3A2QA

Structure of 6-aminohexanoate cyclic dimer hydrolase complexed with substrate
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
482
structure length
482
Chain Sequence
VDLWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESELASGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords 6-aminohexanoate-cyclic-dimer hydrolase
publication title X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation
pubmed doi rcsb
source organism Arthrobacter sp.
total genus 184
structure length 482
sequence length 482
ec nomenclature ec 3.5.2.12: 6-aminohexanoate-cyclic-dimer hydrolase.
pdb deposition date 2009-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 3a2qA00
3LJ7A 3K83A 3LJ6A 4HBPA 1M22A 1OCKA 1O9PA 3QJ9A 2G5HA 3H0RA 2DQNA 3PPMA 1OBKA 4ISTA 4N0HA 1MT5A 3QK5A 1M21A 1O9OA 4GYRA 1OCLA 3PR0A 3A2QA 3K7FA 2F2AA 1OBJA 3A2PA 1O9NA 4ISSA 2VYAA 3A1IA 3H0MA 4CP8A 2WJ2A 5AC3A 3KFUE 2WJ1A 3H0LA 4GYSA 4J5PA 5EWQA 2GI3A 2DF4A 3OJ8A 1O9QA 4DO3A 3QJ8A 2DC0A 3A1KA 1OBIA 1OCHA 3K84A 1OBLA 1OCMA 4N0IA 3IP4A 3AL0A 4WJ3A 4YJ6A 3QKVA 2G5IA 4YJIA 2WAPA
chains in the Genus database with same CATH superfamily
3LJ7A 3K83A 3LJ6A 4HBPA 1M22A 1OCKA 1O9PA 3QJ9A 2G5HA 3H0RA 2DQNA 3PPMA 1OBKA 4ISTA 4N0HA 1MT5A 3QK5A 1M21A 1O9OA 4GYRA 1OCLA 3PR0A 3A2QA 3K7FA 2F2AA 1OBJA 3A2PA 1O9NA 4ISSA 2VYAA 3A1IA 3H0MA 4CP8A 2WJ2A 5AC3A 3KFUE 2WJ1A 3H0LA 4GYSA 4J5PA 5EWQA 2GI3A 2DF4A 3OJ8A 1O9QA 4DO3A 3QJ8A 2DC0A 3A1KA 1OBIA 1OCHA 3K84A 1OBLA 1OCMA 4N0IA 3IP4A 3AL0A 4WJ3A 4YJ6A 3QKVA 2G5IA 4YJIA 2WAPA
chains in the Genus database with same CATH topology
3LJ7A 3K83A 3LJ6A 4HBPA 1M22A 1OCKA 1O9PA 3QJ9A 2G5HA 3H0RA 2DQNA 3PPMA 1OBKA 4ISTA 4N0HA 1MT5A 3QK5A 1M21A 1O9OA 4GYRA 1OCLA 3PR0A 3A2QA 3K7FA 2F2AA 1OBJA 3A2PA 1O9NA 4ISSA 2VYAA 3A1IA 3H0MA 4CP8A 2WJ2A 5AC3A 3KFUE 2WJ1A 3H0LA 4GYSA 4J5PA 5EWQA 2GI3A 2DF4A 3OJ8A 1O9QA 4DO3A 3QJ8A 2DC0A 3A1KA 1OBIA 1OCHA 3K84A 1OBLA 1OCMA 4N0IA 3IP4A 3AL0A 4WJ3A 4YJ6A 3QKVA 2G5IA 4YJIA 2WAPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LJ7 A;  3K83 A;  3LJ6 A;  4HBP A;  1M22 A;  1OCK A;  1O9P A;  3QJ9 A;  2G5H A;  3H0R A;  2DQN A;  3PPM A;  1OBK A;  4IST A;  4N0H A;  1MT5 A;  3QK5 A;  1M21 A;  1O9O A;  4GYR A;  1OCL A;  3PR0 A;  3A2Q A;  3K7F A;  2F2A A;  1OBJ A;  3A2P A;  1O9N A;  4ISS A;  2VYA A;  3A1I A;  3H0M A;  4CP8 A;  2WJ2 A;  5AC3 A;  3KFU E;  2WJ1 A;  3H0L A;  4GYS A;  4J5P A;  5EWQ A;  2GI3 A;  2DF4 A;  3OJ8 A;  1O9Q A;  4DO3 A;  3QJ8 A;  2DC0 A;  3A1K A;  1OBI A;  1OCH A;  3K84 A;  1OBL A;  1OCM A;  4N0I A;  3IP4 A;  3AL0 A;  4WJ3 A;  4YJ6 A;  3QKV A;  2G5I A;  4YJI A;  2WAP A; 
#chains in the Genus database with same CATH topology
 3LJ7 A;  3K83 A;  3LJ6 A;  4HBP A;  1M22 A;  1OCK A;  1O9P A;  3QJ9 A;  2G5H A;  3H0R A;  2DQN A;  3PPM A;  1OBK A;  4IST A;  4N0H A;  1MT5 A;  3QK5 A;  1M21 A;  1O9O A;  4GYR A;  1OCL A;  3PR0 A;  3A2Q A;  3K7F A;  2F2A A;  1OBJ A;  3A2P A;  1O9N A;  4ISS A;  2VYA A;  3A1I A;  3H0M A;  4CP8 A;  2WJ2 A;  5AC3 A;  3KFU E;  2WJ1 A;  3H0L A;  4GYS A;  4J5P A;  5EWQ A;  2GI3 A;  2DF4 A;  3OJ8 A;  1O9Q A;  4DO3 A;  3QJ8 A;  2DC0 A;  3A1K A;  1OBI A;  1OCH A;  3K84 A;  1OBL A;  1OCM A;  4N0I A;  3IP4 A;  3AL0 A;  4WJ3 A;  4YJ6 A;  3QKV A;  2G5I A;  4YJI A;  2WAP A; 
#chains in the Genus database with same CATH homology
 3LJ7 A;  3K83 A;  3LJ6 A;  4HBP A;  1M22 A;  1OCK A;  1O9P A;  3QJ9 A;  2G5H A;  3H0R A;  2DQN A;  3PPM A;  1OBK A;  4IST A;  4N0H A;  1MT5 A;  3QK5 A;  1M21 A;  1O9O A;  4GYR A;  1OCL A;  3PR0 A;  3A2Q A;  3K7F A;  2F2A A;  1OBJ A;  3A2P A;  1O9N A;  4ISS A;  2VYA A;  3A1I A;  3H0M A;  4CP8 A;  2WJ2 A;  5AC3 A;  3KFU E;  2WJ1 A;  3H0L A;  4GYS A;  4J5P A;  5EWQ A;  2GI3 A;  2DF4 A;  3OJ8 A;  1O9Q A;  4DO3 A;  3QJ8 A;  2DC0 A;  3A1K A;  1OBI A;  1OCH A;  3K84 A;  1OBL A;  1OCM A;  4N0I A;  3IP4 A;  3AL0 A;  4WJ3 A;  4YJ6 A;  3QKV A;  2G5I A;  4YJI A;  2WAP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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