; 1JKZ A; 2LL3 A; 3LDL A; 1NRA A; 3HMS A; 5AQY A; 1NRB A; 1SEG A; 4KBO A; 2KL5 A; 2NY9 X; 4APM A; 3E7U X; 2HGF A; 1S3X A; 4Z0F A; 2GMO A; 1JXC A; 5FPN A; 3MKP A; 1T7E A; 5AQG A; 2QWP A; 1WT7 A; 3BK3 C; 5BPL A; 2N2R A; 2YC1 C; 4Z0E A; 1NGE A; 2KBJ A; 3HMT A; 4APL A; 2NY8 X; 3LDN A; 1ZYV A; 1P0A A; 1NK1 A; 2KBK A; 5CP9 A; 3D2E A; 4YIZ A; 5FPD A; 1QQM A; 1LQI A; 4KYP A; 1KAX A; 1GP9 A; 3E7R L; 1SN1 A; 5CY0 A; 3FZK A; 3KVG A; 3FZL A; 1XRS B; 1QQO A; 4R1C A; 5CS9 A; 5AQP A; 2B3C A; 5AQV A; 4GNI A; 1SN4 A; 2X2Z A; 1PE4 A; 1T7A A; 1I6F A; 3KOW A; 3HMR A; 3SF4 D; 2B68 A; 2VY6 A; 5F1X A; 3GKU A; 2K35 A; 2QXL A; 1BMR A; 2Z8W A; 3KOZ A; 5EXW A; 1NE5 A; 2LR3 A; 5CT1 A; 2MBK A; 1YUW A; 1JZA A; 2SN3 A; 3GL1 A; 1ZYW A; 2LI7 A; 2LJM A; 3D2F A; 3FZM A; 3KOY A; 2QWO A; 1POI A; 2A7T A; 2LKB A; 5AQJ A; 3QFU A; 4YIV A; 3SRJ A; 1KAY A; 3QML A; 2QWN A; 2KGQ A; 1ATS A; 2KBH A; 2YIP A; 5AQR A; 1LQH A; 1C56 A; 1NGJ A; 3D2E B; 1ZFU A; 2K13 X; 4UV6 A; 1CHZ A; 1Z40 A; 2E8A A; 3CW4 A; 4CQK A; 2F83 A; 5F2R A; 5EX5 A; 2YBR C; 3GDQ A; 1NPI A; 3KOX A; 3R2V A; 2MZ0 A; 1T1T A; 3KP1 A; 5FPM A; 4AEI A; 3I33 A; 1GPT A; 1HJO A; 1TI5 A; 4UAF E; 1QQN A; 3L56 A; 1I8N A; 1MYN A; 4V1D C; 4H5W A; 2ATB A; 3D2F B; 2KJA A; 1BA1 A; 4IO8 A; 5COE A; 3FE1 A; 2I61 A; 2Q8A A; 2N69 A; 3PSM A; 5AQZ A; 2YIL A; 1BK8 A; 2KHO A; 2V7Z A; 1BCG A; 1WMT A; 1VNB A; 5KK4 A; 4HWI A; 3SP8 A; 2YIO A; 5EY4 A; 3LDO A; 1AYJ A; 3L6Q A; 1MR4 A; 2N66 A; 1ZVE A; 5AQM A; 2LJ7 A; 1DJT A; 1CN2 A; 5BPM A; 1NGF A; 4HHF A; 5AQF A; 4H5T A; 2QWQ A; 5F0X A; 1W8K A; 2QW9 A; 5CT2 A; 2Z8V A; 1N4N A; 3KP0 A; 5AQT A; 1ZU3 A; 2QWL A; 4AAZ A; 2LY6 A; 1ICA A; 2LY5 A; 1NGC A; 5EOK A; 3FZF A; 1HX1 A; 4H5V A; 1HPM A; 2M8B B; 3AY9 A; 5AQQ A; 3IUC A; 4A5T S; 1ATR A; 1AHO A; 1VNA A; 1T7B A; 1NH5 A; 3ZWZ A; 3ATU A; 4UAO A; 5CT3 A; 1I2U A; 5AQL A; 2E3G A; 1DQ7 A; 1B3C A; 5AQO A; 3CQX A; 3C7N A; 4Z0D A; 3JXU A; 1UGL A; 3L4I A; 2QJ2 A; 1B7D A; 4HE7 A; 5CSQ A; 3LDQ A; 5AQW A; 1DKG D; 5BPN A; 1K8B A; 1W81 A; 3ATV A; 2MN5 A; 1KAZ A; 3KHW A; 5EOD A; 4DUR A; 1ZUT A; 1NGB A; 4IUA A; 2QJ4 A; 2KPY A; 4UAE F; #chains in the Genus database with same CATH homology 3L6Q A; 3D2F A; 3FZM A; 3LDL A; 3HMS A; 2QWO A; 5AQM A; 1POI A; 5AQY A; 1GMO A; 4FSV A; 1BHT A; 5AQJ A; 5CS1 A; 3QFU A; 4KBO A; 4R1B A; 1BUP A; 5BPM A; 4YIV A; 1NGF A; 3SRJ A; 1KAY A; 2QWR A; 2KL5 A; 3QML A; 5AQF A; 5AQK A; 2QWN A; 2E2F A; 4H5T A; 2QWQ A; 5F0X A; 1ATS A; 5I25 A; 2YIP A; 1W8K A; 1NGI A; 2D56 A; 4APM A; 5AQX A; 5AQR A; 2QW9 A; 5CT2 A; 1NGJ A; 2Z8V A; 2HGF A; 3D2E B; 5AQT A; 2K13 X; 4UV6 A; 1S3X A; 5EVZ A; 5CS3 A; 4Z0F A; 2QWL A; 2GMO A; 1Z40 A; 5FPN A; 1NGC A; 3MKP A; 5EOK A; 2E8A A; 3C7N B; 3FZF A; 3HSC A; 5AQG A; 1HX1 A; 3KC6 A; 2QWP A; 3CW4 A; 3BK3 C; 4H5V A; 1HPM A; 1HKY A; 5BPL A; 3QI7 A; 2F83 A; 3AY9 A; 5AQQ A; 5F2R A; 4Z0E A; 1NGE A; 1NGG A; 5AQU A; 3IUC A; 5EX5 A; 5AQH A; 2Y8R A; 4A5T S; 3GDQ A; 1ATR A; 3HMT A; 2Q8B A; 4APL A; 3LDN A; 3A8Y A; 3R2V A; 1NGH A; 5FPM A; 3ZWZ A; 3ATU A; 5AQI A; 4UAO A; 1NK1 A; 5CT3 A; 3I33 A; 2LN8 A; 1HJO A; 5CP9 A; 3HN4 A; 2LL4 M; 3D2E A; 4UAF E; 4H5N A; 5AQL A; 1QQM A; 5FPD A; 4H5R A; 4YIZ A; 1QQN A; 5AQO A; 3L56 A; 5BN8 A; 2E88 A; 1I8N A; 1YXE A; 3SRI A; 4H5W A; 1KAX A; 1GP9 A; 3CQX A; 2J8L A; 4UAD E; 3D2F B; 3FZK A; 3FZH A; 3KVG A; 5AR0 A; 3C7N A; 3FZL A; 1BA1 A; 1BA0 A; 1QQO A; 4Z0D A; 3JXU A; 4R1C A; 5BN9 A; 1NGD A; 5CS9 A; 1NGA A; 3L4I A; 3QFP A; 4IO8 A; 5AQP A; 5AQV A; 2QJ2 A; 5COE A; 4GNI A; 5CSQ A; 2JDQ D; 3LDQ A; 2X2Z A; 3LDP A; 5AQW A; 1DKG D; 3FE1 A; 5BPN A; 2Q8A A; 5AQN A; 2BUP A; 2QWM A; 3HMR A; 1W81 A; 3SF4 D; 3M3Z A; 4FL9 A; 3ATV A; 2MN5 A; 2VY6 A; 1KAZ A; 3KHW A; 5AQZ A; 5F1X A; 5EOD A; 2YIL A; 2K35 A; 2QXL A; 4R19 A; 4DUR A; 5CS5 A; 2KHO A; 5FPE A; 2Z8W A; 3ZLE A; 5EXW A; 2V7Z A; 2J8J A; 1NGB A; 4IUA A; 4R1A A; 2MBK A; 5CT1 A; 1YUW A; 4Z09 A; 5AQS A; 2QJ4 A; 4HWI A; 4UAE F; 3SP8 A; 1GMN A; 2YIO A; 3GL1 A; 5EY4 A; 2LL3 A; 3LDO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
