3A0BO

Crystal structure of br-substituted photosystem ii complex
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
242
structure length
242
Chain Sequence
TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
publication title Location of chloride and its possible functions in oxygen-evolving photosystem II revealed by X-ray crystallography
pubmed doi rcsb
molecule keywords Photosystem Q(B) protein
total genus 27
structure length 242
sequence length 242
chains with identical sequence o
ec nomenclature
pdb deposition date 2009-03-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursor 3a0bO01
3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domain 3a0bO02
4UB6O 3WU2O 3KZIO 4UB8O 4IL6O 5E79O 5GTIO 5B5EO 5G3AA 5B66O 3JCUO 3A0HO 1S5LO 3A0BO 5H2FO 5KAIO 5KAFO 4PJ0O 5G39A 5G38A 2AXTO 5GTHO 5TISO
chains in the Genus database with same CATH superfamily
1P4TA 3SYSA 4GF4A 3HOEA 2K0LA 3RBHA 4F4BA 4IL6O 3PQSA 3EMNX 3LK3A 4AUIA 5AFUK 2F1CX 3AA7B 5B66O 2Y0HA 1IZNB 1E54A 3FYXA 3LK41 3SYBA 4FZLA 4K3BA 4O3XB 4AKMA 4AKRB 4AYMC 3GP6A 3A0BO 3PRNA 3WI5A 4E1TA 4U9CA 5KAFO 1T16A 4PJ0O 4AYEC 2F1TA 5G39A 2YPVA 2F1VA 2R89A 2XE3A 3DWOX 4QQ1A 5EE2A 3POXA 8PRNA 3VE2A 2PRNA 6PRNA 4JFBA 2X9KA 2XG6A 3JTYA 4KRAA 1MM4A 3AA6B 2R4NA 4O4UA 5DL7A 1ORMA 3VZUX 4AYDC 2AXTO 3BRYA 4FZNA 4O4XA 5TISO 3UU2A 3WI4A 1ZHZA 3AAAA 2KZ7A 2XTRA 3PGRA 4BUMX 2Y0LA 2QTKA 3KZIO 4FUVA 3PGSA 4FOZA 1PRNA 1BXWA 4XNKA 3AA1A 5E79O 3T20A 1PHOA 4D64A 1YS5A 2KXPA 2OMFA 5G26A 2X27X 4FT6A 4RLCA 3DZMA 3T0SA 1OSMA 3AA0A 4LSHA 2FGQX 4B61A 3HOLA 3A0HO 2WJRA 4AYNA 3LK3B 1GFNA 2R4LA 4E1SA 5PRNA 4JCHA 5DL8A 5T5FA 5IYUA 5DL5A 4PUXA 2XE5A 4KR8A 1BH3A 2XMXA 4G76A 2IWVA 4CTDA 3SY7A 1ZHYA 1MPFA 3UPGA 3AAEA 1MM5A 4GCSA 4FSOA 1BT9A 1OPFA 1HXUA 1GFMA 3NSGA 3UAQA 4FSPA 2W80C 4O3YA 2YNKA 5AFUL 3VY8X 1HXXA 2ODJA 4AZLA 1QJ8A 3LK2A 3PORA 4XNLA 3QRCA 3C5OA 2KDYA 3BRZA 1T1LA 2JMMA 1Q9GA 3WU2O 4UB8O 3V8UA 5D5DA 5B5EO 5ADXK 4D5UA 5JDPA 5G3AA 3K19A 2MHLA 2K4TA 3JCUO 2ZFGA 3AAAB 2KZ7B 3POUA 3QRAA 3TZGA 4GHBA 3VZWX 4C00A 1S5LO 3AA1B 1QJPA 2M06A 3KVDD 2KXPB 4LSFA 3SY9A 2LHFA 3AA0B 3SZDA 3DA4A 4C4VA 5GV0A 4KR4A 1ZHWA 4RL9A 3DA3A 2XE2A 2KC0A 3BS0A 4RJWA 3VZTX 3T24A 2R4OA 3SZVA 2XTQA 2MNHA 2M07A 4GCQA 4LSIA 4N59A 4N74A 5GTHO 2JQYA 4GCPA 2O4VA 1ZHXA 2R88A 2R8AA 1GFOA 2WJQA 3AAEB 4FRTA 3AA7A 2Y0KA 3LK42 4O3ZA 3O0EA 5FVNA 1IZNA 4C69X 4Z3TA 3G7GA 4N58A 3PGUA 4RLBA 4UB6O 2WVPA 2PORA 4AKRA 5GTIO 3LK2B 3NJTA 1THQA 4D65A 1ZHTA 2J1NA 7PRNA 1G90A 4RJXA 3PQUA 4FESA 1Q9FA 1QJ9A 4G75A 2ERVA 2ZLDA 4N75A 4PR7A 5H2FO 4FQEA 1GFQA 4FZMA 5DL6A 4LSEA 5KAIO 4AFKA 3AA6A 4FMSA 2Y7SA 5G38A 4AYID 3HWBA 2GE4A 3DWNA 1GFPA 2Y2XA 4O49A 3PF1A 2FGRA 2LFUA 2N2MA 2W81C 4O3WA 5ADXL 4C4VB 2J4UP 3VY9X 2R4PA 3VE1A 2IWWA 3HW9A 4FRXA 3A2SX 3POQA 2XE1A 1H6S1 2N2LA 4K3CA 1HXTA
chains in the Genus database with same CATH topology
4UB6O 3WU2O 3KZIO 4UB8O 4IL6O 5E79O 5GTIO 5B5EO 5G3AA 5B66O 3JCUO 3A0HO 1S5LO 3A0BO 5H2FO 5KAIO 5KAFO 4PJ0O 5G39A 5G38A 2AXTO 5GTHO 5TISO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UB6 O;  3WU2 O;  3KZI O;  4UB8 O;  4IL6 O;  5E79 O;  5GTI O;  5B5E O;  5G3A A;  5B66 O;  3JCU O;  3A0H O;  1S5L O;  3A0B O;  5H2F O;  5KAI O;  5KAF O;  4PJ0 O;  5G39 A;  5G38 A;  2AXT O;  5GTH O;  5TIS O; 
#chains in the Genus database with same CATH topology
 1P4T A;  3SYS A;  4GF4 A;  3HOE A;  2K0L A;  3RBH A;  4F4B A;  4IL6 O;  3PQS A;  3EMN X;  3LK3 A;  4AUI A;  5AFU K;  2F1C X;  3AA7 B;  5B66 O;  2Y0H A;  1IZN B;  1E54 A;  3FYX A;  3LK4 1;  3SYB A;  4FZL A;  4K3B A;  4O3X B;  4AKM A;  4AKR B;  4AYM C;  3GP6 A;  3A0B O;  3PRN A;  3WI5 A;  4E1T A;  4U9C A;  5KAF O;  1T16 A;  4PJ0 O;  4AYE C;  2F1T A;  5G39 A;  2YPV A;  2F1V A;  2R89 A;  2XE3 A;  3DWO X;  4QQ1 A;  5EE2 A;  3POX A;  8PRN A;  3VE2 A;  2PRN A;  6PRN A;  4JFB A;  2X9K A;  2XG6 A;  3JTY A;  4KRA A;  1MM4 A;  3AA6 B;  2R4N A;  4O4U A;  5DL7 A;  1ORM A;  3VZU X;  4AYD C;  2AXT O;  3BRY A;  4FZN A;  4O4X A;  5TIS O;  3UU2 A;  3WI4 A;  1ZHZ A;  3AAA A;  2KZ7 A;  2XTR A;  3PGR A;  4BUM X;  2Y0L A;  2QTK A;  3KZI O;  4FUV A;  3PGS A;  4FOZ A;  1PRN A;  1BXW A;  4XNK A;  3AA1 A;  5E79 O;  3T20 A;  1PHO A;  4D64 A;  1YS5 A;  2KXP A;  2OMF A;  5G26 A;  2X27 X;  4FT6 A;  4RLC A;  3DZM A;  3T0S A;  1OSM A;  3AA0 A;  4LSH A;  2FGQ X;  4B61 A;  3HOL A;  3A0H O;  2WJR A;  4AYN A;  3LK3 B;  1GFN A;  2R4L A;  4E1S A;  5PRN A;  4JCH A;  5DL8 A;  5T5F A;  5IYU A;  5DL5 A;  4PUX A;  2XE5 A;  4KR8 A;  1BH3 A;  2XMX A;  4G76 A;  2IWV A;  4CTD A;  3SY7 A;  1ZHY A;  1MPF A;  3UPG A;  3AAE A;  1MM5 A;  4GCS A;  4FSO A;  1BT9 A;  1OPF A;  1HXU A;  1GFM A;  3NSG A;  3UAQ A;  4FSP A;  2W80 C;  4O3Y A;  2YNK A;  5AFU L;  3VY8 X;  1HXX A;  2ODJ A;  4AZL A;  1QJ8 A;  3LK2 A;  3POR A;  4XNL A;  3QRC A;  3C5O A;  2KDY A;  3BRZ A;  1T1L A;  2JMM A;  1Q9G A;  3WU2 O;  4UB8 O;  3V8U A;  5D5D A;  5B5E O;  5ADX K;  4D5U A;  5JDP A;  5G3A A;  3K19 A;  2MHL A;  2K4T A;  3JCU O;  2ZFG A;  3AAA B;  2KZ7 B;  3POU A;  3QRA A;  3TZG A;  4GHB A;  3VZW X;  4C00 A;  1S5L O;  3AA1 B;  1QJP A;  2M06 A;  3KVD D;  2KXP B;  4LSF A;  3SY9 A;  2LHF A;  3AA0 B;  3SZD A;  3DA4 A;  4C4V A;  5GV0 A;  4KR4 A;  1ZHW A;  4RL9 A;  3DA3 A;  2XE2 A;  2KC0 A;  3BS0 A;  4RJW A;  3VZT X;  3T24 A;  2R4O A;  3SZV A;  2XTQ A;  2MNH A;  2M07 A;  4GCQ A;  4LSI A;  4N59 A;  4N74 A;  5GTH O;  2JQY A;  4GCP A;  2O4V A;  1ZHX A;  2R88 A;  2R8A A;  1GFO A;  2WJQ A;  3AAE B;  4FRT A;  3AA7 A;  2Y0K A;  3LK4 2;  4O3Z A;  3O0E A;  5FVN A;  1IZN A;  4C69 X;  4Z3T A;  3G7G A;  4N58 A;  3PGU A;  4RLB A;  4UB6 O;  2WVP A;  2POR A;  4AKR A;  5GTI O;  3LK2 B;  3NJT A;  1THQ A;  4D65 A;  1ZHT A;  2J1N A;  7PRN A;  1G90 A;  4RJX A;  3PQU A;  4FES A;  1Q9F A;  1QJ9 A;  4G75 A;  2ERV A;  2ZLD A;  4N75 A;  4PR7 A;  5H2F O;  4FQE A;  1GFQ A;  4FZM A;  5DL6 A;  4LSE A;  5KAI O;  4AFK A;  3AA6 A;  4FMS A;  2Y7S A;  5G38 A;  4AYI D;  3HWB A;  2GE4 A;  3DWN A;  1GFP A;  2Y2X A;  4O49 A;  3PF1 A;  2FGR A;  2LFU A;  2N2M A;  2W81 C;  4O3W A;  5ADX L;  4C4V B;  2J4U P;  3VY9 X;  2R4P A;  3VE1 A;  2IWW A;  3HW9 A;  4FRX A;  3A2S X;  3POQ A;  2XE1 A;  1H6S 1;  2N2L A;  4K3C A;  1HXT A; 
#chains in the Genus database with same CATH homology
 4UB6 O;  3WU2 O;  3KZI O;  4UB8 O;  4IL6 O;  5E79 O;  5GTI O;  5B5E O;  5G3A A;  5B66 O;  3JCU O;  3A0H O;  1S5L O;  3A0B O;  5H2F O;  5KAI O;  5KAF O;  4PJ0 O;  5G39 A;  5G38 A;  2AXT O;  5GTH O;  5TIS O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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