3A6QA

E13t mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNTGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords FMN-binding protein
publication title Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein.
pubmed doi rcsb
source organism Desulfovibrio vulgaris
total genus 27
structure length 122
sequence length 122
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3a6qA00
2RE7A 4HMXA 1W3PA 4HX6A 3KYGA 3TGVA 3DB0A 1YOAA 2IMLA 1VL7A 4Y9IA 1W3OA 2RDEA 4XHYA 4Z85A 3B5MA 2QEAA 3AMFA 3FKHA 1USCA 1USFA 3VYAA 3VY2A 1G77A 3CB0A 3BPKA 3K86A 4HMTA 2I51A 2ECUA 3GASA 3K88A 1RZ1A 1CI0A 4F07A 1RFEA 4IRAA 3KYFA 1I0SA 2R0XA 2AQ6A 4QVBA 1AXJA 2ECRA 2FURA 3U34A 1XXOA 1Y30A 3F7EA 2X1KA 4HMSA 2OU5A 5CHEC 3SWJA 2E83A 5CHOA 3BA3A 2D5MA 3EC6A 3U5WA 1JNWA 1WV4A 1WGBA 3E4VA 2HQ7A 3FGEA 2I02A 3A20A 3ZOFA 4YBNA 2NR4A 3AWHA 1W3RA 2D38A 2HTDA 1RZ0A 3ZOGA 1W3QA 1EJEA 3VY5A 5ESCA 2D37A 3DMBA 3IN6A 2Q9KA 3BNKA 3DNHA 3HMZA 2HHZA 1I0RA 4N7RC 2IG6A 4L82A 3R5PA 1W9AA 3R5ZA 4HMUA 2GJGA 3R5YA 2HTIA 2D36A 3CP3A 3A6RA 3HY8A 3R5RA 3R5WA 4HMVA 4HMWA 3ZOEA 1NRGA 1T9MA 2IABA 2VPAA 3R5LA 4ZKYA 2FHQA 1FLMA 1G76A 2R6VA 3H96A 3ZODA 1TY9A 3U0IA 1WLIA 3ZOCA 2ASFA 2ED4A 2QCKA 2X1JA 1XHNA 1WLKA 2FG9A 1G78A 3K87A 1G79A 3RH7A 3NFWA 1YLNA 5JABA 2PTFA 2A2JA 3U35A 3PFTA 4R82A 1DNLA 2OL5A 5BNCA 4YWNA 2ARZA 3A6QA 2HQ9A 3ZOHA 4XJ2A
chains in the Genus database with same CATH superfamily
2RE7A 4HMXA 1W3PA 4HX6A 3KYGA 3TGVA 3DB0A 1YOAA 2IMLA 1VL7A 4Y9IA 1W3OA 2RDEA 4XHYA 4Z85A 3B5MA 2QEAA 3AMFA 3FKHA 1USCA 1USFA 3VYAA 3VY2A 1G77A 3CB0A 3BPKA 3K86A 4UHVA 4HMTA 2I51A 2ECUA 3GASA 3K88A 1RZ1A 1CI0A 4F07A 1RFEA 4IRAA 3KYFA 1I0SA 2R0XA 2AQ6A 4QVBA 1AXJA 2ECRA 2FURA 3U34A 1XXOA 1Y30A 3F7EA 2X1KA 4HMSA 2OU5A 5CHEC 3SWJA 2E83A 5CHOA 3EAAA 1Y12A 3BA3A 2D5MA 3EC6A 3U5WA 1JNWA 1WV4A 1WGBA 3E4VA 2HQ7A 3FGEA 2I02A 3A20A 3ZOFA 4YBNA 2NR4A 3AWHA 1W3RA 2D38A 2HTDA 1RZ0A 3ZOGA 1W3QA 1EJEA 3VY5A 5ESCA 2D37A 3DMBA 2GUJA 2Q9KA 3IN6A 3BNKA 3DNHA 2P5ZX 3HMZA 2HHZA 1I0RA 4N7RC 2IG6A 4L82A 4W64A 3R5PA 1W9AA 3R5ZA 4HMUA 4MTKA 2GJGA 3R5YA 2HTIA 3HE1A 2D36A 3CP3A 3A6RA 3HY8A 3R5RA 3R5WA 4HMVA 4HMWA 3ZOEA 2K4QA 1NRGA 1T9MA 2IABA 2VPAA 3R5LA 4ZKYA 2FHQA 1FLMA 3V4HA 1G76A 2R6VA 3H96A 3ZODA 1TY9A 3U0IA 1WLIA 3ZOCA 2ASFA 2ED4A 2QCKA 2X1JA 1XHNA 1WLKA 2FG9A 1G78A 3K87A 1G79A 3RH7A 4TV4A 3NFWA 1YLNA 5JABA 2PTFA 2A2JA 3U35A 3PFTA 4R82A 4HKHA 1DNLA 2OL5A 5BNCA 4YWNA 2ARZA 3A6QA 2HQ9A 2L1TA 3ZOHA 4XJ2A
chains in the Genus database with same CATH topology
2RE7A 4HMXA 1W3PA 4HX6A 3KYGA 3TGVA 3DB0A 1YOAA 2IMLA 1VL7A 4Y9IA 1W3OA 2RDEA 4XHYA 4Z85A 3B5MA 2QEAA 3AMFA 3FKHA 1USCA 1USFA 3VYAA 3VY2A 1G77A 3CB0A 3BPKA 3K86A 4HMTA 2I51A 2ECUA 3GASA 3K88A 1RZ1A 1CI0A 4F07A 1RFEA 4IRAA 3KYFA 1I0SA 2R0XA 2AQ6A 4QVBA 1AXJA 2ECRA 2FURA 3U34A 1XXOA 1Y30A 3F7EA 2X1KA 4HMSA 2OU5A 5CHEC 3SWJA 2E83A 5CHOA 3BA3A 2D5MA 3EC6A 3U5WA 1JNWA 1WV4A 1WGBA 3E4VA 2HQ7A 3FGEA 2I02A 3A20A 3ZOFA 4YBNA 2NR4A 3AWHA 1W3RA 2D38A 2HTDA 1RZ0A 3ZOGA 1W3QA 1EJEA 3VY5A 5ESCA 2D37A 3DMBA 3IN6A 2Q9KA 3BNKA 3DNHA 3HMZA 2HHZA 1I0RA 4N7RC 2IG6A 4L82A 3R5PA 1W9AA 3R5ZA 4HMUA 2GJGA 3R5YA 2HTIA 2D36A 3CP3A 3A6RA 3HY8A 3R5RA 3R5WA 4HMVA 4HMWA 3ZOEA 1NRGA 1T9MA 2IABA 2VPAA 3R5LA 4ZKYA 2FHQA 1FLMA 1G76A 2R6VA 3H96A 3ZODA 1TY9A 3U0IA 1WLIA 3ZOCA 2ASFA 2ED4A 2QCKA 2X1JA 1XHNA 1WLKA 2FG9A 1G78A 3K87A 1G79A 3RH7A 3NFWA 1YLNA 5JABA 2PTFA 2A2JA 3U35A 3PFTA 4R82A 1DNLA 2OL5A 5BNCA 4YWNA 2ARZA 3A6QA 2HQ9A 3ZOHA 4XJ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RE7 A;  4HMX A;  1W3P A;  4HX6 A;  3KYG A;  3TGV A;  3DB0 A;  1YOA A;  2IML A;  1VL7 A;  4Y9I A;  1W3O A;  2RDE A;  4XHY A;  4Z85 A;  3B5M A;  2QEA A;  3AMF A;  3FKH A;  1USC A;  1USF A;  3VYA A;  3VY2 A;  1G77 A;  3CB0 A;  3BPK A;  3K86 A;  4HMT A;  2I51 A;  2ECU A;  3GAS A;  3K88 A;  1RZ1 A;  1CI0 A;  4F07 A;  1RFE A;  4IRA A;  3KYF A;  1I0S A;  2R0X A;  2AQ6 A;  4QVB A;  1AXJ A;  2ECR A;  2FUR A;  3U34 A;  1XXO A;  1Y30 A;  3F7E A;  2X1K A;  4HMS A;  2OU5 A;  5CHE C;  3SWJ A;  2E83 A;  5CHO A;  3BA3 A;  2D5M A;  3EC6 A;  3U5W A;  1JNW A;  1WV4 A;  1WGB A;  3E4V A;  2HQ7 A;  3FGE A;  2I02 A;  3A20 A;  3ZOF A;  4YBN A;  2NR4 A;  3AWH A;  1W3R A;  2D38 A;  2HTD A;  1RZ0 A;  3ZOG A;  1W3Q A;  1EJE A;  3VY5 A;  5ESC A;  2D37 A;  3DMB A;  3IN6 A;  2Q9K A;  3BNK A;  3DNH A;  3HMZ A;  2HHZ A;  1I0R A;  4N7R C;  2IG6 A;  4L82 A;  3R5P A;  1W9A A;  3R5Z A;  4HMU A;  2GJG A;  3R5Y A;  2HTI A;  2D36 A;  3CP3 A;  3A6R A;  3HY8 A;  3R5R A;  3R5W A;  4HMV A;  4HMW A;  3ZOE A;  1NRG A;  1T9M A;  2IAB A;  2VPA A;  3R5L A;  4ZKY A;  2FHQ A;  1FLM A;  1G76 A;  2R6V A;  3H96 A;  3ZOD A;  1TY9 A;  3U0I A;  1WLI A;  3ZOC A;  2ASF A;  2ED4 A;  2QCK A;  2X1J A;  1XHN A;  1WLK A;  2FG9 A;  1G78 A;  3K87 A;  1G79 A;  3RH7 A;  3NFW A;  1YLN A;  5JAB A;  2PTF A;  2A2J A;  3U35 A;  3PFT A;  4R82 A;  1DNL A;  2OL5 A;  5BNC A;  4YWN A;  2ARZ A;  3A6Q A;  2HQ9 A;  3ZOH A;  4XJ2 A; 
#chains in the Genus database with same CATH topology
 2RE7 A;  4HMX A;  1W3P A;  4HX6 A;  3KYG A;  3TGV A;  3DB0 A;  1YOA A;  2IML A;  1VL7 A;  4Y9I A;  1W3O A;  2RDE A;  4XHY A;  4Z85 A;  3B5M A;  2QEA A;  3AMF A;  3FKH A;  1USC A;  1USF A;  3VYA A;  3VY2 A;  1G77 A;  3CB0 A;  3BPK A;  3K86 A;  4UHV A;  4HMT A;  2I51 A;  2ECU A;  3GAS A;  3K88 A;  1RZ1 A;  1CI0 A;  4F07 A;  1RFE A;  4IRA A;  3KYF A;  1I0S A;  2R0X A;  2AQ6 A;  4QVB A;  1AXJ A;  2ECR A;  2FUR A;  3U34 A;  1XXO A;  1Y30 A;  3F7E A;  2X1K A;  4HMS A;  2OU5 A;  5CHE C;  3SWJ A;  2E83 A;  5CHO A;  3EAA A;  1Y12 A;  3BA3 A;  2D5M A;  3EC6 A;  3U5W A;  1JNW A;  1WV4 A;  1WGB A;  3E4V A;  2HQ7 A;  3FGE A;  2I02 A;  3A20 A;  3ZOF A;  4YBN A;  2NR4 A;  3AWH A;  1W3R A;  2D38 A;  2HTD A;  1RZ0 A;  3ZOG A;  1W3Q A;  1EJE A;  3VY5 A;  5ESC A;  2D37 A;  3DMB A;  2GUJ A;  2Q9K A;  3IN6 A;  3BNK A;  3DNH A;  2P5Z X;  3HMZ A;  2HHZ A;  1I0R A;  4N7R C;  2IG6 A;  4L82 A;  4W64 A;  3R5P A;  1W9A A;  3R5Z A;  4HMU A;  4MTK A;  2GJG A;  3R5Y A;  2HTI A;  3HE1 A;  2D36 A;  3CP3 A;  3A6R A;  3HY8 A;  3R5R A;  3R5W A;  4HMV A;  4HMW A;  3ZOE A;  2K4Q A;  1NRG A;  1T9M A;  2IAB A;  2VPA A;  3R5L A;  4ZKY A;  2FHQ A;  1FLM A;  3V4H A;  1G76 A;  2R6V A;  3H96 A;  3ZOD A;  1TY9 A;  3U0I A;  1WLI A;  3ZOC A;  2ASF A;  2ED4 A;  2QCK A;  2X1J A;  1XHN A;  1WLK A;  2FG9 A;  1G78 A;  3K87 A;  1G79 A;  3RH7 A;  4TV4 A;  3NFW A;  1YLN A;  5JAB A;  2PTF A;  2A2J A;  3U35 A;  3PFT A;  4R82 A;  4HKH A;  1DNL A;  2OL5 A;  5BNC A;  4YWN A;  2ARZ A;  3A6Q A;  2HQ9 A;  2L1T A;  3ZOH A;  4XJ2 A; 
#chains in the Genus database with same CATH homology
 2RE7 A;  4HMX A;  1W3P A;  4HX6 A;  3KYG A;  3TGV A;  3DB0 A;  1YOA A;  2IML A;  1VL7 A;  4Y9I A;  1W3O A;  2RDE A;  4XHY A;  4Z85 A;  3B5M A;  2QEA A;  3AMF A;  3FKH A;  1USC A;  1USF A;  3VYA A;  3VY2 A;  1G77 A;  3CB0 A;  3BPK A;  3K86 A;  4HMT A;  2I51 A;  2ECU A;  3GAS A;  3K88 A;  1RZ1 A;  1CI0 A;  4F07 A;  1RFE A;  4IRA A;  3KYF A;  1I0S A;  2R0X A;  2AQ6 A;  4QVB A;  1AXJ A;  2ECR A;  2FUR A;  3U34 A;  1XXO A;  1Y30 A;  3F7E A;  2X1K A;  4HMS A;  2OU5 A;  5CHE C;  3SWJ A;  2E83 A;  5CHO A;  3BA3 A;  2D5M A;  3EC6 A;  3U5W A;  1JNW A;  1WV4 A;  1WGB A;  3E4V A;  2HQ7 A;  3FGE A;  2I02 A;  3A20 A;  3ZOF A;  4YBN A;  2NR4 A;  3AWH A;  1W3R A;  2D38 A;  2HTD A;  1RZ0 A;  3ZOG A;  1W3Q A;  1EJE A;  3VY5 A;  5ESC A;  2D37 A;  3DMB A;  3IN6 A;  2Q9K A;  3BNK A;  3DNH A;  3HMZ A;  2HHZ A;  1I0R A;  4N7R C;  2IG6 A;  4L82 A;  3R5P A;  1W9A A;  3R5Z A;  4HMU A;  2GJG A;  3R5Y A;  2HTI A;  2D36 A;  3CP3 A;  3A6R A;  3HY8 A;  3R5R A;  3R5W A;  4HMV A;  4HMW A;  3ZOE A;  1NRG A;  1T9M A;  2IAB A;  2VPA A;  3R5L A;  4ZKY A;  2FHQ A;  1FLM A;  1G76 A;  2R6V A;  3H96 A;  3ZOD A;  1TY9 A;  3U0I A;  1WLI A;  3ZOC A;  2ASF A;  2ED4 A;  2QCK A;  2X1J A;  1XHN A;  1WLK A;  2FG9 A;  1G78 A;  3K87 A;  1G79 A;  3RH7 A;  3NFW A;  1YLN A;  5JAB A;  2PTF A;  2A2J A;  3U35 A;  3PFT A;  4R82 A;  1DNL A;  2OL5 A;  5BNC A;  4YWN A;  2ARZ A;  3A6Q A;  2HQ9 A;  3ZOH A;  4XJ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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