3A5NS

Crystal structure of a dictyostelium p109a ca2+-actin in complex with human gelsolin segment 1
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
123
structure length
123
Chain Sequence
VEHPEFLKAGKEPGLQIWRVEKFDLVPVPTCLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Contractile protein
molecule keywords Gelsolin
publication title Structural basis for actin assembly, activation of ATP hydrolysis, and delayed phosphate release
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 123
sequence length 123
ec nomenclature
pdb deposition date 2009-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3a5nS00
1VFQA 3EGXB 1P8ZG 1H1VG 1T44G 2VIKA 4S10C 1NPHA 1AHQA 2FH1A 2NUTA 5KYXB 2W0IA 1DEJS 1D0NA 1X67A 1YVNG 2FH4A 2HD7A 2NUPB 3TU5B 2LLFA 1WNJA 1HQZ1 5KYWB 2MP4A 1MDUA 2I2QA 2KVKA 1Q8GA 1ESVS 5FAFA 3CIPG 1TMWA 1V6FA 3EH1A 3EH2A 1PD1A 3A5NS 1P8XA 3CJCG 1NLVG 3Q2BA 1AK6A 2MV2A 1QPVA 1SVYA 2QTVA 2FF3A 3L50A 5KYUA 5KYYA 3EGDB 4CBWG 3EFOA 2VACA 1CNUA 1J72A 5L6WC 1Q8XA 4KEEA 2LJ8A 1M2VB 1UDMA 1NM1G 3EGXA 3FG6A 1C0GS 1C0FS 2FGHA 5DD2A 5KYXA 2VILA 1COFA 2D8BA 4KEDA 4KEFA 1EQYS 2XF1A 1M4JA 1SVRA 3EG9A 4Z94G 2NUTB 5KYWA 3FFKA 5KYUB 1WFSA 1NMDG 3EFOB 3FG7A 1VKKA 4PKHB 4BEX1 4CBXG 5FAEA 1TVJA 2FF6G 2XFAA 5A1MA 3FFNA 1WM4A 1KCQA 4PKGG 5KYNA 1CFYA 1T3YA 3CI5G 4JD2H 4CBUG 2LXXA 1D4XG 1PD0A 1PCXA 1T3XA 5HVKB 3EGDA 3EG9B 2NUPA 1JHWA 1RGIG 1AK7A 5KYYB 3A5MS 3A5OS 5IVUA 3DAWB 4LIZA 4PKIG 1T2LA 3A5LS 1M2VA 1SVQA 1YAGG 1F7SA 2FH3A 3CJBG 1M2OA 5HVKD 2FH2A 2MOTA 2L72A
chains in the Genus database with same CATH superfamily
1VFQA 3EGXB 1P8ZG 1H1VG 1T44G 2VIKA 4S10C 1NPHA 1AHQA 2FH1A 2NUTA 5KYXB 2W0IA 1DEJS 1D0NA 1X67A 1YVNG 2FH4A 2HD7A 3DA7A 2NUPB 3TU5B 2LLFA 1WNJA 1HQZ1 5KYWB 2MP4A 1MDUA 2I2QA 2KVKA 1Q8GA 1ESVS 5FAFA 3CIPG 1TMWA 1V6FA 3EH1A 3EH2A 1PD1A 3A5NS 1P8XA 3CJCG 1NLVG 3Q2BA 1AK6A 2MV2A 1QPVA 1SVYA 2QTVA 2FF3A 3L50A 5KYUA 5KYYA 3EGDB 4CBWG 3EFOA 2VACA 1CNUA 1J72A 5L6WC 1Q8XA 4KEEA 2LJ8A 1M2VB 1UDMA 1NM1G 3EGXA 3FG6A 1C0GS 1C0FS 2FGHA 5DD2A 5KYXA 2VILA 1COFA 2D8BA 4KEDA 4KEFA 1EQYS 2XF1A 1M4JA 1SVRA 3EG9A 4Z94G 2NUTB 5KYWA 3FFKA 5KYUB 1WFSA 1NMDG 3EFOB 3FG7A 1VKKA 4PKHB 4BEX1 4CBXG 5FAEA 1TVJA 2FF6G 2XFAA 5A1MA 3FFNA 1WM4A 1KCQA 4PKGG 5KYNA 1CFYA 1T3YA 3CI5G 4JD2H 4CBUG 2LXXA 1D4XG 1PD0A 1PCXA 1T3XA 5HVKB 3EGDA 3EG9B 2NUPA 1JHWA 1RGIG 1AK7A 5KYYB 3A5MS 3A5OS 5IVUA 3DAWB 4LIZA 4PKIG 1T2LA 3A5LS 1M2VA 1SVQA 1YAGG 1F7SA 2FH3A 3CJBG 1M2OA 5HVKD 2FH2A 2MOTA 2L72A
chains in the Genus database with same CATH topology
1VFQA 3EGXB 1P8ZG 1H1VG 1T44G 2VIKA 4S10C 1NPHA 1AHQA 2FH1A 2NUTA 5KYXB 2W0IA 1DEJS 1D0NA 1X67A 1YVNG 2FH4A 2HD7A 3DA7A 2NUPB 3TU5B 2LLFA 1WNJA 1HQZ1 5KYWB 2MP4A 1MDUA 2I2QA 2KVKA 1Q8GA 1ESVS 5FAFA 3CIPG 1TMWA 1V6FA 3EH1A 3EH2A 1PD1A 3A5NS 1P8XA 3CJCG 1NLVG 3Q2BA 1AK6A 2MV2A 1QPVA 1SVYA 2QTVA 2FF3A 3L50A 5KYUA 5KYYA 3EGDB 4CBWG 3EFOA 2VACA 1CNUA 1J72A 5L6WC 1Q8XA 4KEEA 2LJ8A 1M2VB 1UDMA 1NM1G 3EGXA 3FG6A 1C0GS 1C0FS 2FGHA 5DD2A 5KYXA 2VILA 1COFA 2D8BA 4KEDA 4KEFA 1EQYS 2XF1A 1M4JA 1SVRA 3EG9A 4Z94G 2NUTB 5KYWA 3FFKA 5KYUB 1WFSA 1NMDG 3EFOB 3FG7A 1VKKA 4PKHB 4BEX1 4CBXG 5FAEA 1TVJA 2FF6G 2XFAA 5A1MA 3FFNA 1WM4A 1KCQA 4PKGG 5KYNA 1CFYA 1T3YA 3CI5G 4JD2H 4CBUG 2LXXA 1D4XG 1PD0A 1PCXA 1T3XA 5HVKB 3EGDA 3EG9B 2NUPA 1JHWA 1RGIG 1AK7A 5KYYB 3A5MS 3A5OS 5IVUA 3DAWB 4LIZA 4PKIG 1T2LA 3A5LS 1M2VA 1SVQA 1YAGG 1F7SA 2FH3A 3CJBG 1M2OA 5HVKD 2FH2A 2MOTA 2L72A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VFQ A;  3EGX B;  1P8Z G;  1H1V G;  1T44 G;  2VIK A;  4S10 C;  1NPH A;  1AHQ A;  2FH1 A;  2NUT A;  5KYX B;  2W0I A;  1DEJ S;  1D0N A;  1X67 A;  1YVN G;  2FH4 A;  2HD7 A;  2NUP B;  3TU5 B;  2LLF A;  1WNJ A;  1HQZ 1;  5KYW B;  2MP4 A;  1MDU A;  2I2Q A;  2KVK A;  1Q8G A;  1ESV S;  5FAF A;  3CIP G;  1TMW A;  1V6F A;  3EH1 A;  3EH2 A;  1PD1 A;  3A5N S;  1P8X A;  3CJC G;  1NLV G;  3Q2B A;  1AK6 A;  2MV2 A;  1QPV A;  1SVY A;  2QTV A;  2FF3 A;  3L50 A;  5KYU A;  5KYY A;  3EGD B;  4CBW G;  3EFO A;  2VAC A;  1CNU A;  1J72 A;  5L6W C;  1Q8X A;  4KEE A;  2LJ8 A;  1M2V B;  1UDM A;  1NM1 G;  3EGX A;  3FG6 A;  1C0G S;  1C0F S;  2FGH A;  5DD2 A;  5KYX A;  2VIL A;  1COF A;  2D8B A;  4KED A;  4KEF A;  1EQY S;  2XF1 A;  1M4J A;  1SVR A;  3EG9 A;  4Z94 G;  2NUT B;  5KYW A;  3FFK A;  5KYU B;  1WFS A;  1NMD G;  3EFO B;  3FG7 A;  1VKK A;  4PKH B;  4BEX 1;  4CBX G;  5FAE A;  1TVJ A;  2FF6 G;  2XFA A;  5A1M A;  3FFN A;  1WM4 A;  1KCQ A;  4PKG G;  5KYN A;  1CFY A;  1T3Y A;  3CI5 G;  4JD2 H;  4CBU G;  2LXX A;  1D4X G;  1PD0 A;  1PCX A;  1T3X A;  5HVK B;  3EGD A;  3EG9 B;  2NUP A;  1JHW A;  1RGI G;  1AK7 A;  5KYY B;  3A5M S;  3A5O S;  5IVU A;  3DAW B;  4LIZ A;  4PKI G;  1T2L A;  3A5L S;  1M2V A;  1SVQ A;  1YAG G;  1F7S A;  2FH3 A;  3CJB G;  1M2O A;  5HVK D;  2FH2 A;  2MOT A;  2L72 A; 
#chains in the Genus database with same CATH topology
 1VFQ A;  3EGX B;  1P8Z G;  1H1V G;  1T44 G;  2VIK A;  4S10 C;  1NPH A;  1AHQ A;  2FH1 A;  2NUT A;  5KYX B;  2W0I A;  1DEJ S;  1D0N A;  1X67 A;  1YVN G;  2FH4 A;  2HD7 A;  3DA7 A;  2NUP B;  3TU5 B;  2LLF A;  1WNJ A;  1HQZ 1;  5KYW B;  2MP4 A;  1MDU A;  2I2Q A;  2KVK A;  1Q8G A;  1ESV S;  5FAF A;  3CIP G;  1TMW A;  1V6F A;  3EH1 A;  3EH2 A;  1PD1 A;  3A5N S;  1P8X A;  3CJC G;  1NLV G;  3Q2B A;  1AK6 A;  2MV2 A;  1QPV A;  1SVY A;  2QTV A;  2FF3 A;  3L50 A;  5KYU A;  5KYY A;  3EGD B;  4CBW G;  3EFO A;  2VAC A;  1CNU A;  1J72 A;  5L6W C;  1Q8X A;  4KEE A;  2LJ8 A;  1M2V B;  1UDM A;  1NM1 G;  3EGX A;  3FG6 A;  1C0G S;  1C0F S;  2FGH A;  5DD2 A;  5KYX A;  2VIL A;  1COF A;  2D8B A;  4KED A;  4KEF A;  1EQY S;  2XF1 A;  1M4J A;  1SVR A;  3EG9 A;  4Z94 G;  2NUT B;  5KYW A;  3FFK A;  5KYU B;  1WFS A;  1NMD G;  3EFO B;  3FG7 A;  1VKK A;  4PKH B;  4BEX 1;  4CBX G;  5FAE A;  1TVJ A;  2FF6 G;  2XFA A;  5A1M A;  3FFN A;  1WM4 A;  1KCQ A;  4PKG G;  5KYN A;  1CFY A;  1T3Y A;  3CI5 G;  4JD2 H;  4CBU G;  2LXX A;  1D4X G;  1PD0 A;  1PCX A;  1T3X A;  5HVK B;  3EGD A;  3EG9 B;  2NUP A;  1JHW A;  1RGI G;  1AK7 A;  5KYY B;  3A5M S;  3A5O S;  5IVU A;  3DAW B;  4LIZ A;  4PKI G;  1T2L A;  3A5L S;  1M2V A;  1SVQ A;  1YAG G;  1F7S A;  2FH3 A;  3CJB G;  1M2O A;  5HVK D;  2FH2 A;  2MOT A;  2L72 A; 
#chains in the Genus database with same CATH homology
 1VFQ A;  3EGX B;  1P8Z G;  1H1V G;  1T44 G;  2VIK A;  4S10 C;  1NPH A;  1AHQ A;  2FH1 A;  2NUT A;  5KYX B;  2W0I A;  1DEJ S;  1D0N A;  1X67 A;  1YVN G;  2FH4 A;  2HD7 A;  3DA7 A;  2NUP B;  3TU5 B;  2LLF A;  1WNJ A;  1HQZ 1;  5KYW B;  2MP4 A;  1MDU A;  2I2Q A;  2KVK A;  1Q8G A;  1ESV S;  5FAF A;  3CIP G;  1TMW A;  1V6F A;  3EH1 A;  3EH2 A;  1PD1 A;  3A5N S;  1P8X A;  3CJC G;  1NLV G;  3Q2B A;  1AK6 A;  2MV2 A;  1QPV A;  1SVY A;  2QTV A;  2FF3 A;  3L50 A;  5KYU A;  5KYY A;  3EGD B;  4CBW G;  3EFO A;  2VAC A;  1CNU A;  1J72 A;  5L6W C;  1Q8X A;  4KEE A;  2LJ8 A;  1M2V B;  1UDM A;  1NM1 G;  3EGX A;  3FG6 A;  1C0G S;  1C0F S;  2FGH A;  5DD2 A;  5KYX A;  2VIL A;  1COF A;  2D8B A;  4KED A;  4KEF A;  1EQY S;  2XF1 A;  1M4J A;  1SVR A;  3EG9 A;  4Z94 G;  2NUT B;  5KYW A;  3FFK A;  5KYU B;  1WFS A;  1NMD G;  3EFO B;  3FG7 A;  1VKK A;  4PKH B;  4BEX 1;  4CBX G;  5FAE A;  1TVJ A;  2FF6 G;  2XFA A;  5A1M A;  3FFN A;  1WM4 A;  1KCQ A;  4PKG G;  5KYN A;  1CFY A;  1T3Y A;  3CI5 G;  4JD2 H;  4CBU G;  2LXX A;  1D4X G;  1PD0 A;  1PCX A;  1T3X A;  5HVK B;  3EGD A;  3EG9 B;  2NUP A;  1JHW A;  1RGI G;  1AK7 A;  5KYY B;  3A5M S;  3A5O S;  5IVU A;  3DAW B;  4LIZ A;  4PKI G;  1T2L A;  3A5L S;  1M2V A;  1SVQ A;  1YAG G;  1F7S A;  2FH3 A;  3CJB G;  1M2O A;  5HVK D;  2FH2 A;  2MOT A;  2L72 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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