3A5LS

Crystal structure of a dictyostelium p109a mg2+-actin in complex with human gelsolin segment 1
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
123
structure length
123
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile protein
molecule keywords Gelsolin
publication title Structural basis for actin assembly, activation of ATP hydrolysis, and delayed phosphate release
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2009-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3a5lS00
5DD2A 1H1VG 1HQZ1 5KYWB 1QPVA 2NUPA 3EGDB 2FF3A 5FAEA 1VFQA 1YVNG 1AK7A 5IVUA 4KEDA 1COFA 1CNUA 4PKIG 1M2OA 2LJ8A 1X67A 1NLVG 5KYXA 2MV2A 1T3XA 3CIPG 1D4XG 2L72A 4KEFA 5HVKB 1SVYA 2FH3A 3A5NS 1YAGG 4JD2H 2FGHA 1CFYA 3TU5B 3L50A 1NPHA 1P8XA 2HD7A 3EFOA 3A5MS 1JHWA 2MP4A 1C0GS 2NUTA 4S10C 1DEJS 1Q8GA 3EGXA 2FH1A 4CBUG 1T3YA 1MDUA 5FAFA 4LIZA 5KYYB 5KYNA 5KYWA 3EGDA 2FH4A 2VACA 1M2VB 1T44G 2I2QA 3A5LS 5L6WC 2QTVA 2KVKA 1PCXA 3FFKA 1PD1A 1WNJA 5KYUB 2XF1A 2FH2A 4PKHB 1Q8XA 1KCQA 3CJCG 4CBWG 1M4JA 1NMDG 3EG9B 3FG7A 3DAWB 2NUPB 4CBXG 1RGIG 1AK6A 2VILA 2XFAA 1D0NA 5A1MA 1J72A 1WFSA 2LLFA 1SVRA 4BEX1 5KYXB 2VIKA 1AHQA 2W0IA 1NM1G 1TMWA 1TVJA 1P8ZG 1UDMA 4PKGG 4Z94G 3EH2A 3A5OS 5HVKD 5KYYA 1EQYS 1C0FS 1F7SA 1ESVS 1M2VA 3CI5G 1WM4A 3EFOB 2FF6G 1T2LA 2MOTA 3EH1A 3CJBG 1PD0A 2LXXA 2NUTB 5KYUA 2D8BA 3EGXB 3FG6A 4KEEA 3FFNA 1SVQA 1VKKA 3Q2BA 1V6FA 3EG9A
chains in the Genus database with same CATH superfamily
5DD2A 1H1VG 1HQZ1 5KYWB 1QPVA 2NUPA 3EGDB 2FF3A 5FAEA 1VFQA 1YVNG 1AK7A 5IVUA 4KEDA 1COFA 1CNUA 4PKIG 1M2OA 2LJ8A 1X67A 1NLVG 5KYXA 2MV2A 1T3XA 3CIPG 1D4XG 2L72A 4KEFA 5HVKB 1SVYA 2FH3A 3A5NS 1YAGG 4JD2H 2FGHA 1CFYA 3TU5B 3L50A 1NPHA 1P8XA 2HD7A 3EFOA 3A5MS 1JHWA 2MP4A 1C0GS 2NUTA 4S10C 1DEJS 1Q8GA 3EGXA 2FH1A 4CBUG 1T3YA 1MDUA 5FAFA 4LIZA 5KYYB 5KYNA 5KYWA 3EGDA 2FH4A 2VACA 1M2VB 1T44G 2I2QA 3A5LS 5L6WC 2QTVA 2KVKA 1PCXA 3FFKA 1PD1A 1WNJA 5KYUB 2XF1A 2FH2A 4PKHB 1Q8XA 1KCQA 3CJCG 4CBWG 1M4JA 1NMDG 3EG9B 3FG7A 3DAWB 2NUPB 4CBXG 1RGIG 1AK6A 2VILA 2XFAA 1D0NA 5A1MA 1J72A 1WFSA 2LLFA 1SVRA 4BEX1 5KYXB 2VIKA 1AHQA 2W0IA 1NM1G 1TMWA 1TVJA 1P8ZG 1UDMA 4PKGG 4Z94G 3EH2A 3A5OS 5HVKD 5KYYA 1EQYS 1C0FS 1F7SA 1ESVS 1M2VA 3CI5G 1WM4A 3EFOB 2FF6G 1T2LA 2MOTA 3EH1A 3CJBG 1PD0A 2LXXA 3DA7A 2NUTB 5KYUA 2D8BA 3EGXB 3FG6A 4KEEA 3FFNA 1SVQA 1VKKA 3Q2BA 1V6FA 3EG9A
chains in the Genus database with same CATH topology
5DD2A 1H1VG 1HQZ1 5KYWB 1QPVA 2NUPA 3EGDB 2FF3A 5FAEA 1VFQA 1YVNG 1AK7A 5IVUA 4KEDA 1COFA 1CNUA 4PKIG 1M2OA 2LJ8A 1X67A 1NLVG 5KYXA 2MV2A 1T3XA 3CIPG 1D4XG 2L72A 4KEFA 5HVKB 1SVYA 2FH3A 3A5NS 1YAGG 4JD2H 2FGHA 1CFYA 3TU5B 3L50A 1NPHA 1P8XA 2HD7A 3EFOA 3A5MS 1JHWA 2MP4A 1C0GS 2NUTA 4S10C 1DEJS 1Q8GA 3EGXA 2FH1A 4CBUG 1T3YA 1MDUA 5FAFA 4LIZA 5KYYB 5KYNA 5KYWA 3EGDA 2FH4A 2VACA 1M2VB 1T44G 2I2QA 3A5LS 5L6WC 2QTVA 2KVKA 1PCXA 3FFKA 1PD1A 1WNJA 5KYUB 2XF1A 2FH2A 4PKHB 1Q8XA 1KCQA 3CJCG 4CBWG 1M4JA 1NMDG 3EG9B 3FG7A 3DAWB 2NUPB 4CBXG 1RGIG 1AK6A 2VILA 2XFAA 1D0NA 5A1MA 1J72A 1WFSA 2LLFA 1SVRA 4BEX1 5KYXB 2VIKA 1AHQA 2W0IA 1NM1G 1TMWA 1TVJA 1P8ZG 1UDMA 4PKGG 4Z94G 3EH2A 3A5OS 5HVKD 5KYYA 1EQYS 1C0FS 1F7SA 1ESVS 1M2VA 3CI5G 1WM4A 3EFOB 2FF6G 1T2LA 2MOTA 3EH1A 3CJBG 1PD0A 2LXXA 3DA7A 2NUTB 5KYUA 2D8BA 3EGXB 3FG6A 4KEEA 3FFNA 1SVQA 1VKKA 3Q2BA 1V6FA 3EG9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DD2 A;  1H1V G;  1HQZ 1;  5KYW B;  1QPV A;  2NUP A;  3EGD B;  2FF3 A;  5FAE A;  1VFQ A;  1YVN G;  1AK7 A;  5IVU A;  4KED A;  1COF A;  1CNU A;  4PKI G;  1M2O A;  2LJ8 A;  1X67 A;  1NLV G;  5KYX A;  2MV2 A;  1T3X A;  3CIP G;  1D4X G;  2L72 A;  4KEF A;  5HVK B;  1SVY A;  2FH3 A;  3A5N S;  1YAG G;  4JD2 H;  2FGH A;  1CFY A;  3TU5 B;  3L50 A;  1NPH A;  1P8X A;  2HD7 A;  3EFO A;  3A5M S;  1JHW A;  2MP4 A;  1C0G S;  2NUT A;  4S10 C;  1DEJ S;  1Q8G A;  3EGX A;  2FH1 A;  4CBU G;  1T3Y A;  1MDU A;  5FAF A;  4LIZ A;  5KYY B;  5KYN A;  5KYW A;  3EGD A;  2FH4 A;  2VAC A;  1M2V B;  1T44 G;  2I2Q A;  3A5L S;  5L6W C;  2QTV A;  2KVK A;  1PCX A;  3FFK A;  1PD1 A;  1WNJ A;  5KYU B;  2XF1 A;  2FH2 A;  4PKH B;  1Q8X A;  1KCQ A;  3CJC G;  4CBW G;  1M4J A;  1NMD G;  3EG9 B;  3FG7 A;  3DAW B;  2NUP B;  4CBX G;  1RGI G;  1AK6 A;  2VIL A;  2XFA A;  1D0N A;  5A1M A;  1J72 A;  1WFS A;  2LLF A;  1SVR A;  4BEX 1;  5KYX B;  2VIK A;  1AHQ A;  2W0I A;  1NM1 G;  1TMW A;  1TVJ A;  1P8Z G;  1UDM A;  4PKG G;  4Z94 G;  3EH2 A;  3A5O S;  5HVK D;  5KYY A;  1EQY S;  1C0F S;  1F7S A;  1ESV S;  1M2V A;  3CI5 G;  1WM4 A;  3EFO B;  2FF6 G;  1T2L A;  2MOT A;  3EH1 A;  3CJB G;  1PD0 A;  2LXX A;  2NUT B;  5KYU A;  2D8B A;  3EGX B;  3FG6 A;  4KEE A;  3FFN A;  1SVQ A;  1VKK A;  3Q2B A;  1V6F A;  3EG9 A; 
#chains in the Genus database with same CATH topology
 5DD2 A;  1H1V G;  1HQZ 1;  5KYW B;  1QPV A;  2NUP A;  3EGD B;  2FF3 A;  5FAE A;  1VFQ A;  1YVN G;  1AK7 A;  5IVU A;  4KED A;  1COF A;  1CNU A;  4PKI G;  1M2O A;  2LJ8 A;  1X67 A;  1NLV G;  5KYX A;  2MV2 A;  1T3X A;  3CIP G;  1D4X G;  2L72 A;  4KEF A;  5HVK B;  1SVY A;  2FH3 A;  3A5N S;  1YAG G;  4JD2 H;  2FGH A;  1CFY A;  3TU5 B;  3L50 A;  1NPH A;  1P8X A;  2HD7 A;  3EFO A;  3A5M S;  1JHW A;  2MP4 A;  1C0G S;  2NUT A;  4S10 C;  1DEJ S;  1Q8G A;  3EGX A;  2FH1 A;  4CBU G;  1T3Y A;  1MDU A;  5FAF A;  4LIZ A;  5KYY B;  5KYN A;  5KYW A;  3EGD A;  2FH4 A;  2VAC A;  1M2V B;  1T44 G;  2I2Q A;  3A5L S;  5L6W C;  2QTV A;  2KVK A;  1PCX A;  3FFK A;  1PD1 A;  1WNJ A;  5KYU B;  2XF1 A;  2FH2 A;  4PKH B;  1Q8X A;  1KCQ A;  3CJC G;  4CBW G;  1M4J A;  1NMD G;  3EG9 B;  3FG7 A;  3DAW B;  2NUP B;  4CBX G;  1RGI G;  1AK6 A;  2VIL A;  2XFA A;  1D0N A;  5A1M A;  1J72 A;  1WFS A;  2LLF A;  1SVR A;  4BEX 1;  5KYX B;  2VIK A;  1AHQ A;  2W0I A;  1NM1 G;  1TMW A;  1TVJ A;  1P8Z G;  1UDM A;  4PKG G;  4Z94 G;  3EH2 A;  3A5O S;  5HVK D;  5KYY A;  1EQY S;  1C0F S;  1F7S A;  1ESV S;  1M2V A;  3CI5 G;  1WM4 A;  3EFO B;  2FF6 G;  1T2L A;  2MOT A;  3EH1 A;  3CJB G;  1PD0 A;  2LXX A;  3DA7 A;  2NUT B;  5KYU A;  2D8B A;  3EGX B;  3FG6 A;  4KEE A;  3FFN A;  1SVQ A;  1VKK A;  3Q2B A;  1V6F A;  3EG9 A; 
#chains in the Genus database with same CATH homology
 5DD2 A;  1H1V G;  1HQZ 1;  5KYW B;  1QPV A;  2NUP A;  3EGD B;  2FF3 A;  5FAE A;  1VFQ A;  1YVN G;  1AK7 A;  5IVU A;  4KED A;  1COF A;  1CNU A;  4PKI G;  1M2O A;  2LJ8 A;  1X67 A;  1NLV G;  5KYX A;  2MV2 A;  1T3X A;  3CIP G;  1D4X G;  2L72 A;  4KEF A;  5HVK B;  1SVY A;  2FH3 A;  3A5N S;  1YAG G;  4JD2 H;  2FGH A;  1CFY A;  3TU5 B;  3L50 A;  1NPH A;  1P8X A;  2HD7 A;  3EFO A;  3A5M S;  1JHW A;  2MP4 A;  1C0G S;  2NUT A;  4S10 C;  1DEJ S;  1Q8G A;  3EGX A;  2FH1 A;  4CBU G;  1T3Y A;  1MDU A;  5FAF A;  4LIZ A;  5KYY B;  5KYN A;  5KYW A;  3EGD A;  2FH4 A;  2VAC A;  1M2V B;  1T44 G;  2I2Q A;  3A5L S;  5L6W C;  2QTV A;  2KVK A;  1PCX A;  3FFK A;  1PD1 A;  1WNJ A;  5KYU B;  2XF1 A;  2FH2 A;  4PKH B;  1Q8X A;  1KCQ A;  3CJC G;  4CBW G;  1M4J A;  1NMD G;  3EG9 B;  3FG7 A;  3DAW B;  2NUP B;  4CBX G;  1RGI G;  1AK6 A;  2VIL A;  2XFA A;  1D0N A;  5A1M A;  1J72 A;  1WFS A;  2LLF A;  1SVR A;  4BEX 1;  5KYX B;  2VIK A;  1AHQ A;  2W0I A;  1NM1 G;  1TMW A;  1TVJ A;  1P8Z G;  1UDM A;  4PKG G;  4Z94 G;  3EH2 A;  3A5O S;  5HVK D;  5KYY A;  1EQY S;  1C0F S;  1F7S A;  1ESV S;  1M2V A;  3CI5 G;  1WM4 A;  3EFO B;  2FF6 G;  1T2L A;  2MOT A;  3EH1 A;  3CJB G;  1PD0 A;  2LXX A;  3DA7 A;  2NUT B;  5KYU A;  2D8B A;  3EGX B;  3FG6 A;  4KEE A;  3FFN A;  1SVQ A;  1VKK A;  3Q2B A;  1V6F A;  3EG9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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