2Z4EC

Crystal structure of d-dimer from human fibrin complexed with gly-his-arg-pro-tyr-amide
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
292
structure length
292
Chain Sequence
THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKIIPFNRLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords Fibrinogen alpha chain
publication title Probing the beta-chain hole of fibrinogen with synthetic peptides that differ at their amino termini
pubmed doi rcsb
total genus 89
structure length 292
sequence length 292
chains with identical sequence F
ec nomenclature
pdb deposition date 2007-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2z4eC01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2z4eC02
1FZAC 2H43B 2HLOB 2J60A 1FZBC 1N86B 2J3GA 4ZFGA 1FICA 1FZAB 3BVHC 2HODC 1FZEC 2GY7A 1FZBB 4M7FA 4JZCA 2HODB 1FZEB 1RE4B 2J2PA 2J1GA 3E1IC 1FIBA 3GHGC 4NYTA 2Q9IC 3E1IB 2OYIC 1LTJC 3H32C 3BVHB 1FZDA 3FIBA 1M1JC 1RF0C 2XNXC 2OYIB 1LTJB 2HPCC 2D39A 1LWUC 3H32B 2J3FA 2J61B 1Z3SA 1M1JB 1RF0B 2XNXB 3HUSC 1LT9C 4JYOX 1LWUB 2J3UA 2J0GA 1N73C 1FZGC 1RE3C 2WNPF 1FIDA 3HUSB 4EPUA 1LT9B 2Z4EC 1N73B 2J0HA 1RF1C 2H43C 1FZGB 1RE3B 1FZCC 2J61A 2Q9IB 4M7HA 4R9TA 2JHHC 2Z4EB 1RF1B 1FZCB 2J64A 2JHMF 2J3FD 2HPCB 2FIBA 2J3OA 1FZFC 2FFDC 1RE4C 1Z3UA 2J5ZA 2OYHC 1FZFB 2FFDB 2JHIF 2HLOC 1JC9A 1N86C 4R9JA 2JHKF 2OYHB 2JHLF 2J0YA
chains in the Genus database with same CATH superfamily
1FZAC 2H43B 2HLOB 2J60A 1FZBC 1N86B 2J3GA 4ZFGA 1FICA 1FZAB 3BVHC 2HODC 1FZEC 2GY7A 1FZBB 4M7FA 4JZCA 2HODB 1FZEB 1RE4B 2J2PA 2J1GA 3E1IC 1FIBA 3GHGC 4NYTA 2Q9IC 3E1IB 3GHGB 2OYIC 1LTJC 3H32C 3BVHB 1FZDA 3FIBA 1M1JC 1RF0C 2XNXC 2OYIB 1LTJB 2HPCC 2D39A 1LWUC 3H32B 2J3FA 2J61B 1Z3SA 1M1JB 1RF0B 2XNXB 3HUSC 1LT9C 4JYOX 1LWUB 2J3UA 2J0GA 1N73C 1FZGC 1RE3C 2WNPF 1FIDA 3HUSB 4EPUA 1LT9B 2Z4EC 1N73B 2J0HA 1RF1C 2H43C 1FZGB 1RE3B 1FZCC 2J61A 2Q9IB 4M7HA 4R9TA 2JHHC 2Z4EB 1RF1B 1FZCB 2J64A 2JHMF 2J3FD 2HPCB 2FIBA 2J3OA 1FZFC 2FFDC 1RE4C 1Z3UA 2J5ZA 2OYHC 1FZFB 2FFDB 2JHIF 2HLOC 1JC9A 1N86C 4R9JA 2JHKF 2OYHB 2JHLF 2J0YA
chains in the Genus database with same CATH topology
1FZAC 2H43B 2HLOB 2J60A 1FZBC 1N86B 2J3GA 4ZFGA 1FICA 1FZAB 3BVHC 2HODC 1FZEC 2GY7A 1FZBB 4M7FA 4JZCA 2HODB 1FZEB 1RE4B 2J2PA 2J1GA 3E1IC 1FIBA 3GHGC 4NYTA 2Q9IC 3E1IB 2OYIC 1LTJC 3H32C 3BVHB 1FZDA 3FIBA 1M1JC 1RF0C 2XNXC 2OYIB 1LTJB 2HPCC 2D39A 1LWUC 3H32B 2J3FA 2J61B 1Z3SA 1M1JB 1RF0B 2XNXB 3HUSC 1LT9C 4JYOX 1LWUB 2J3UA 2J0GA 1N73C 1FZGC 1RE3C 2WNPF 1FIDA 3HUSB 4EPUA 1LT9B 2Z4EC 1N73B 2J0HA 1RF1C 2H43C 1FZGB 1RE3B 1FZCC 2J61A 2Q9IB 4M7HA 4R9TA 2JHHC 2Z4EB 1RF1B 1FZCB 2J64A 2JHMF 2J3FD 2HPCB 2FIBA 2J3OA 1FZFC 2FFDC 1RE4C 1Z3UA 2J5ZA 2OYHC 1FZFB 2FFDB 2JHIF 2HLOC 1JC9A 1N86C 4R9JA 2JHKF 2OYHB 2JHLF 2J0YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZA C;  2H43 B;  2HLO B;  2J60 A;  1FZB C;  1N86 B;  2J3G A;  4ZFG A;  1FIC A;  1FZA B;  3BVH C;  2HOD C;  1FZE C;  2GY7 A;  1FZB B;  4M7F A;  4JZC A;  2HOD B;  1FZE B;  1RE4 B;  2J2P A;  2J1G A;  3E1I C;  1FIB A;  3GHG C;  4NYT A;  2Q9I C;  3E1I B;  2OYI C;  1LTJ C;  3H32 C;  3BVH B;  1FZD A;  3FIB A;  1M1J C;  1RF0 C;  2XNX C;  2OYI B;  1LTJ B;  2HPC C;  2D39 A;  1LWU C;  3H32 B;  2J3F A;  2J61 B;  1Z3S A;  1M1J B;  1RF0 B;  2XNX B;  3HUS C;  1LT9 C;  4JYO X;  1LWU B;  2J3U A;  2J0G A;  1N73 C;  1FZG C;  1RE3 C;  2WNP F;  1FID A;  3HUS B;  4EPU A;  1LT9 B;  2Z4E C;  1N73 B;  2J0H A;  1RF1 C;  2H43 C;  1FZG B;  1RE3 B;  1FZC C;  2J61 A;  2Q9I B;  4M7H A;  4R9T A;  2JHH C;  2Z4E B;  1RF1 B;  1FZC B;  2J64 A;  2JHM F;  2J3F D;  2HPC B;  2FIB A;  2J3O A;  1FZF C;  2FFD C;  1RE4 C;  1Z3U A;  2J5Z A;  2OYH C;  1FZF B;  2FFD B;  2JHI F;  2HLO C;  1JC9 A;  1N86 C;  4R9J A;  2JHK F;  2OYH B;  2JHL F;  2J0Y A; 
#chains in the Genus database with same CATH topology
 1FZA C;  2H43 B;  2HLO B;  2J60 A;  1FZB C;  1N86 B;  2J3G A;  4ZFG A;  1FIC A;  1FZA B;  3BVH C;  2HOD C;  1FZE C;  2GY7 A;  1FZB B;  4M7F A;  4JZC A;  2HOD B;  1FZE B;  1RE4 B;  2J2P A;  2J1G A;  3E1I C;  1FIB A;  3GHG C;  4NYT A;  2Q9I C;  3E1I B;  3GHG B;  2OYI C;  1LTJ C;  3H32 C;  3BVH B;  1FZD A;  3FIB A;  1M1J C;  1RF0 C;  2XNX C;  2OYI B;  1LTJ B;  2HPC C;  2D39 A;  1LWU C;  3H32 B;  2J3F A;  2J61 B;  1Z3S A;  1M1J B;  1RF0 B;  2XNX B;  3HUS C;  1LT9 C;  4JYO X;  1LWU B;  2J3U A;  2J0G A;  1N73 C;  1FZG C;  1RE3 C;  2WNP F;  1FID A;  3HUS B;  4EPU A;  1LT9 B;  2Z4E C;  1N73 B;  2J0H A;  1RF1 C;  2H43 C;  1FZG B;  1RE3 B;  1FZC C;  2J61 A;  2Q9I B;  4M7H A;  4R9T A;  2JHH C;  2Z4E B;  1RF1 B;  1FZC B;  2J64 A;  2JHM F;  2J3F D;  2HPC B;  2FIB A;  2J3O A;  1FZF C;  2FFD C;  1RE4 C;  1Z3U A;  2J5Z A;  2OYH C;  1FZF B;  2FFD B;  2JHI F;  2HLO C;  1JC9 A;  1N86 C;  4R9J A;  2JHK F;  2OYH B;  2JHL F;  2J0Y A; 
#chains in the Genus database with same CATH homology
 1FZA C;  2H43 B;  2HLO B;  2J60 A;  1FZB C;  1N86 B;  2J3G A;  4ZFG A;  1FIC A;  1FZA B;  3BVH C;  2HOD C;  1FZE C;  2GY7 A;  1FZB B;  4M7F A;  4JZC A;  2HOD B;  1FZE B;  1RE4 B;  2J2P A;  2J1G A;  3E1I C;  1FIB A;  3GHG C;  4NYT A;  2Q9I C;  3E1I B;  2OYI C;  1LTJ C;  3H32 C;  3BVH B;  1FZD A;  3FIB A;  1M1J C;  1RF0 C;  2XNX C;  2OYI B;  1LTJ B;  2HPC C;  2D39 A;  1LWU C;  3H32 B;  2J3F A;  2J61 B;  1Z3S A;  1M1J B;  1RF0 B;  2XNX B;  3HUS C;  1LT9 C;  4JYO X;  1LWU B;  2J3U A;  2J0G A;  1N73 C;  1FZG C;  1RE3 C;  2WNP F;  1FID A;  3HUS B;  4EPU A;  1LT9 B;  2Z4E C;  1N73 B;  2J0H A;  1RF1 C;  2H43 C;  1FZG B;  1RE3 B;  1FZC C;  2J61 A;  2Q9I B;  4M7H A;  4R9T A;  2JHH C;  2Z4E B;  1RF1 B;  1FZC B;  2J64 A;  2JHM F;  2J3F D;  2HPC B;  2FIB A;  2J3O A;  1FZF C;  2FFD C;  1RE4 C;  1Z3U A;  2J5Z A;  2OYH C;  1FZF B;  2FFD B;  2JHI F;  2HLO C;  1JC9 A;  1N86 C;  4R9J A;  2JHK F;  2OYH B;  2JHL F;  2J0Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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