3AA7A

Crystal structure of actin capping protein
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
molecule tags Protein binding
source organism Gallus gallus
molecule keywords F-actin-capping protein subunit alpha-1
total genus 84
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa7A02
3AAAB 3AA7A 4AKRA 3LK42 3LK3A 5AFUL 3AAEB 1IZNA 5AFUK 2KZ7A 2KXPA 3AA1B 3LK41 3LK2A 3AA7B 4AKRB 3AA0A 3LK3B 3AA6A 3AAAA 1IZNB 2KXPB 2KZ7B 3AAEA 3LK2B 5ADXL 3AA1A 3AA0B 5ADXK 3AA6B
chains in the Genus database with same CATH superfamily
4IL6O 5D5DA 5DL8A 1IZNA 4UB6O 1GFNA 4RLCA 4RJXA 3SY9A 2X27X 7PRNA 3UU2A 1GU9A 1QJ8A 2F1VA 3SYSA 3PQUA 2YNKA 2WVPA 1OPFA 3AA1A 4AFKA 4LSIA 4AYMC 1H6S1 3BS0A 2CWQA 4FZNA 1ORMA 3VZWX 3AA0A 5DL7A 3C5OA 6PRNA 4RLBA 2R89A 4XNKA 2PRRA 4D64A 3BRYA 4FRXA 2XG6A 1T1LA 4E1SA 3SZVA 2N2MA 5E79O 1HXUA 4O3WA 5GTHO 3LK2B 2J1NA 3AAAB 5G26A 3BEYA 3LK42 1VKEA 1Q9GA 4FZLA 3PQSA 3WI5A 2Y0HA 4GF4A 2KC0A 2OUWA 5KAFO 3QRCA 4LSFA 2ERVA 4O4UA 2XE1A 5PRNA 5JDPA 1HXXA 5T5FA 4F4BA 5AFUL 2KXPA 2PORA 4D65A 4FSPA 4AKRB 2QTKA 2K4TA 1ZHXA 4C4VA 4O3XB 3A2SX 3SY7A 1MM5A 4FESA 4FQEA 4AYEC 4O3ZA 2XE5A 3SYBA 2GE4A 1GFQA 4GCSA 1OSMA 1MPFA 2MHLA 2R4PA 3T20A 2KZ7B 3AAEA 5G3AA 4E1TA 5IYUA 4LSEA 3AA6B 3AA7A 2KDYA 2O4VA 3LK3A 2W80C 3PF1A 3K19A 2AF7A 4PJ0O 3A0HO 4JCHA 3POXA 4CTDA 2IWVA 4KR4A 3TZGA 4FUVA 2KXPB 5KAIO 5B66O 5B5EO 3KZIO 4RJWA 4PUXA 3A0BO 2R88A 4O49A 1T16A 4K3BA 2WJRA 2FGQX 1Q9FA 5TISO 3O0EA 1IZNB 1ZHZA 3WI4A 3DWNA 1HXTA 1GFMA 3PRNA 2YPVA 3VZUX 4N75A 5DL6A 3HOEA 4FRTA 3VE2A 4AYDC 3DA3A 4AKMA 3AA1B 4GCPA 3HWBA 2M07A 4C69X 1KNCA 1QJ9A 2Y2XA 2OYOA 3HOLA 2F1TA 4KRAA 3AA0B 4N58A 5DIPA 4AZLA 3DWOX 4D5UA 4O4XA 4N74A 1ME5A 1E54A 4G76A 5DL5A 5FVNA 4BUMX 2JQYA 3SZDA 2ES9A 2Y0LA 3POUA 5G38A 2F1CX 3T24A 3PORA 3DZMA 3PGUA 1PHOA 4PR7A 1S5LO 3PGSA 1YS5A 5H2FO 3RBHA 4U9CA 1THQA 5G39A 4GCQA 5DIKA 4FOZA 4UB8O 3VY9X 4QQ1A 1P8CA 4G9QA 2ZFGA 2ODJA 2FGRA 1ZHWA 1BT9A 4O3YA 3LVYA 5AFUK 3NSGA 2R8AA 2MNHA 2ZLDA 3LK2A 3QRAA 3D7IA 1GFPA 3AAAA 4XNLA 4KR8A 3VZTX 2LFUA 4FSOA 3VY8X 3BRZA 2N2LA 4N59A 4AYNA 3DA4A 2Y7SA 2Y0KA 4C4VB 3JCUO 3VE1A 2QEUA 3UPGA 2IJCA 2R4NA 3FYXA 3GP6A 3LK41 2J4UP 4FT6A 5EE2A 2XMXA 2R4OA 1G90A 1LW1A 2LHFA 5ADXL 4AUIA 2Q0TA 3KVDD 2JMMA 4AKRA 4G75A 2XE3A 3HW9A 8PRNA 3AAEB 4AYID 3C1LA 4K3CA 3AA7B 3LK3B 1PRNA 3JTYA 3PGRA 2AXTO 2OMFA 2XTQA 4B61A 2O4DA 4C00A 4LSHA 5GTIO 4FMSA 2R4LA 2KZ7A 2K0LA 1P4TA 1ZHYA 4JFBA 3AA6A 1BH3A 3NJTA 2W81C 4GHBA 2XE2A 3EMNX 2PFXA 3UAQA 4FZMA 5ADXK 3WU2O 4Z3TA 4RL9A 5GV0A 2M06A 3V8UA 1ZHTA 3POQA 2XTRA 2WJQA 1QJPA 2JN8A 1GFOA 2X9KA 1MM4A 2GMYA 3G7GA 2IWWA 2PRNA 1BXWA 3T0SA
chains in the Genus database with same CATH topology
2YPVA 5D5DA 3VZUX 3VE1A 5T5FA 5DL6A 3HOEA 4FRTA 3VE2A 4F4BA 2QEUA 5AFUL 5DL8A 4AYDC 3UPGA 1IZNA 2IJCA 3DA3A 2KXPA 3FYXA 1GFNA 3GP6A 3AA1B 4AKMA 4GCPA 4RLCA 4RJXA 3SY9A 3LK41 2J4UP 2PORA 4D65A 2X27X 4FSPA 7PRNA 3HWBA 4AKRB 4FT6A 3UU2A 2QTKA 5EE2A 1GU9A 2M07A 2K4TA 2XMXA 4C69X 1ZHXA 1QJ8A 1KNCA 2F1VA 4O3XB 3A2SX 3SYSA 3SY7A 1QJ9A 2Y2XA 3PQUA 2YNKA 1G90A 3T0SA 1LW1A 2OYOA 3HOLA 1OPFA 2LHFA 1HXXA 1MM5A 3AA1A 2F1TA 4FESA 5ADXL 4AFKA 4AYEC 4KRAA 4O3ZA 3AA0B 4AUIA 2Q0TA 3KVDD 2XE5A 4N58A 5DIPA 2JMMA 4AKRA 4LSIA 3SYBA 4AYMC 2GE4A 1GFQA 2XE3A 3HW9A 4G75A 4AZLA 4GCSA 3AAEB 8PRNA 4AYID 1OSMA 4O4XA 4D5UA 3C1LA 1H6S1 1MPFA 2MHLA 2CWQA 1ME5A 4FZNA 1ORMA 3AA7B 3VZWX 3AA0A 3LK3B 1PRNA 1E54A 3C5OA 3JTYA 4G76A 5DL5A 5DL7A 5FVNA 4RLBA 4BUMX 6PRNA 3T20A 4XNKA 3SZDA 2KZ7B 2OMFA 2ES9A 2PRRA 3AAEA 2Y0LA 3POUA 2XTQA 4B61A 4D64A 3T24A 3PORA 2O4DA 4E1TA 4FRXA 2XG6A 4LSHA 5IYUA 4LSEA 3AA6B 1PHOA 3AA7A 2KDYA 2O4VA 4E1SA 3LK3A 2W80C 4FMSA 1YS5A 3K19A 3SZVA 2KZ7A 2N2MA 2AF7A 2Y7SA 3RBHA 2K0LA 4U9CA 1P4TA 1THQA 4JCHA 1ZHYA 3POXA 1HXUA 4O3WA 4GCQA 4KR4A 4JFBA 3AA6A 1BH3A 3TZGA 5DIKA 4FUVA 4FOZA 2KXPB 2W81C 4N59A 4GHBA 2XE2A 3VY9X 3EMNX 4QQ1A 3LK2B 4RJWA 2J1NA 2PFXA 1P8CA 3UAQA 4G9QA 4FZMA 5ADXK 2ZFGA 4PUXA 2ODJA 3AAAB 2FGRA 5G26A 4Z3TA 4RL9A 5GV0A 3BEYA 3LK42 1ZHWA 1BT9A 1VKEA 4O3YA 2M06A 4O49A 3LVYA 1Q9GA 4FZLA 5AFUK 3V8UA 1ZHTA 3PQSA 3WI5A 3POQA 2XTRA 3NSGA 2Y0HA 4AYNA 2MNHA 2ZLDA 3LK2A 1QJPA 2FGQX 4GF4A 3QRAA 1Q9FA 2KC0A 3D7IA 1GFPA 2OUWA 3O0EA 3AAAA 1IZNB 4XNLA 1ZHZA 2JN8A 3QRCA 1GFOA 2ERVA 4KR8A 2LFUA 4LSFA 4O4UA 3VZTX 3WI4A 1MM4A 2GMYA 1HXTA 2XE1A 3G7GA 4FSOA 3VY8X 2N2LA 5PRNA 1GFMA 2PRNA 3PRNA 5JDPA 1BXWA 3DA4A 2Y0KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA B;  3AA7 A;  4AKR A;  3LK4 2;  3LK3 A;  5AFU L;  3AAE B;  1IZN A;  5AFU K;  2KZ7 A;  2KXP A;  3AA1 B;  3LK4 1;  3LK2 A;  3AA7 B;  4AKR B;  3AA0 A;  3LK3 B;  3AA6 A;  3AAA A;  1IZN B;  2KXP B;  2KZ7 B;  3AAE A;  3LK2 B;  5ADX L;  3AA1 A;  3AA0 B;  5ADX K;  3AA6 B; 
#chains in the Genus database with same CATH topology
 4IL6 O;  5D5D A;  5DL8 A;  1IZN A;  4UB6 O;  1GFN A;  4RLC A;  4RJX A;  3SY9 A;  2X27 X;  7PRN A;  3UU2 A;  1GU9 A;  1QJ8 A;  2F1V A;  3SYS A;  3PQU A;  2YNK A;  2WVP A;  1OPF A;  3AA1 A;  4AFK A;  4LSI A;  4AYM C;  1H6S 1;  3BS0 A;  2CWQ A;  4FZN A;  1ORM A;  3VZW X;  3AA0 A;  5DL7 A;  3C5O A;  6PRN A;  4RLB A;  2R89 A;  4XNK A;  2PRR A;  4D64 A;  3BRY A;  4FRX A;  2XG6 A;  1T1L A;  4E1S A;  3SZV A;  2N2M A;  5E79 O;  1HXU A;  4O3W A;  5GTH O;  3LK2 B;  2J1N A;  3AAA B;  5G26 A;  3BEY A;  3LK4 2;  1VKE A;  1Q9G A;  4FZL A;  3PQS A;  3WI5 A;  2Y0H A;  4GF4 A;  2KC0 A;  2OUW A;  5KAF O;  3QRC A;  4LSF A;  2ERV A;  4O4U A;  2XE1 A;  5PRN A;  5JDP A;  1HXX A;  5T5F A;  4F4B A;  5AFU L;  2KXP A;  2POR A;  4D65 A;  4FSP A;  4AKR B;  2QTK A;  2K4T A;  1ZHX A;  4C4V A;  4O3X B;  3A2S X;  3SY7 A;  1MM5 A;  4FES A;  4FQE A;  4AYE C;  4O3Z A;  2XE5 A;  3SYB A;  2GE4 A;  1GFQ A;  4GCS A;  1OSM A;  1MPF A;  2MHL A;  2R4P A;  3T20 A;  2KZ7 B;  3AAE A;  5G3A A;  4E1T A;  5IYU A;  4LSE A;  3AA6 B;  3AA7 A;  2KDY A;  2O4V A;  3LK3 A;  2W80 C;  3PF1 A;  3K19 A;  2AF7 A;  4PJ0 O;  3A0H O;  4JCH A;  3POX A;  4CTD A;  2IWV A;  4KR4 A;  3TZG A;  4FUV A;  2KXP B;  5KAI O;  5B66 O;  5B5E O;  3KZI O;  4RJW A;  4PUX A;  3A0B O;  2R88 A;  4O49 A;  1T16 A;  4K3B A;  2WJR A;  2FGQ X;  1Q9F A;  5TIS O;  3O0E A;  1IZN B;  1ZHZ A;  3WI4 A;  3DWN A;  1HXT A;  1GFM A;  3PRN A;  2YPV A;  3VZU X;  4N75 A;  5DL6 A;  3HOE A;  4FRT A;  3VE2 A;  4AYD C;  3DA3 A;  4AKM A;  3AA1 B;  4GCP A;  3HWB A;  2M07 A;  4C69 X;  1KNC A;  1QJ9 A;  2Y2X A;  2OYO A;  3HOL A;  2F1T A;  4KRA A;  3AA0 B;  4N58 A;  5DIP A;  4AZL A;  3DWO X;  4D5U A;  4O4X A;  4N74 A;  1ME5 A;  1E54 A;  4G76 A;  5DL5 A;  5FVN A;  4BUM X;  2JQY A;  3SZD A;  2ES9 A;  2Y0L A;  3POU A;  5G38 A;  2F1C X;  3T24 A;  3POR A;  3DZM A;  3PGU A;  1PHO A;  4PR7 A;  1S5L O;  3PGS A;  1YS5 A;  5H2F O;  3RBH A;  4U9C A;  1THQ A;  5G39 A;  4GCQ A;  5DIK A;  4FOZ A;  4UB8 O;  3VY9 X;  4QQ1 A;  1P8C A;  4G9Q A;  2ZFG A;  2ODJ A;  2FGR A;  1ZHW A;  1BT9 A;  4O3Y A;  3LVY A;  5AFU K;  3NSG A;  2R8A A;  2MNH A;  2ZLD A;  3LK2 A;  3QRA A;  3D7I A;  1GFP A;  3AAA A;  4XNL A;  4KR8 A;  3VZT X;  2LFU A;  4FSO A;  3VY8 X;  3BRZ A;  2N2L A;  4N59 A;  4AYN A;  3DA4 A;  2Y7S A;  2Y0K A;  4C4V B;  3JCU O;  3VE1 A;  2QEU A;  3UPG A;  2IJC A;  2R4N A;  3FYX A;  3GP6 A;  3LK4 1;  2J4U P;  4FT6 A;  5EE2 A;  2XMX A;  2R4O A;  1G90 A;  1LW1 A;  2LHF A;  5ADX L;  4AUI A;  2Q0T A;  3KVD D;  2JMM A;  4AKR A;  4G75 A;  2XE3 A;  3HW9 A;  8PRN A;  3AAE B;  4AYI D;  3C1L A;  4K3C A;  3AA7 B;  3LK3 B;  1PRN A;  3JTY A;  3PGR A;  2AXT O;  2OMF A;  2XTQ A;  4B61 A;  2O4D A;  4C00 A;  4LSH A;  5GTI O;  4FMS A;  2R4L A;  2KZ7 A;  2K0L A;  1P4T A;  1ZHY A;  4JFB A;  3AA6 A;  1BH3 A;  3NJT A;  2W81 C;  4GHB A;  2XE2 A;  3EMN X;  2PFX A;  3UAQ A;  4FZM A;  5ADX K;  3WU2 O;  4Z3T A;  4RL9 A;  5GV0 A;  2M06 A;  3V8U A;  1ZHT A;  3POQ A;  2XTR A;  2WJQ A;  1QJP A;  2JN8 A;  1GFO A;  2X9K A;  1MM4 A;  2GMY A;  3G7G A;  2IWW A;  2PRN A;  1BXW A;  3T0S A; 
#chains in the Genus database with same CATH homology
 2YPV A;  5D5D A;  3VZU X;  3VE1 A;  5T5F A;  5DL6 A;  3HOE A;  4FRT A;  3VE2 A;  4F4B A;  2QEU A;  5AFU L;  5DL8 A;  4AYD C;  3UPG A;  1IZN A;  2IJC A;  3DA3 A;  2KXP A;  3FYX A;  1GFN A;  3GP6 A;  3AA1 B;  4AKM A;  4GCP A;  4RLC A;  4RJX A;  3SY9 A;  3LK4 1;  2J4U P;  2POR A;  4D65 A;  2X27 X;  4FSP A;  7PRN A;  3HWB A;  4AKR B;  4FT6 A;  3UU2 A;  2QTK A;  5EE2 A;  1GU9 A;  2M07 A;  2K4T A;  2XMX A;  4C69 X;  1ZHX A;  1QJ8 A;  1KNC A;  2F1V A;  4O3X B;  3A2S X;  3SYS A;  3SY7 A;  1QJ9 A;  2Y2X A;  3PQU A;  2YNK A;  1G90 A;  3T0S A;  1LW1 A;  2OYO A;  3HOL A;  1OPF A;  2LHF A;  1HXX A;  1MM5 A;  3AA1 A;  2F1T A;  4FES A;  5ADX L;  4AFK A;  4AYE C;  4KRA A;  4O3Z A;  3AA0 B;  4AUI A;  2Q0T A;  3KVD D;  2XE5 A;  4N58 A;  5DIP A;  2JMM A;  4AKR A;  4LSI A;  3SYB A;  4AYM C;  2GE4 A;  1GFQ A;  2XE3 A;  3HW9 A;  4G75 A;  4AZL A;  4GCS A;  3AAE B;  8PRN A;  4AYI D;  1OSM A;  4O4X A;  4D5U A;  3C1L A;  1H6S 1;  1MPF A;  2MHL A;  2CWQ A;  1ME5 A;  4FZN A;  1ORM A;  3AA7 B;  3VZW X;  3AA0 A;  3LK3 B;  1PRN A;  1E54 A;  3C5O A;  3JTY A;  4G76 A;  5DL5 A;  5DL7 A;  5FVN A;  4RLB A;  4BUM X;  6PRN A;  3T20 A;  4XNK A;  3SZD A;  2KZ7 B;  2OMF A;  2ES9 A;  2PRR A;  3AAE A;  2Y0L A;  3POU A;  2XTQ A;  4B61 A;  4D64 A;  3T24 A;  3POR A;  2O4D A;  4E1T A;  4FRX A;  2XG6 A;  4LSH A;  5IYU A;  4LSE A;  3AA6 B;  1PHO A;  3AA7 A;  2KDY A;  2O4V A;  4E1S A;  3LK3 A;  2W80 C;  4FMS A;  1YS5 A;  3K19 A;  3SZV A;  2KZ7 A;  2N2M A;  2AF7 A;  2Y7S A;  3RBH A;  2K0L A;  4U9C A;  1P4T A;  1THQ A;  4JCH A;  1ZHY A;  3POX A;  1HXU A;  4O3W A;  4GCQ A;  4KR4 A;  4JFB A;  3AA6 A;  1BH3 A;  3TZG A;  5DIK A;  4FUV A;  4FOZ A;  2KXP B;  2W81 C;  4N59 A;  4GHB A;  2XE2 A;  3VY9 X;  3EMN X;  4QQ1 A;  3LK2 B;  4RJW A;  2J1N A;  2PFX A;  1P8C A;  3UAQ A;  4G9Q A;  4FZM A;  5ADX K;  2ZFG A;  4PUX A;  2ODJ A;  3AAA B;  2FGR A;  5G26 A;  4Z3T A;  4RL9 A;  5GV0 A;  3BEY A;  3LK4 2;  1ZHW A;  1BT9 A;  1VKE A;  4O3Y A;  2M06 A;  4O49 A;  3LVY A;  1Q9G A;  4FZL A;  5AFU K;  3V8U A;  1ZHT A;  3PQS A;  3WI5 A;  3POQ A;  2XTR A;  3NSG A;  2Y0H A;  4AYN A;  2MNH A;  2ZLD A;  3LK2 A;  1QJP A;  2FGQ X;  4GF4 A;  3QRA A;  1Q9F A;  2KC0 A;  3D7I A;  1GFP A;  2OUW A;  3O0E A;  3AAA A;  1IZN B;  4XNL A;  1ZHZ A;  2JN8 A;  3QRC A;  1GFO A;  2ERV A;  4KR8 A;  2LFU A;  4LSF A;  4O4U A;  3VZT X;  3WI4 A;  1MM4 A;  2GMY A;  1HXT A;  2XE1 A;  3G7G A;  4FSO A;  3VY8 X;  2N2L A;  5PRN A;  1GFM A;  2PRN A;  3PRN A;  5JDP A;  1BXW A;  3DA4 A;  2Y0K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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