3A20A

L122k mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNEGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis
pubmed doi rcsb
molecule tags Electron transport
source organism Desulfovibrio vulgaris str. 'miyazaki f'
molecule keywords FMN-binding protein
total genus 31
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3a20A00
4HMSA 2RE7A 5BNCA 1DNLA 2HQ7A 1W3PA 2E83A 1RFEA 1FLMA 2ED4A 4N7RC 4HMVA 5CHOA 1G77A 3AMFA 3BA3A 4R82A 3VY5A 3DB0A 3R5LA 1I0SA 3HMZA 1WLIA 3K87A 3RH7A 3F7EA 3VY2A 2R6VA 1YOAA 2X1KA 3ZODA 3TGVA 1WLKA 1WGBA 1G79A 4HMWA 2I02A 2R0XA 3U35A 2I51A 3R5ZA 3DNHA 3R5WA 4Y9IA 1W3QA 1G76A 3SWJA 3FGEA 1EJEA 1JNWA 3A6QA 2D38A 2HQ9A 1USCA 2FG9A 3GASA 1CI0A 4L82A 2PTFA 3U5WA 4F07A 3VYAA 2ARZA 3R5PA 1NRGA 3ZOHA 2IABA 3B5MA 2Q9KA 4HX6A 3EC6A 3A6RA 2QCKA 2HTDA 2A2JA 2HHZA 2X1JA 3HY8A 3KYFA 3PFTA 3U34A 4YBNA 3DMBA 3IN6A 2ASFA 4YWNA 1TY9A 4IRAA 2FHQA 2D37A 1WV4A 2IG6A 3ZOEA 3K88A 3KYGA 1RZ0A 4Z85A 2RDEA 4XHYA 1W3RA 3R5YA 2HTIA 2IMLA 3CP3A 1W3OA 4XJ2A 5JABA 3H96A 3ZOFA 1AXJA 2FURA 2OL5A 3NFWA 4ZKYA 4HMTA 2QEAA 3U0IA 1T9MA 2NR4A 2AQ6A 1G78A 1I0RA 1XHNA 1YLNA 2VPAA 1VL7A 4QVBA 3ZOGA 5CHEC 1USFA 3ZOCA 5ESCA 4HMUA 3CB0A 3K86A 2D5MA 2D36A 2ECUA 3AWHA 2ECRA 3BPKA 3BNKA 1W9AA 1XXOA 4HMXA 1RZ1A 1Y30A 2GJGA 2OU5A 3FKHA 3R5RA 3A20A 3E4VA
chains in the Genus database with same CATH superfamily
4HMSA 2RE7A 5BNCA 1DNLA 2HQ7A 1W3PA 4TV4A 2E83A 1RFEA 1FLMA 2ED4A 4N7RC 4HMVA 5CHOA 1G77A 3AMFA 3BA3A 4R82A 3VY5A 3DB0A 3R5LA 1I0SA 3HMZA 1WLIA 3K87A 3RH7A 3F7EA 3VY2A 2R6VA 1YOAA 2X1KA 3ZODA 3TGVA 1WLKA 1WGBA 1G79A 4HMWA 2I02A 2R0XA 3U35A 2I51A 3R5ZA 3DNHA 3R5WA 4Y9IA 1W3QA 1G76A 3SWJA 3V4HA 3FGEA 1EJEA 1JNWA 3A6QA 2D38A 2HQ9A 1USCA 2FG9A 3GASA 1CI0A 4L82A 2PTFA 2L1TA 3U5WA 4F07A 3VYAA 2ARZA 4MTKA 3R5PA 1NRGA 3ZOHA 2IABA 3B5MA 2Q9KA 4HX6A 3EC6A 3A6RA 2QCKA 4W64A 2HTDA 2A2JA 2HHZA 2X1JA 3HY8A 3KYFA 3PFTA 3U34A 4YBNA 3DMBA 2K4QA 3IN6A 2ASFA 4YWNA 1TY9A 4IRAA 2FHQA 2D37A 1WV4A 2IG6A 3ZOEA 3K88A 3KYGA 1RZ0A 2P5ZX 2RDEA 4Z85A 4XHYA 1W3RA 3HE1A 2HTIA 2IMLA 3CP3A 3R5YA 1W3OA 4XJ2A 4HKHA 5JABA 3H96A 3ZOFA 1AXJA 2FURA 2OL5A 3NFWA 4ZKYA 1Y12A 4HMTA 2QEAA 3U0IA 1T9MA 2NR4A 2AQ6A 1G78A 1I0RA 1XHNA 1YLNA 3EAAA 2VPAA 1VL7A 4QVBA 3ZOGA 5CHEC 1USFA 3ZOCA 5ESCA 4HMUA 3CB0A 3K86A 2D5MA 2D36A 2ECUA 3AWHA 2ECRA 3BPKA 3BNKA 1W9AA 1XXOA 4HMXA 1RZ1A 1Y30A 2GJGA 2OU5A 3FKHA 3R5RA 4UHVA 3A20A 2GUJA 3E4VA
chains in the Genus database with same CATH topology
4HMSA 2RE7A 5BNCA 1DNLA 2HQ7A 1W3PA 2E83A 1RFEA 1FLMA 2ED4A 4N7RC 4HMVA 5CHOA 1G77A 3AMFA 3BA3A 4R82A 3VY5A 3DB0A 3R5LA 1I0SA 3HMZA 1WLIA 3K87A 3RH7A 3F7EA 3VY2A 2R6VA 1YOAA 2X1KA 3ZODA 3TGVA 1WLKA 1WGBA 1G79A 4HMWA 2I02A 2R0XA 3U35A 2I51A 3R5ZA 3DNHA 3R5WA 4Y9IA 1W3QA 1G76A 3SWJA 3FGEA 1EJEA 1JNWA 3A6QA 2D38A 2HQ9A 1USCA 2FG9A 3GASA 1CI0A 4L82A 2PTFA 3U5WA 4F07A 3VYAA 2ARZA 3R5PA 1NRGA 3ZOHA 2IABA 3B5MA 2Q9KA 4HX6A 3EC6A 3A6RA 2QCKA 2HTDA 2A2JA 2HHZA 2X1JA 3HY8A 3KYFA 3PFTA 3U34A 4YBNA 3DMBA 3IN6A 2ASFA 4YWNA 1TY9A 4IRAA 2FHQA 2D37A 1WV4A 2IG6A 3ZOEA 3K88A 3KYGA 1RZ0A 4Z85A 2RDEA 4XHYA 1W3RA 3R5YA 2HTIA 2IMLA 3CP3A 1W3OA 4XJ2A 5JABA 3H96A 3ZOFA 1AXJA 2FURA 2OL5A 3NFWA 4ZKYA 4HMTA 2QEAA 3U0IA 1T9MA 2NR4A 2AQ6A 1G78A 1I0RA 1XHNA 1YLNA 2VPAA 1VL7A 4QVBA 3ZOGA 5CHEC 1USFA 3ZOCA 5ESCA 4HMUA 3CB0A 3K86A 2D5MA 2D36A 2ECUA 3AWHA 2ECRA 3BPKA 3BNKA 1W9AA 1XXOA 4HMXA 1RZ1A 1Y30A 2GJGA 2OU5A 3FKHA 3R5RA 3A20A 3E4VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HMS A;  2RE7 A;  5BNC A;  1DNL A;  2HQ7 A;  1W3P A;  2E83 A;  1RFE A;  1FLM A;  2ED4 A;  4N7R C;  4HMV A;  5CHO A;  1G77 A;  3AMF A;  3BA3 A;  4R82 A;  3VY5 A;  3DB0 A;  3R5L A;  1I0S A;  3HMZ A;  1WLI A;  3K87 A;  3RH7 A;  3F7E A;  3VY2 A;  2R6V A;  1YOA A;  2X1K A;  3ZOD A;  3TGV A;  1WLK A;  1WGB A;  1G79 A;  4HMW A;  2I02 A;  2R0X A;  3U35 A;  2I51 A;  3R5Z A;  3DNH A;  3R5W A;  4Y9I A;  1W3Q A;  1G76 A;  3SWJ A;  3FGE A;  1EJE A;  1JNW A;  3A6Q A;  2D38 A;  2HQ9 A;  1USC A;  2FG9 A;  3GAS A;  1CI0 A;  4L82 A;  2PTF A;  3U5W A;  4F07 A;  3VYA A;  2ARZ A;  3R5P A;  1NRG A;  3ZOH A;  2IAB A;  3B5M A;  2Q9K A;  4HX6 A;  3EC6 A;  3A6R A;  2QCK A;  2HTD A;  2A2J A;  2HHZ A;  2X1J A;  3HY8 A;  3KYF A;  3PFT A;  3U34 A;  4YBN A;  3DMB A;  3IN6 A;  2ASF A;  4YWN A;  1TY9 A;  4IRA A;  2FHQ A;  2D37 A;  1WV4 A;  2IG6 A;  3ZOE A;  3K88 A;  3KYG A;  1RZ0 A;  4Z85 A;  2RDE A;  4XHY A;  1W3R A;  3R5Y A;  2HTI A;  2IML A;  3CP3 A;  1W3O A;  4XJ2 A;  5JAB A;  3H96 A;  3ZOF A;  1AXJ A;  2FUR A;  2OL5 A;  3NFW A;  4ZKY A;  4HMT A;  2QEA A;  3U0I A;  1T9M A;  2NR4 A;  2AQ6 A;  1G78 A;  1I0R A;  1XHN A;  1YLN A;  2VPA A;  1VL7 A;  4QVB A;  3ZOG A;  5CHE C;  1USF A;  3ZOC A;  5ESC A;  4HMU A;  3CB0 A;  3K86 A;  2D5M A;  2D36 A;  2ECU A;  3AWH A;  2ECR A;  3BPK A;  3BNK A;  1W9A A;  1XXO A;  4HMX A;  1RZ1 A;  1Y30 A;  2GJG A;  2OU5 A;  3FKH A;  3R5R A;  3A20 A;  3E4V A; 
#chains in the Genus database with same CATH topology
 4HMS A;  2RE7 A;  5BNC A;  1DNL A;  2HQ7 A;  1W3P A;  4TV4 A;  2E83 A;  1RFE A;  1FLM A;  2ED4 A;  4N7R C;  4HMV A;  5CHO A;  1G77 A;  3AMF A;  3BA3 A;  4R82 A;  3VY5 A;  3DB0 A;  3R5L A;  1I0S A;  3HMZ A;  1WLI A;  3K87 A;  3RH7 A;  3F7E A;  3VY2 A;  2R6V A;  1YOA A;  2X1K A;  3ZOD A;  3TGV A;  1WLK A;  1WGB A;  1G79 A;  4HMW A;  2I02 A;  2R0X A;  3U35 A;  2I51 A;  3R5Z A;  3DNH A;  3R5W A;  4Y9I A;  1W3Q A;  1G76 A;  3SWJ A;  3V4H A;  3FGE A;  1EJE A;  1JNW A;  3A6Q A;  2D38 A;  2HQ9 A;  1USC A;  2FG9 A;  3GAS A;  1CI0 A;  4L82 A;  2PTF A;  2L1T A;  3U5W A;  4F07 A;  3VYA A;  2ARZ A;  4MTK A;  3R5P A;  1NRG A;  3ZOH A;  2IAB A;  3B5M A;  2Q9K A;  4HX6 A;  3EC6 A;  3A6R A;  2QCK A;  4W64 A;  2HTD A;  2A2J A;  2HHZ A;  2X1J A;  3HY8 A;  3KYF A;  3PFT A;  3U34 A;  4YBN A;  3DMB A;  2K4Q A;  3IN6 A;  2ASF A;  4YWN A;  1TY9 A;  4IRA A;  2FHQ A;  2D37 A;  1WV4 A;  2IG6 A;  3ZOE A;  3K88 A;  3KYG A;  1RZ0 A;  2P5Z X;  2RDE A;  4Z85 A;  4XHY A;  1W3R A;  3HE1 A;  2HTI A;  2IML A;  3CP3 A;  3R5Y A;  1W3O A;  4XJ2 A;  4HKH A;  5JAB A;  3H96 A;  3ZOF A;  1AXJ A;  2FUR A;  2OL5 A;  3NFW A;  4ZKY A;  1Y12 A;  4HMT A;  2QEA A;  3U0I A;  1T9M A;  2NR4 A;  2AQ6 A;  1G78 A;  1I0R A;  1XHN A;  1YLN A;  3EAA A;  2VPA A;  1VL7 A;  4QVB A;  3ZOG A;  5CHE C;  1USF A;  3ZOC A;  5ESC A;  4HMU A;  3CB0 A;  3K86 A;  2D5M A;  2D36 A;  2ECU A;  3AWH A;  2ECR A;  3BPK A;  3BNK A;  1W9A A;  1XXO A;  4HMX A;  1RZ1 A;  1Y30 A;  2GJG A;  2OU5 A;  3FKH A;  3R5R A;  4UHV A;  3A20 A;  2GUJ A;  3E4V A; 
#chains in the Genus database with same CATH homology
 4HMS A;  2RE7 A;  5BNC A;  1DNL A;  2HQ7 A;  1W3P A;  2E83 A;  1RFE A;  1FLM A;  2ED4 A;  4N7R C;  4HMV A;  5CHO A;  1G77 A;  3AMF A;  3BA3 A;  4R82 A;  3VY5 A;  3DB0 A;  3R5L A;  1I0S A;  3HMZ A;  1WLI A;  3K87 A;  3RH7 A;  3F7E A;  3VY2 A;  2R6V A;  1YOA A;  2X1K A;  3ZOD A;  3TGV A;  1WLK A;  1WGB A;  1G79 A;  4HMW A;  2I02 A;  2R0X A;  3U35 A;  2I51 A;  3R5Z A;  3DNH A;  3R5W A;  4Y9I A;  1W3Q A;  1G76 A;  3SWJ A;  3FGE A;  1EJE A;  1JNW A;  3A6Q A;  2D38 A;  2HQ9 A;  1USC A;  2FG9 A;  3GAS A;  1CI0 A;  4L82 A;  2PTF A;  3U5W A;  4F07 A;  3VYA A;  2ARZ A;  3R5P A;  1NRG A;  3ZOH A;  2IAB A;  3B5M A;  2Q9K A;  4HX6 A;  3EC6 A;  3A6R A;  2QCK A;  2HTD A;  2A2J A;  2HHZ A;  2X1J A;  3HY8 A;  3KYF A;  3PFT A;  3U34 A;  4YBN A;  3DMB A;  3IN6 A;  2ASF A;  4YWN A;  1TY9 A;  4IRA A;  2FHQ A;  2D37 A;  1WV4 A;  2IG6 A;  3ZOE A;  3K88 A;  3KYG A;  1RZ0 A;  4Z85 A;  2RDE A;  4XHY A;  1W3R A;  3R5Y A;  2HTI A;  2IML A;  3CP3 A;  1W3O A;  4XJ2 A;  5JAB A;  3H96 A;  3ZOF A;  1AXJ A;  2FUR A;  2OL5 A;  3NFW A;  4ZKY A;  4HMT A;  2QEA A;  3U0I A;  1T9M A;  2NR4 A;  2AQ6 A;  1G78 A;  1I0R A;  1XHN A;  1YLN A;  2VPA A;  1VL7 A;  4QVB A;  3ZOG A;  5CHE C;  1USF A;  3ZOC A;  5ESC A;  4HMU A;  3CB0 A;  3K86 A;  2D5M A;  2D36 A;  2ECU A;  3AWH A;  2ECR A;  3BPK A;  3BNK A;  1W9A A;  1XXO A;  4HMX A;  1RZ1 A;  1Y30 A;  2GJG A;  2OU5 A;  3FKH A;  3R5R A;  3A20 A;  3E4V A; 
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similar chains in the Genus database (?% sequence similarity)
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