3A5NS

Crystal structure of a dictyostelium p109a ca2+-actin in complex with human gelsolin segment 1
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
123
structure length
123
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile protein
molecule keywords Gelsolin
publication title Structural basis for actin assembly, activation of ATP hydrolysis, and delayed phosphate release
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2009-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3a5nS00
3FG6A 1AK6A 2MV2A 1CNUA 1EQYS 1T3YA 2FGHA 5DD2A 5KYUA 1WFSA 3FFKA 1KCQA 1NMDG 2QTVA 5KYWA 3CIPG 4LIZA 1H1VG 1DEJS 1X67A 4PKHB 2NUPB 5KYNA 5KYUB 5HVKD 1VFQA 2XFAA 1NPHA 4CBWG 5KYWB 1WM4A 2VACA 1M2OA 5KYXB 3FG7A 3EGDB 1NM1G 1SVYA 1YVNG 5FAFA 2VILA 3EFOB 2NUPA 2VIKA 5A1MA 1T3XA 1COFA 1P8ZG 1NLVG 1D4XG 5HVKB 1JHWA 2MP4A 5KYXA 3EG9A 1M2VB 2KVKA 3EGDA 2LJ8A 4KEFA 1Q8XA 1D0NA 1YAGG 3A5MS 4BEX1 3EFOA 4KEDA 1C0GS 3CJCG 1MDUA 3EG9B 2LXXA 1AHQA 2FH4A 3A5NS 3EGXA 2FF3A 1F7SA 4CBXG 1C0FS 1M2VA 1TVJA 1VKKA 2FH2A 1AK7A 2L72A 2W0IA 2FH1A 5IVUA 4PKIG 1HQZ1 1QPVA 1PD0A 4PKGG 1ESVS 5L6WC 3EGXB 2NUTB 1RGIG 1SVRA 2HD7A 1Q8GA 5KYYA 3EH1A 1T44G 1UDMA 2FH3A 4Z94G 1SVQA 4KEEA 1J72A 3A5OS 1CFYA 3L50A 3A5LS 1WNJA 5KYYB 2D8BA 2NUTA 1PD1A 1TMWA 2MOTA 1V6FA 2I2QA 3EH2A 3CI5G 3CJBG 1M4JA 4JD2H 2XF1A 3TU5B 3FFNA 3DAWB 4S10C 4CBUG 5FAEA 1P8XA 1PCXA 3Q2BA 1T2LA 2LLFA 2FF6G
chains in the Genus database with same CATH superfamily
3FG6A 1AK6A 2MV2A 1CNUA 1EQYS 1T3YA 2FGHA 5DD2A 5KYUA 1WFSA 3FFKA 1KCQA 1NMDG 2QTVA 5KYWA 3CIPG 4LIZA 1H1VG 1DEJS 1X67A 4PKHB 2NUPB 5KYNA 5KYUB 5HVKD 1VFQA 2XFAA 1NPHA 4CBWG 5KYWB 1WM4A 2VACA 1M2OA 5KYXB 3FG7A 3EGDB 1NM1G 1SVYA 1YVNG 5FAFA 2VILA 3EFOB 2NUPA 2VIKA 3DA7A 5A1MA 1T3XA 1COFA 1P8ZG 1NLVG 1D4XG 5HVKB 1JHWA 2MP4A 5KYXA 3EG9A 1M2VB 2KVKA 3EGDA 2LJ8A 4KEFA 1Q8XA 1D0NA 1YAGG 3A5MS 4BEX1 3EFOA 4KEDA 1C0GS 3CJCG 1MDUA 3EG9B 2LXXA 1AHQA 2FH4A 3A5NS 3EGXA 2FF3A 1F7SA 4CBXG 1C0FS 1M2VA 1TVJA 1VKKA 2FH2A 1AK7A 2L72A 2W0IA 2FH1A 5IVUA 4PKIG 1HQZ1 1QPVA 1PD0A 4PKGG 1ESVS 5L6WC 3EGXB 2NUTB 1RGIG 1SVRA 2HD7A 1Q8GA 5KYYA 3EH1A 1T44G 1UDMA 2FH3A 4Z94G 1SVQA 4KEEA 1J72A 3A5OS 1CFYA 3L50A 3A5LS 1WNJA 5KYYB 2D8BA 2NUTA 1PD1A 1TMWA 2MOTA 1V6FA 2I2QA 3EH2A 3CI5G 3CJBG 1M4JA 4JD2H 2XF1A 3TU5B 3FFNA 3DAWB 4S10C 4CBUG 5FAEA 1P8XA 1PCXA 3Q2BA 1T2LA 2LLFA 2FF6G
chains in the Genus database with same CATH topology
3FG6A 1AK6A 2MV2A 1CNUA 1EQYS 1T3YA 2FGHA 5DD2A 5KYUA 1WFSA 3FFKA 1KCQA 1NMDG 2QTVA 5KYWA 3CIPG 4LIZA 1H1VG 1DEJS 1X67A 4PKHB 2NUPB 5KYNA 5KYUB 5HVKD 1VFQA 2XFAA 1NPHA 4CBWG 5KYWB 1WM4A 2VACA 1M2OA 5KYXB 3FG7A 3EGDB 1NM1G 1SVYA 1YVNG 5FAFA 2VILA 3EFOB 2NUPA 2VIKA 3DA7A 5A1MA 1T3XA 1COFA 1P8ZG 1NLVG 1D4XG 5HVKB 1JHWA 2MP4A 5KYXA 3EG9A 1M2VB 2KVKA 3EGDA 2LJ8A 4KEFA 1Q8XA 1D0NA 1YAGG 3A5MS 4BEX1 3EFOA 4KEDA 1C0GS 3CJCG 1MDUA 3EG9B 2LXXA 1AHQA 2FH4A 3A5NS 3EGXA 2FF3A 1F7SA 4CBXG 1C0FS 1M2VA 1TVJA 1VKKA 2FH2A 1AK7A 2L72A 2W0IA 2FH1A 5IVUA 4PKIG 1HQZ1 1QPVA 1PD0A 4PKGG 1ESVS 5L6WC 3EGXB 2NUTB 1RGIG 1SVRA 2HD7A 1Q8GA 5KYYA 3EH1A 1T44G 1UDMA 2FH3A 4Z94G 1SVQA 4KEEA 1J72A 3A5OS 1CFYA 3L50A 3A5LS 1WNJA 5KYYB 2D8BA 2NUTA 1PD1A 1TMWA 2MOTA 1V6FA 2I2QA 3EH2A 3CI5G 3CJBG 1M4JA 4JD2H 2XF1A 3TU5B 3FFNA 3DAWB 4S10C 4CBUG 5FAEA 1P8XA 1PCXA 3Q2BA 1T2LA 2LLFA 2FF6G
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FG6 A;  1AK6 A;  2MV2 A;  1CNU A;  1EQY S;  1T3Y A;  2FGH A;  5DD2 A;  5KYU A;  1WFS A;  3FFK A;  1KCQ A;  1NMD G;  2QTV A;  5KYW A;  3CIP G;  4LIZ A;  1H1V G;  1DEJ S;  1X67 A;  4PKH B;  2NUP B;  5KYN A;  5KYU B;  5HVK D;  1VFQ A;  2XFA A;  1NPH A;  4CBW G;  5KYW B;  1WM4 A;  2VAC A;  1M2O A;  5KYX B;  3FG7 A;  3EGD B;  1NM1 G;  1SVY A;  1YVN G;  5FAF A;  2VIL A;  3EFO B;  2NUP A;  2VIK A;  5A1M A;  1T3X A;  1COF A;  1P8Z G;  1NLV G;  1D4X G;  5HVK B;  1JHW A;  2MP4 A;  5KYX A;  3EG9 A;  1M2V B;  2KVK A;  3EGD A;  2LJ8 A;  4KEF A;  1Q8X A;  1D0N A;  1YAG G;  3A5M S;  4BEX 1;  3EFO A;  4KED A;  1C0G S;  3CJC G;  1MDU A;  3EG9 B;  2LXX A;  1AHQ A;  2FH4 A;  3A5N S;  3EGX A;  2FF3 A;  1F7S A;  4CBX G;  1C0F S;  1M2V A;  1TVJ A;  1VKK A;  2FH2 A;  1AK7 A;  2L72 A;  2W0I A;  2FH1 A;  5IVU A;  4PKI G;  1HQZ 1;  1QPV A;  1PD0 A;  4PKG G;  1ESV S;  5L6W C;  3EGX B;  2NUT B;  1RGI G;  1SVR A;  2HD7 A;  1Q8G A;  5KYY A;  3EH1 A;  1T44 G;  1UDM A;  2FH3 A;  4Z94 G;  1SVQ A;  4KEE A;  1J72 A;  3A5O S;  1CFY A;  3L50 A;  3A5L S;  1WNJ A;  5KYY B;  2D8B A;  2NUT A;  1PD1 A;  1TMW A;  2MOT A;  1V6F A;  2I2Q A;  3EH2 A;  3CI5 G;  3CJB G;  1M4J A;  4JD2 H;  2XF1 A;  3TU5 B;  3FFN A;  3DAW B;  4S10 C;  4CBU G;  5FAE A;  1P8X A;  1PCX A;  3Q2B A;  1T2L A;  2LLF A;  2FF6 G; 
#chains in the Genus database with same CATH topology
 3FG6 A;  1AK6 A;  2MV2 A;  1CNU A;  1EQY S;  1T3Y A;  2FGH A;  5DD2 A;  5KYU A;  1WFS A;  3FFK A;  1KCQ A;  1NMD G;  2QTV A;  5KYW A;  3CIP G;  4LIZ A;  1H1V G;  1DEJ S;  1X67 A;  4PKH B;  2NUP B;  5KYN A;  5KYU B;  5HVK D;  1VFQ A;  2XFA A;  1NPH A;  4CBW G;  5KYW B;  1WM4 A;  2VAC A;  1M2O A;  5KYX B;  3FG7 A;  3EGD B;  1NM1 G;  1SVY A;  1YVN G;  5FAF A;  2VIL A;  3EFO B;  2NUP A;  2VIK A;  3DA7 A;  5A1M A;  1T3X A;  1COF A;  1P8Z G;  1NLV G;  1D4X G;  5HVK B;  1JHW A;  2MP4 A;  5KYX A;  3EG9 A;  1M2V B;  2KVK A;  3EGD A;  2LJ8 A;  4KEF A;  1Q8X A;  1D0N A;  1YAG G;  3A5M S;  4BEX 1;  3EFO A;  4KED A;  1C0G S;  3CJC G;  1MDU A;  3EG9 B;  2LXX A;  1AHQ A;  2FH4 A;  3A5N S;  3EGX A;  2FF3 A;  1F7S A;  4CBX G;  1C0F S;  1M2V A;  1TVJ A;  1VKK A;  2FH2 A;  1AK7 A;  2L72 A;  2W0I A;  2FH1 A;  5IVU A;  4PKI G;  1HQZ 1;  1QPV A;  1PD0 A;  4PKG G;  1ESV S;  5L6W C;  3EGX B;  2NUT B;  1RGI G;  1SVR A;  2HD7 A;  1Q8G A;  5KYY A;  3EH1 A;  1T44 G;  1UDM A;  2FH3 A;  4Z94 G;  1SVQ A;  4KEE A;  1J72 A;  3A5O S;  1CFY A;  3L50 A;  3A5L S;  1WNJ A;  5KYY B;  2D8B A;  2NUT A;  1PD1 A;  1TMW A;  2MOT A;  1V6F A;  2I2Q A;  3EH2 A;  3CI5 G;  3CJB G;  1M4J A;  4JD2 H;  2XF1 A;  3TU5 B;  3FFN A;  3DAW B;  4S10 C;  4CBU G;  5FAE A;  1P8X A;  1PCX A;  3Q2B A;  1T2L A;  2LLF A;  2FF6 G; 
#chains in the Genus database with same CATH homology
 3FG6 A;  1AK6 A;  2MV2 A;  1CNU A;  1EQY S;  1T3Y A;  2FGH A;  5DD2 A;  5KYU A;  1WFS A;  3FFK A;  1KCQ A;  1NMD G;  2QTV A;  5KYW A;  3CIP G;  4LIZ A;  1H1V G;  1DEJ S;  1X67 A;  4PKH B;  2NUP B;  5KYN A;  5KYU B;  5HVK D;  1VFQ A;  2XFA A;  1NPH A;  4CBW G;  5KYW B;  1WM4 A;  2VAC A;  1M2O A;  5KYX B;  3FG7 A;  3EGD B;  1NM1 G;  1SVY A;  1YVN G;  5FAF A;  2VIL A;  3EFO B;  2NUP A;  2VIK A;  3DA7 A;  5A1M A;  1T3X A;  1COF A;  1P8Z G;  1NLV G;  1D4X G;  5HVK B;  1JHW A;  2MP4 A;  5KYX A;  3EG9 A;  1M2V B;  2KVK A;  3EGD A;  2LJ8 A;  4KEF A;  1Q8X A;  1D0N A;  1YAG G;  3A5M S;  4BEX 1;  3EFO A;  4KED A;  1C0G S;  3CJC G;  1MDU A;  3EG9 B;  2LXX A;  1AHQ A;  2FH4 A;  3A5N S;  3EGX A;  2FF3 A;  1F7S A;  4CBX G;  1C0F S;  1M2V A;  1TVJ A;  1VKK A;  2FH2 A;  1AK7 A;  2L72 A;  2W0I A;  2FH1 A;  5IVU A;  4PKI G;  1HQZ 1;  1QPV A;  1PD0 A;  4PKG G;  1ESV S;  5L6W C;  3EGX B;  2NUT B;  1RGI G;  1SVR A;  2HD7 A;  1Q8G A;  5KYY A;  3EH1 A;  1T44 G;  1UDM A;  2FH3 A;  4Z94 G;  1SVQ A;  4KEE A;  1J72 A;  3A5O S;  1CFY A;  3L50 A;  3A5L S;  1WNJ A;  5KYY B;  2D8B A;  2NUT A;  1PD1 A;  1TMW A;  2MOT A;  1V6F A;  2I2Q A;  3EH2 A;  3CI5 G;  3CJB G;  1M4J A;  4JD2 H;  2XF1 A;  3TU5 B;  3FFN A;  3DAW B;  4S10 C;  4CBU G;  5FAE A;  1P8X A;  1PCX A;  3Q2B A;  1T2L A;  2LLF A;  2FF6 G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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