3A6RA

E13q mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f)
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
122
structure length
122
Chain Sequence
MLPGTFFEVLKNQGVVAIATQGEDGPHLVNTWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSRKVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAALVITVVSAEQTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords FMN-binding protein
publication title Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein.
pubmed doi rcsb
source organism Desulfovibrio vulgaris
total genus 26
structure length 122
sequence length 122
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3a6rA00
3AMFA 4F07A 3PFTA 4Z85A 4IRAA 4L82A 3CP3A 3R5RA 1DNLA 1TY9A 2ECRA 3FGEA 1I0RA 1YOAA 3R5LA 1XXOA 1AXJA 2I02A 2QEAA 3SWJA 4QVBA 1G77A 4N7RC 1WGBA 3U5WA 4R82A 3KYGA 3R5PA 3ZOGA 2VPAA 1USCA 2D38A 2RDEA 3TGVA 4HMWA 2I51A 5CHEC 3ZOEA 1W3RA 3AWHA 2ARZA 2IMLA 2E83A 3K86A 3U35A 3A6RA 4HMTA 3RH7A 1USFA 3A20A 1G76A 2X1KA 4ZKYA 3VYAA 2PTFA 1G79A 3K88A 2R6VA 1JNWA 1FLMA 1RZ1A 2QCKA 4HMUA 1VL7A 2IG6A 2A2JA 3VY2A 3E4VA 1NRGA 2OL5A 3ZODA 2R0XA 3ZOHA 3EC6A 2AQ6A 3VY5A 2ASFA 1CI0A 2X1JA 5ESCA 3U34A 4YBNA 2GJGA 3A6QA 3B5MA 2IABA 1T9MA 3BPKA 3U0IA 3H96A 3BA3A 2D36A 4HX6A 2HTDA 5JABA 1Y30A 2FURA 1G78A 2FG9A 3FKHA 3DB0A 3K87A 1I0SA 3BNKA 4HMVA 5BNCA 3DNHA 2ECUA 4HMSA 2OU5A 3ZOFA 1WLKA 1W3QA 2Q9KA 3CB0A 2HQ9A 2D5MA 2NR4A 4XJ2A 3HMZA 1RZ0A 3KYFA 2HTIA 3DMBA 4YWNA 1W3OA 3HY8A 5CHOA 1EJEA 1W3PA 3GASA 2HQ7A 4Y9IA 3IN6A 3ZOCA 2ED4A 3R5ZA 2D37A 1YLNA 3F7EA 4XHYA 1XHNA 3R5WA 1W9AA 2FHQA 3R5YA 2RE7A 1WV4A 1RFEA 3NFWA 4HMXA 2HHZA 1WLIA
chains in the Genus database with same CATH superfamily
3AMFA 4F07A 3PFTA 4Z85A 4IRAA 4L82A 3CP3A 4HKHA 3R5RA 1DNLA 1TY9A 2ECRA 3FGEA 1I0RA 1YOAA 3HE1A 3R5LA 1XXOA 1AXJA 2I02A 2QEAA 3SWJA 4QVBA 1G77A 4N7RC 1WGBA 3U5WA 4R82A 3KYGA 3R5PA 3ZOGA 2VPAA 1USCA 2D38A 2RDEA 3TGVA 4HMWA 2I51A 2K4QA 5CHEC 3ZOEA 1W3RA 3AWHA 2ARZA 4UHVA 2IMLA 2E83A 3K86A 2L1TA 3U35A 3A6RA 4HMTA 3RH7A 3EAAA 1USFA 3A20A 1G76A 2X1KA 4ZKYA 3VYAA 2PTFA 1G79A 3K88A 2R6VA 1JNWA 1FLMA 4MTKA 1RZ1A 2QCKA 4HMUA 1VL7A 2IG6A 2A2JA 3VY2A 3E4VA 1NRGA 2OL5A 3ZODA 2R0XA 3ZOHA 3EC6A 2AQ6A 3VY5A 2ASFA 1CI0A 2X1JA 5ESCA 3U34A 4YBNA 2GJGA 3A6QA 3B5MA 2IABA 1T9MA 3BPKA 3U0IA 3H96A 2P5ZX 3BA3A 2D36A 4HX6A 2HTDA 5JABA 1Y30A 2FURA 1G78A 2FG9A 3FKHA 4TV4A 3DB0A 3K87A 1I0SA 3BNKA 4HMVA 5BNCA 3DNHA 2ECUA 4HMSA 2OU5A 3ZOFA 1WLKA 1W3QA 2Q9KA 3CB0A 2HQ9A 2D5MA 2NR4A 4XJ2A 3HMZA 1RZ0A 3KYFA 2HTIA 2GUJA 3DMBA 4YWNA 1W3OA 3HY8A 5CHOA 1EJEA 4W64A 1W3PA 3GASA 2HQ7A 4Y9IA 3IN6A 3ZOCA 2ED4A 3R5ZA 2D37A 1Y12A 1YLNA 3V4HA 3F7EA 4XHYA 1XHNA 3R5WA 1W9AA 2FHQA 3R5YA 2RE7A 1WV4A 1RFEA 3NFWA 4HMXA 2HHZA 1WLIA
chains in the Genus database with same CATH topology
3AMFA 4F07A 3PFTA 4Z85A 4IRAA 4L82A 3CP3A 3R5RA 1DNLA 1TY9A 2ECRA 3FGEA 1I0RA 1YOAA 3R5LA 1XXOA 1AXJA 2I02A 2QEAA 3SWJA 4QVBA 1G77A 4N7RC 1WGBA 3U5WA 4R82A 3KYGA 3R5PA 3ZOGA 2VPAA 1USCA 2D38A 2RDEA 3TGVA 4HMWA 2I51A 5CHEC 3ZOEA 1W3RA 3AWHA 2ARZA 2IMLA 2E83A 3K86A 3U35A 3A6RA 4HMTA 3RH7A 1USFA 3A20A 1G76A 2X1KA 4ZKYA 3VYAA 2PTFA 1G79A 3K88A 2R6VA 1JNWA 1FLMA 1RZ1A 2QCKA 4HMUA 1VL7A 2IG6A 2A2JA 3VY2A 3E4VA 1NRGA 2OL5A 3ZODA 2R0XA 3ZOHA 3EC6A 2AQ6A 3VY5A 2ASFA 1CI0A 2X1JA 5ESCA 3U34A 4YBNA 2GJGA 3A6QA 3B5MA 2IABA 1T9MA 3BPKA 3U0IA 3H96A 3BA3A 2D36A 4HX6A 2HTDA 5JABA 1Y30A 2FURA 1G78A 2FG9A 3FKHA 3DB0A 3K87A 1I0SA 3BNKA 4HMVA 5BNCA 3DNHA 2ECUA 4HMSA 2OU5A 3ZOFA 1WLKA 1W3QA 2Q9KA 3CB0A 2HQ9A 2D5MA 2NR4A 4XJ2A 3HMZA 1RZ0A 3KYFA 2HTIA 3DMBA 4YWNA 1W3OA 3HY8A 5CHOA 1EJEA 1W3PA 3GASA 2HQ7A 4Y9IA 3IN6A 3ZOCA 2ED4A 3R5ZA 2D37A 1YLNA 3F7EA 4XHYA 1XHNA 3R5WA 1W9AA 2FHQA 3R5YA 2RE7A 1WV4A 1RFEA 3NFWA 4HMXA 2HHZA 1WLIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AMF A;  4F07 A;  3PFT A;  4Z85 A;  4IRA A;  4L82 A;  3CP3 A;  3R5R A;  1DNL A;  1TY9 A;  2ECR A;  3FGE A;  1I0R A;  1YOA A;  3R5L A;  1XXO A;  1AXJ A;  2I02 A;  2QEA A;  3SWJ A;  4QVB A;  1G77 A;  4N7R C;  1WGB A;  3U5W A;  4R82 A;  3KYG A;  3R5P A;  3ZOG A;  2VPA A;  1USC A;  2D38 A;  2RDE A;  3TGV A;  4HMW A;  2I51 A;  5CHE C;  3ZOE A;  1W3R A;  3AWH A;  2ARZ A;  2IML A;  2E83 A;  3K86 A;  3U35 A;  3A6R A;  4HMT A;  3RH7 A;  1USF A;  3A20 A;  1G76 A;  2X1K A;  4ZKY A;  3VYA A;  2PTF A;  1G79 A;  3K88 A;  2R6V A;  1JNW A;  1FLM A;  1RZ1 A;  2QCK A;  4HMU A;  1VL7 A;  2IG6 A;  2A2J A;  3VY2 A;  3E4V A;  1NRG A;  2OL5 A;  3ZOD A;  2R0X A;  3ZOH A;  3EC6 A;  2AQ6 A;  3VY5 A;  2ASF A;  1CI0 A;  2X1J A;  5ESC A;  3U34 A;  4YBN A;  2GJG A;  3A6Q A;  3B5M A;  2IAB A;  1T9M A;  3BPK A;  3U0I A;  3H96 A;  3BA3 A;  2D36 A;  4HX6 A;  2HTD A;  5JAB A;  1Y30 A;  2FUR A;  1G78 A;  2FG9 A;  3FKH A;  3DB0 A;  3K87 A;  1I0S A;  3BNK A;  4HMV A;  5BNC A;  3DNH A;  2ECU A;  4HMS A;  2OU5 A;  3ZOF A;  1WLK A;  1W3Q A;  2Q9K A;  3CB0 A;  2HQ9 A;  2D5M A;  2NR4 A;  4XJ2 A;  3HMZ A;  1RZ0 A;  3KYF A;  2HTI A;  3DMB A;  4YWN A;  1W3O A;  3HY8 A;  5CHO A;  1EJE A;  1W3P A;  3GAS A;  2HQ7 A;  4Y9I A;  3IN6 A;  3ZOC A;  2ED4 A;  3R5Z A;  2D37 A;  1YLN A;  3F7E A;  4XHY A;  1XHN A;  3R5W A;  1W9A A;  2FHQ A;  3R5Y A;  2RE7 A;  1WV4 A;  1RFE A;  3NFW A;  4HMX A;  2HHZ A;  1WLI A; 
#chains in the Genus database with same CATH topology
 3AMF A;  4F07 A;  3PFT A;  4Z85 A;  4IRA A;  4L82 A;  3CP3 A;  4HKH A;  3R5R A;  1DNL A;  1TY9 A;  2ECR A;  3FGE A;  1I0R A;  1YOA A;  3HE1 A;  3R5L A;  1XXO A;  1AXJ A;  2I02 A;  2QEA A;  3SWJ A;  4QVB A;  1G77 A;  4N7R C;  1WGB A;  3U5W A;  4R82 A;  3KYG A;  3R5P A;  3ZOG A;  2VPA A;  1USC A;  2D38 A;  2RDE A;  3TGV A;  4HMW A;  2I51 A;  2K4Q A;  5CHE C;  3ZOE A;  1W3R A;  3AWH A;  2ARZ A;  4UHV A;  2IML A;  2E83 A;  3K86 A;  2L1T A;  3U35 A;  3A6R A;  4HMT A;  3RH7 A;  3EAA A;  1USF A;  3A20 A;  1G76 A;  2X1K A;  4ZKY A;  3VYA A;  2PTF A;  1G79 A;  3K88 A;  2R6V A;  1JNW A;  1FLM A;  4MTK A;  1RZ1 A;  2QCK A;  4HMU A;  1VL7 A;  2IG6 A;  2A2J A;  3VY2 A;  3E4V A;  1NRG A;  2OL5 A;  3ZOD A;  2R0X A;  3ZOH A;  3EC6 A;  2AQ6 A;  3VY5 A;  2ASF A;  1CI0 A;  2X1J A;  5ESC A;  3U34 A;  4YBN A;  2GJG A;  3A6Q A;  3B5M A;  2IAB A;  1T9M A;  3BPK A;  3U0I A;  3H96 A;  2P5Z X;  3BA3 A;  2D36 A;  4HX6 A;  2HTD A;  5JAB A;  1Y30 A;  2FUR A;  1G78 A;  2FG9 A;  3FKH A;  4TV4 A;  3DB0 A;  3K87 A;  1I0S A;  3BNK A;  4HMV A;  5BNC A;  3DNH A;  2ECU A;  4HMS A;  2OU5 A;  3ZOF A;  1WLK A;  1W3Q A;  2Q9K A;  3CB0 A;  2HQ9 A;  2D5M A;  2NR4 A;  4XJ2 A;  3HMZ A;  1RZ0 A;  3KYF A;  2HTI A;  2GUJ A;  3DMB A;  4YWN A;  1W3O A;  3HY8 A;  5CHO A;  1EJE A;  4W64 A;  1W3P A;  3GAS A;  2HQ7 A;  4Y9I A;  3IN6 A;  3ZOC A;  2ED4 A;  3R5Z A;  2D37 A;  1Y12 A;  1YLN A;  3V4H A;  3F7E A;  4XHY A;  1XHN A;  3R5W A;  1W9A A;  2FHQ A;  3R5Y A;  2RE7 A;  1WV4 A;  1RFE A;  3NFW A;  4HMX A;  2HHZ A;  1WLI A; 
#chains in the Genus database with same CATH homology
 3AMF A;  4F07 A;  3PFT A;  4Z85 A;  4IRA A;  4L82 A;  3CP3 A;  3R5R A;  1DNL A;  1TY9 A;  2ECR A;  3FGE A;  1I0R A;  1YOA A;  3R5L A;  1XXO A;  1AXJ A;  2I02 A;  2QEA A;  3SWJ A;  4QVB A;  1G77 A;  4N7R C;  1WGB A;  3U5W A;  4R82 A;  3KYG A;  3R5P A;  3ZOG A;  2VPA A;  1USC A;  2D38 A;  2RDE A;  3TGV A;  4HMW A;  2I51 A;  5CHE C;  3ZOE A;  1W3R A;  3AWH A;  2ARZ A;  2IML A;  2E83 A;  3K86 A;  3U35 A;  3A6R A;  4HMT A;  3RH7 A;  1USF A;  3A20 A;  1G76 A;  2X1K A;  4ZKY A;  3VYA A;  2PTF A;  1G79 A;  3K88 A;  2R6V A;  1JNW A;  1FLM A;  1RZ1 A;  2QCK A;  4HMU A;  1VL7 A;  2IG6 A;  2A2J A;  3VY2 A;  3E4V A;  1NRG A;  2OL5 A;  3ZOD A;  2R0X A;  3ZOH A;  3EC6 A;  2AQ6 A;  3VY5 A;  2ASF A;  1CI0 A;  2X1J A;  5ESC A;  3U34 A;  4YBN A;  2GJG A;  3A6Q A;  3B5M A;  2IAB A;  1T9M A;  3BPK A;  3U0I A;  3H96 A;  3BA3 A;  2D36 A;  4HX6 A;  2HTD A;  5JAB A;  1Y30 A;  2FUR A;  1G78 A;  2FG9 A;  3FKH A;  3DB0 A;  3K87 A;  1I0S A;  3BNK A;  4HMV A;  5BNC A;  3DNH A;  2ECU A;  4HMS A;  2OU5 A;  3ZOF A;  1WLK A;  1W3Q A;  2Q9K A;  3CB0 A;  2HQ9 A;  2D5M A;  2NR4 A;  4XJ2 A;  3HMZ A;  1RZ0 A;  3KYF A;  2HTI A;  3DMB A;  4YWN A;  1W3O A;  3HY8 A;  5CHO A;  1EJE A;  1W3P A;  3GAS A;  2HQ7 A;  4Y9I A;  3IN6 A;  3ZOC A;  2ED4 A;  3R5Z A;  2D37 A;  1YLN A;  3F7E A;  4XHY A;  1XHN A;  3R5W A;  1W9A A;  2FHQ A;  3R5Y A;  2RE7 A;  1WV4 A;  1RFE A;  3NFW A;  4HMX A;  2HHZ A;  1WLI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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