3A77A

The crystal structure of phosphorylated irf-3
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
239
structure length
230
Chain Sequence
ENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEGSGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASLENTVDLHISNSHPLLTSDQYKAYLQDLVEGMDFQGPGES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Interferon regulatory factor 3
publication title Ser386 phosphorylation of transcription factor IRF-3 induces dimerization and association with CBP/p300 without overall conformational change.
pubmed doi rcsb
source organism Homo sapiens
total genus 61
structure length 230
sequence length 239
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-09-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10401 IRF-3 Interferon-regulatory factor 3
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.10 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 3a77A00
5JERA 1DD1A 1DEVA 5JELA 1KHUA 1YGSA 3DITA 3A77A 1U7VA 1ZOQA 1G88A 1MJSA 1MK2A 1QWTA 1U7FA 5JEMA 5JEOA 1U7VB 4R9PA 3DSHA 1J2FA 1U7FB 5BVIA 1KHXA 5C4VA 5JEJA 1MR1A 5JEKA 3GMJA
chains in the Genus database with same CATH superfamily
1J4QA 1WLNA 2I2BA 5EJHA 5DHUA 1U7VA 3UOTA 3ELVA 3UNMA 1QWTA 2FF4A 3V8QA 3V7UA 3V7YA 1U0RA 1Z0UA 2AN1A 2XXSA 3UN0A 1U0TA 5DHSA 3VA1A 1KHXA 3HUEA 2PIEA 1FHRA 2I2FA 5EJFA 5JERA 4JIVD 3POAA 1K3QA 1UJXA 2Q5FA 3KT9A 1DEVA 5JELA 2KKLA 3OUNA 3V80A 1FHQA 3GQSA 3V8NA 3PFNA 1ZOQA 3V7WA 1J4OA 4HAOA 4KU0D 3V8PA 1QU5A 3HUFA 5DHRA 3PO8A 2KB4A 1J4PA 1GXCA 1J4KA 2EH0A 3MDBA 1MR1A 2XT9B 3VZCA 5EJIA 3AFOA 2JQJA 4D9VA 2AFFA 1Y3HA 2JPEA 2JKDA 3UNNA 3VPYA 2JQIA 4QCJA 3UV0A 1KHUA 4A0EA 5E50A 3A77A 1K2MA 1G88A 1MJSA 2P1RA 3T5PA 5A8IA 1U7FA 1Z0SA 4WRRA 5JEMA 4G2SA 5DHQA 1U7VB 3VZBA 5EJGA 4L02A 4R9PA 5DJOA 3DSHA 4H87A 1K2NA 3V8MA 3V8RA 3I0NA 4JIWD 1MZKA 4EJQA 2BRFA 3I6WA 1DMZA 2QV7A 1Z0ZA 5JEKA 1J4LA 1YJMA 1LGPA 2QVLA 2LC1A 3GMJA 3S40A 3FM8A 1DD1A 2KB3A 2JQLA 5DHPA 2BONA 4EGXA 2G1LA 2FEZA 3VA4A 2I2CA 1YGSA 3DITA 3I6UA 1K3JA 2CSWA 1WV3A 4A4YA 4V24A 1UHTA 2I2AA 1MK2A 2A0TA 4DY6A 5JEOA 4JONA 4WERA 1J2FA 1U7FB 3UMZA 1Y3IA 2I1WA 1G6GA 1YT5A 3HX1A 3ELSA 5BVIA 1SUWA 5C4VA 5JEJA 2I2DA 2JGRA 3VZDA 1G3GA 1LGQA 3I0MA 1K3NA 1YJ5C 2KFUA 2W3OA 1R21A 2I29A 5DHTA
chains in the Genus database with same CATH topology
1J4QA 1WLNA 1U7VA 3UOTA 3ELVA 3UNMA 1QWTA 2FF4A 2XXSA 3UN0A 3VA1A 1KHXA 3HUEA 2PIEA 1FHRA 5JERA 4JIVD 3POAA 1K3QA 1UJXA 3KT9A 1DEVA 5JELA 2KKLA 3OUNA 1FHQA 3GQSA 1ZOQA 1J4OA 4KU0D 1QU5A 3HUFA 3PO8A 2KB4A 1J4PA 1GXCA 3MDBA 1J4KA 2EH0A 1MR1A 2XT9B 3VZCA 2JQJA 4D9VA 2AFFA 2JPEA 2JKDA 3UNNA 3VPYA 2JQIA 4QCJA 3UV0A 1KHUA 4A0EA 5E50A 3A77A 1K2MA 1G88A 1MJSA 2P1RA 3T5PA 5A8IA 1U7FA 4WRRA 5JEMA 4G2SA 3VZBA 1U7VB 4L02A 4R9PA 5DJOA 3DSHA 4H87A 1K2NA 3I0NA 4JIWD 1MZKA 4EJQA 2BRFA 3I6WA 1DMZA 2QV7A 5JEKA 1J4LA 1YJMA 1LGPA 2QVLA 2LC1A 3GMJA 3S40A 3FM8A 1DD1A 2KB3A 2JQLA 4EGXA 2BONA 2G1LA 2FEZA 3VA4A 1YGSA 3DITA 3I6UA 1K3JA 2CSWA 1WV3A 4A4YA 4V24A 1UHTA 1MK2A 2A0TA 5JEOA 4JONA 4WERA 1J2FA 1U7FB 3UMZA 1G6GA 3HX1A 3ELSA 5BVIA 5C4VA 5JEJA 2JGRA 3VZDA 1G3GA 1LGQA 3I0MA 1K3NA 1YJ5C 2KFUA 2W3OA 1R21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JER A;  1DD1 A;  1DEV A;  5JEL A;  1KHU A;  1YGS A;  3DIT A;  3A77 A;  1U7V A;  1ZOQ A;  1G88 A;  1MJS A;  1MK2 A;  1QWT A;  1U7F A;  5JEM A;  5JEO A;  1U7V B;  4R9P A;  3DSH A;  1J2F A;  1U7F B;  5BVI A;  1KHX A;  5C4V A;  5JEJ A;  1MR1 A;  5JEK A;  3GMJ A; 
#chains in the Genus database with same CATH topology
 1J4Q A;  1WLN A;  2I2B A;  5EJH A;  5DHU A;  1U7V A;  3UOT A;  3ELV A;  3UNM A;  1QWT A;  2FF4 A;  3V8Q A;  3V7U A;  3V7Y A;  1U0R A;  1Z0U A;  2AN1 A;  2XXS A;  3UN0 A;  1U0T A;  5DHS A;  3VA1 A;  1KHX A;  3HUE A;  2PIE A;  1FHR A;  2I2F A;  5EJF A;  5JER A;  4JIV D;  3POA A;  1K3Q A;  1UJX A;  2Q5F A;  3KT9 A;  1DEV A;  5JEL A;  2KKL A;  3OUN A;  3V80 A;  1FHQ A;  3GQS A;  3V8N A;  3PFN A;  1ZOQ A;  3V7W A;  1J4O A;  4HAO A;  4KU0 D;  3V8P A;  1QU5 A;  3HUF A;  5DHR A;  3PO8 A;  2KB4 A;  1J4P A;  1GXC A;  1J4K A;  2EH0 A;  3MDB A;  1MR1 A;  2XT9 B;  3VZC A;  5EJI A;  3AFO A;  2JQJ A;  4D9V A;  2AFF A;  1Y3H A;  2JPE A;  2JKD A;  3UNN A;  3VPY A;  2JQI A;  4QCJ A;  3UV0 A;  1KHU A;  4A0E A;  5E50 A;  3A77 A;  1K2M A;  1G88 A;  1MJS A;  2P1R A;  3T5P A;  5A8I A;  1U7F A;  1Z0S A;  4WRR A;  5JEM A;  4G2S A;  5DHQ A;  1U7V B;  3VZB A;  5EJG A;  4L02 A;  4R9P A;  5DJO A;  3DSH A;  4H87 A;  1K2N A;  3V8M A;  3V8R A;  3I0N A;  4JIW D;  1MZK A;  4EJQ A;  2BRF A;  3I6W A;  1DMZ A;  2QV7 A;  1Z0Z A;  5JEK A;  1J4L A;  1YJM A;  1LGP A;  2QVL A;  2LC1 A;  3GMJ A;  3S40 A;  3FM8 A;  1DD1 A;  2KB3 A;  2JQL A;  5DHP A;  2BON A;  4EGX A;  2G1L A;  2FEZ A;  3VA4 A;  2I2C A;  1YGS A;  3DIT A;  3I6U A;  1K3J A;  2CSW A;  1WV3 A;  4A4Y A;  4V24 A;  1UHT A;  2I2A A;  1MK2 A;  2A0T A;  4DY6 A;  5JEO A;  4JON A;  4WER A;  1J2F A;  1U7F B;  3UMZ A;  1Y3I A;  2I1W A;  1G6G A;  1YT5 A;  3HX1 A;  3ELS A;  5BVI A;  1SUW A;  5C4V A;  5JEJ A;  2I2D A;  2JGR A;  3VZD A;  1G3G A;  1LGQ A;  3I0M A;  1K3N A;  1YJ5 C;  2KFU A;  2W3O A;  1R21 A;  2I29 A;  5DHT A; 
#chains in the Genus database with same CATH homology
 1J4Q A;  1WLN A;  1U7V A;  3UOT A;  3ELV A;  3UNM A;  1QWT A;  2FF4 A;  2XXS A;  3UN0 A;  3VA1 A;  1KHX A;  3HUE A;  2PIE A;  1FHR A;  5JER A;  4JIV D;  3POA A;  1K3Q A;  1UJX A;  3KT9 A;  1DEV A;  5JEL A;  2KKL A;  3OUN A;  1FHQ A;  3GQS A;  1ZOQ A;  1J4O A;  4KU0 D;  1QU5 A;  3HUF A;  3PO8 A;  2KB4 A;  1J4P A;  1GXC A;  3MDB A;  1J4K A;  2EH0 A;  1MR1 A;  2XT9 B;  3VZC A;  2JQJ A;  4D9V A;  2AFF A;  2JPE A;  2JKD A;  3UNN A;  3VPY A;  2JQI A;  4QCJ A;  3UV0 A;  1KHU A;  4A0E A;  5E50 A;  3A77 A;  1K2M A;  1G88 A;  1MJS A;  2P1R A;  3T5P A;  5A8I A;  1U7F A;  4WRR A;  5JEM A;  4G2S A;  3VZB A;  1U7V B;  4L02 A;  4R9P A;  5DJO A;  3DSH A;  4H87 A;  1K2N A;  3I0N A;  4JIW D;  1MZK A;  4EJQ A;  2BRF A;  3I6W A;  1DMZ A;  2QV7 A;  5JEK A;  1J4L A;  1YJM A;  1LGP A;  2QVL A;  2LC1 A;  3GMJ A;  3S40 A;  3FM8 A;  1DD1 A;  2KB3 A;  2JQL A;  4EGX A;  2BON A;  2G1L A;  2FEZ A;  3VA4 A;  1YGS A;  3DIT A;  3I6U A;  1K3J A;  2CSW A;  1WV3 A;  4A4Y A;  4V24 A;  1UHT A;  1MK2 A;  2A0T A;  5JEO A;  4JON A;  4WER A;  1J2F A;  1U7F B;  3UMZ A;  1G6G A;  3HX1 A;  3ELS A;  5BVI A;  5C4V A;  5JEJ A;  2JGR A;  3VZD A;  1G3G A;  1LGQ A;  3I0M A;  1K3N A;  1YJ5 C;  2KFU A;  2W3O A;  1R21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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