2Z4EC

Crystal structure of d-dimer from human fibrin complexed with gly-his-arg-pro-tyr-amide
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
292
structure length
292
Chain Sequence
THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKIIPFNRLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords Fibrinogen alpha chain
publication title Probing the beta-chain hole of fibrinogen with synthetic peptides that differ at their amino termini
pubmed doi rcsb
total genus 89
structure length 292
sequence length 292
chains with identical sequence F
ec nomenclature
pdb deposition date 2007-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00147 Fibrinogen_C Fibrinogen beta and gamma chains, C-terminal globular domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.215.10 Alpha Beta Alpha-Beta Complex Gamma Fibrinogen; Chain A, domain 1 Gamma Fibrinogen, chain A, domain 1 2z4eC01
4.10.530.10 Few Secondary Structures Irregular Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 2z4eC02
4M7HA 2Q9IC 4R9TA 1LTJB 3H32B 1LT9B 1Z3UA 1FIBA 2J5ZA 1FZFB 2OYIB 1LWUB 2FFDB 1JC9A 1Z3SA 4JYOX 2OYHC 2J3FA 2J0GA 1N86B 1FZEB 2J3OA 2J3FD 2D39A 4EPUA 1RF0B 2Z4EB 4M7FA 1RE4C 2WNPF 1M1JB 2J2PA 3E1IB 2HODC 1FZAC 1FZGB 3BVHC 2HLOC 1RF1C 1N73B 3FIBA 2HPCC 2Q9IB 2JHKF 2J64A 1FZBB 2J61B 1LT9C 2J61A 2OYHB 1RE3B 2JHIF 2JHLF 1FZDA 2JHHC 2J3GA 1FZCC 1FIDA 2H43B 4ZFGA 2HODB 1FZAB 3HUSC 3BVHB 2HLOB 1RF1B 2XNXC 2J3UA 1LTJC 3H32C 2HPCB 1N73C 2J0HA 4JZCA 1FZFC 2OYIC 1LWUC 2FFDC 2J60A 2FIBA 1N86C 1FZBC 1FZEC 1RE4B 2J0YA 4NYTA 2Z4EC 1RF0C 2J1GA 1RE3C 2GY7A 3GHGC 1M1JC 1FZCB 4R9JA 2JHMF 3E1IC 1FZGC 1FICA 2H43C 3HUSB 2XNXB
chains in the Genus database with same CATH superfamily
4M7HA 2Q9IC 4R9TA 1LTJB 3H32B 1LT9B 1Z3UA 1FIBA 2J5ZA 1FZFB 2OYIB 1LWUB 2FFDB 1JC9A 1Z3SA 4JYOX 2OYHC 2J3FA 2J0GA 1N86B 1FZEB 2J3OA 2J3FD 2D39A 4EPUA 1RF0B 2Z4EB 4M7FA 1RE4C 2WNPF 1M1JB 2J2PA 3E1IB 2HODC 1FZAC 1FZGB 3BVHC 2HLOC 1RF1C 1N73B 3FIBA 2HPCC 2Q9IB 2JHKF 2J64A 1FZBB 2J61B 1LT9C 2J61A 2OYHB 1RE3B 3GHGB 2JHIF 2JHLF 1FZDA 2JHHC 2J3GA 1FZCC 1FIDA 2H43B 4ZFGA 2HODB 1FZAB 3HUSC 3BVHB 2HLOB 1RF1B 2XNXC 2J3UA 1LTJC 3H32C 2HPCB 1N73C 2J0HA 4JZCA 1FZFC 2OYIC 1LWUC 2FFDC 2J60A 2FIBA 1N86C 1FZBC 1FZEC 1RE4B 2J0YA 4NYTA 2Z4EC 1RF0C 2J1GA 1RE3C 2GY7A 3GHGC 1M1JC 1FZCB 4R9JA 2JHMF 3E1IC 1FZGC 1FICA 2H43C 3HUSB 2XNXB
chains in the Genus database with same CATH topology
4M7HA 2Q9IC 4R9TA 1LTJB 3H32B 1LT9B 1Z3UA 1FIBA 2J5ZA 1FZFB 2OYIB 1LWUB 2FFDB 1JC9A 1Z3SA 4JYOX 2OYHC 2J3FA 2J0GA 1N86B 1FZEB 2J3OA 2J3FD 2D39A 4EPUA 1RF0B 2Z4EB 4M7FA 1RE4C 2WNPF 1M1JB 2J2PA 3E1IB 2HODC 1FZAC 1FZGB 3BVHC 2HLOC 1RF1C 1N73B 3FIBA 2HPCC 2Q9IB 2JHKF 2J64A 1FZBB 2J61B 1LT9C 2J61A 2OYHB 1RE3B 2JHIF 2JHLF 1FZDA 2JHHC 2J3GA 1FZCC 1FIDA 2H43B 4ZFGA 2HODB 1FZAB 3HUSC 3BVHB 2HLOB 1RF1B 2XNXC 2J3UA 1LTJC 3H32C 2HPCB 1N73C 2J0HA 4JZCA 1FZFC 2OYIC 1LWUC 2FFDC 2J60A 2FIBA 1N86C 1FZBC 1FZEC 1RE4B 2J0YA 4NYTA 2Z4EC 1RF0C 2J1GA 1RE3C 2GY7A 3GHGC 1M1JC 1FZCB 4R9JA 2JHMF 3E1IC 1FZGC 1FICA 2H43C 3HUSB 2XNXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M7H A;  2Q9I C;  4R9T A;  1LTJ B;  3H32 B;  1LT9 B;  1Z3U A;  1FIB A;  2J5Z A;  1FZF B;  2OYI B;  1LWU B;  2FFD B;  1JC9 A;  1Z3S A;  4JYO X;  2OYH C;  2J3F A;  2J0G A;  1N86 B;  1FZE B;  2J3O A;  2J3F D;  2D39 A;  4EPU A;  1RF0 B;  2Z4E B;  4M7F A;  1RE4 C;  2WNP F;  1M1J B;  2J2P A;  3E1I B;  2HOD C;  1FZA C;  1FZG B;  3BVH C;  2HLO C;  1RF1 C;  1N73 B;  3FIB A;  2HPC C;  2Q9I B;  2JHK F;  2J64 A;  1FZB B;  2J61 B;  1LT9 C;  2J61 A;  2OYH B;  1RE3 B;  2JHI F;  2JHL F;  1FZD A;  2JHH C;  2J3G A;  1FZC C;  1FID A;  2H43 B;  4ZFG A;  2HOD B;  1FZA B;  3HUS C;  3BVH B;  2HLO B;  1RF1 B;  2XNX C;  2J3U A;  1LTJ C;  3H32 C;  2HPC B;  1N73 C;  2J0H A;  4JZC A;  1FZF C;  2OYI C;  1LWU C;  2FFD C;  2J60 A;  2FIB A;  1N86 C;  1FZB C;  1FZE C;  1RE4 B;  2J0Y A;  4NYT A;  2Z4E C;  1RF0 C;  2J1G A;  1RE3 C;  2GY7 A;  3GHG C;  1M1J C;  1FZC B;  4R9J A;  2JHM F;  3E1I C;  1FZG C;  1FIC A;  2H43 C;  3HUS B;  2XNX B; 
#chains in the Genus database with same CATH topology
 4M7H A;  2Q9I C;  4R9T A;  1LTJ B;  3H32 B;  1LT9 B;  1Z3U A;  1FIB A;  2J5Z A;  1FZF B;  2OYI B;  1LWU B;  2FFD B;  1JC9 A;  1Z3S A;  4JYO X;  2OYH C;  2J3F A;  2J0G A;  1N86 B;  1FZE B;  2J3O A;  2J3F D;  2D39 A;  4EPU A;  1RF0 B;  2Z4E B;  4M7F A;  1RE4 C;  2WNP F;  1M1J B;  2J2P A;  3E1I B;  2HOD C;  1FZA C;  1FZG B;  3BVH C;  2HLO C;  1RF1 C;  1N73 B;  3FIB A;  2HPC C;  2Q9I B;  2JHK F;  2J64 A;  1FZB B;  2J61 B;  1LT9 C;  2J61 A;  2OYH B;  1RE3 B;  3GHG B;  2JHI F;  2JHL F;  1FZD A;  2JHH C;  2J3G A;  1FZC C;  1FID A;  2H43 B;  4ZFG A;  2HOD B;  1FZA B;  3HUS C;  3BVH B;  2HLO B;  1RF1 B;  2XNX C;  2J3U A;  1LTJ C;  3H32 C;  2HPC B;  1N73 C;  2J0H A;  4JZC A;  1FZF C;  2OYI C;  1LWU C;  2FFD C;  2J60 A;  2FIB A;  1N86 C;  1FZB C;  1FZE C;  1RE4 B;  2J0Y A;  4NYT A;  2Z4E C;  1RF0 C;  2J1G A;  1RE3 C;  2GY7 A;  3GHG C;  1M1J C;  1FZC B;  4R9J A;  2JHM F;  3E1I C;  1FZG C;  1FIC A;  2H43 C;  3HUS B;  2XNX B; 
#chains in the Genus database with same CATH homology
 4M7H A;  2Q9I C;  4R9T A;  1LTJ B;  3H32 B;  1LT9 B;  1Z3U A;  1FIB A;  2J5Z A;  1FZF B;  2OYI B;  1LWU B;  2FFD B;  1JC9 A;  1Z3S A;  4JYO X;  2OYH C;  2J3F A;  2J0G A;  1N86 B;  1FZE B;  2J3O A;  2J3F D;  2D39 A;  4EPU A;  1RF0 B;  2Z4E B;  4M7F A;  1RE4 C;  2WNP F;  1M1J B;  2J2P A;  3E1I B;  2HOD C;  1FZA C;  1FZG B;  3BVH C;  2HLO C;  1RF1 C;  1N73 B;  3FIB A;  2HPC C;  2Q9I B;  2JHK F;  2J64 A;  1FZB B;  2J61 B;  1LT9 C;  2J61 A;  2OYH B;  1RE3 B;  2JHI F;  2JHL F;  1FZD A;  2JHH C;  2J3G A;  1FZC C;  1FID A;  2H43 B;  4ZFG A;  2HOD B;  1FZA B;  3HUS C;  3BVH B;  2HLO B;  1RF1 B;  2XNX C;  2J3U A;  1LTJ C;  3H32 C;  2HPC B;  1N73 C;  2J0H A;  4JZC A;  1FZF C;  2OYI C;  1LWU C;  2FFD C;  2J60 A;  2FIB A;  1N86 C;  1FZB C;  1FZE C;  1RE4 B;  2J0Y A;  4NYT A;  2Z4E C;  1RF0 C;  2J1G A;  1RE3 C;  2GY7 A;  3GHG C;  1M1J C;  1FZC B;  4R9J A;  2JHM F;  3E1I C;  1FZG C;  1FIC A;  2H43 C;  3HUS B;  2XNX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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