The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
202
|
sequence length |
589
|
structure length |
589
|
Chain Sequence |
AKDPRYVGNLPKIGIRPTIDGRRKGVRESLEETTMNMAKAVAKLLEENVFYYNGQPVECVIADTCIGGVKEAAEAAEKFAREGVGVSITVTPCWCYGTETMDMDPHIPKAVWGFNGTERPGAVYLAAVLAGYNQKGLPAFGIYGKDVQDAGDTNIPEDVKEKLIRFAKAGLAVAMMKGKSYLSIGSVSMGIAGSVVQEDFFQNYLGMRNEYVDMSEFVRRIELGIYDKEEYERALKWVKENCKVGPDNNRDGFKRTEEQKEKDWEISVKMALIARDLMVGNKKLEEMGYGEEALGRNAIVAGFQGQRQWTDYFPNGDFMETILNSSFDWNGKRAPYIFATENDNLNGISMLFGYLLTNTAQIFADVRTYWSPEAVKRVTGYTLEGRAANGIIHLINSGAAALDGTGEQTKDGKPVIKPYYELTDEDIKKCLEATQFRPASTEYFRGGGYSTDFLTKGGMPVTISRLNIVKGLGPVLQIAEGYTVDLPEEVHDVLDKRTDPTWPTTWFVPNLTGEGAFKDVYSVMNNWGANHCSISYGHIGADLITLASILRIPVNMHNVPEEKIFRPDAWSMFGTKDLEGADYRACKKL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-ray structures of Bacillus pallidusd-arabinose isomerase and its complex with l-fucitol.
pubmed doi rcsb |
| molecule keywords |
D-arabinose isomerase
|
| source organism |
Geobacillus pallidus
|
| molecule tags |
Isomerase
|
| total genus |
202
|
| structure length |
589
|
| sequence length |
589
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
5.3.1.3: D-arabinose isomerase. |
| pdb deposition date | 2009-11-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02952 | Fucose_iso_C | L-fucose isomerase, C-terminal domain |
| A | PF07881 | Fucose_iso_N1 | L-fucose isomerase, first N-terminal domain |
| A | PF07882 | Fucose_iso_N2 | L-fucose isomerase, second N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | L-fucose Isomerase; Chain A, domain 3 | L-fucose/L-arabinose isomerase, C-terminal | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Rossmann fold | ||
| Alpha Beta | 3-Layer(aba) Sandwich | L-fucose Isomerase; Chain A, domain 2 | L-fucose Isomerase; Chain A, domain 2 |
