2ZPCA

Crystal structure of the r43l mutant of lola in the closed form
Total Genus 47
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
183
structure length
183
Chain Sequence
DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKLPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Protein transport
molecule keywords Outer-membrane lipoprotein carrier protein
publication title Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
pubmed doi rcsb
source organism Escherichia coli
total genus 47
structure length 183
sequence length 183
ec nomenclature
pdb deposition date 2008-07-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03548 LolA Outer membrane lipoprotein carrier protein LolA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.50.20.10 Mainly Beta Clam outer membrane lipoprotein receptor (LolB), chain A Lipoprotein localisation LolA/LolB/LppX 2zpcA00
4KI3A 3M4WA 1UA8A 1IWLA 3WJTA 3BUUA 2V43A 4Z48A 1IWNA 2V42A 2W7QA 3WJUA 3WJVA 4MXTA 2P4BA 2YZYA 1IWMA 3KSNA 3BK5A 2ZPDA 2ZPCA
chains in the Genus database with same CATH superfamily
4EG9A 3MHAA 2ZF4A 4KI3A 3MH9A 3M4WA 1UA8A 3MH8A 1IWLA 3WJTA 3BUUA 4ZRAA 2V43A 4Z48A 1IWNA 2V42A 2W7QA 3WJUA 4QA8A 3WJVA 3BMZA 2BYOA 2ZF3A 4MXTA 2P4BA 2YZYA 1IWMA 3KSNA 4EGDA 3BK5A 2ZPDA 2ZPCA
chains in the Genus database with same CATH topology
4KI3A 3M4WA 1UA8A 1IWLA 3WJTA 3BUUA 2V43A 4Z48A 1IWNA 2V42A 2W7QA 3WJUA 3WJVA 4MXTA 2P4BA 2YZYA 1IWMA 3KSNA 3BK5A 2ZPDA 2ZPCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KI3 A;  3M4W A;  1UA8 A;  1IWL A;  3WJT A;  3BUU A;  2V43 A;  4Z48 A;  1IWN A;  2V42 A;  2W7Q A;  3WJU A;  3WJV A;  4MXT A;  2P4B A;  2YZY A;  1IWM A;  3KSN A;  3BK5 A;  2ZPD A;  2ZPC A; 
#chains in the Genus database with same CATH topology
 4EG9 A;  3MHA A;  2ZF4 A;  4KI3 A;  3MH9 A;  3M4W A;  1UA8 A;  3MH8 A;  1IWL A;  3WJT A;  3BUU A;  4ZRA A;  2V43 A;  4Z48 A;  1IWN A;  2V42 A;  2W7Q A;  3WJU A;  4QA8 A;  3WJV A;  3BMZ A;  2BYO A;  2ZF3 A;  4MXT A;  2P4B A;  2YZY A;  1IWM A;  3KSN A;  4EGD A;  3BK5 A;  2ZPD A;  2ZPC A; 
#chains in the Genus database with same CATH homology
 4KI3 A;  3M4W A;  1UA8 A;  1IWL A;  3WJT A;  3BUU A;  2V43 A;  4Z48 A;  1IWN A;  2V42 A;  2W7Q A;  3WJU A;  3WJV A;  4MXT A;  2P4B A;  2YZY A;  1IWM A;  3KSN A;  3BK5 A;  2ZPD A;  2ZPC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...