3AA7A

Crystal structure of actin capping protein
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
269
structure length
269
Chain Sequence
b'VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 84
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa7A02
3AA6B 3LK3B 3LK2A 3AA0A 2KXPB 4AKRB 3AAEA 5ADXK 2KZ7B 3LK2B 3AA1A 5AFUL 3AA0B 3AAEB 1IZNA 3LK42 3AA1B 5ADXL 1IZNB 3AA7A 3AAAA 4AKRA 5AFUK 3AA7B 3AA6A 3LK3A 3LK41 3AAAB 2KXPA 2KZ7A
chains in the Genus database with same CATH superfamily
3HOEA 3KZIO 3POQA 4GHBA 4GCSA 4N74A 2CWQA 2F1VA 2QEUA 4FZNA 4N58A 2M06A 4PJ0O 3BRZA 3AA7A 1VKEA 4U9CA 2YNKA 3KVDD 1P8CA 4QQ1A 1KNCA 3LK41 3PRNA 2K0LA 4D5UA 2KXPB 3BEYA 5AFUL 3C1LA 3G7GA 4AYNA 5DL8A 5DL7A 5DL6A 3VE2A 4RLBA 3JCUO 1P4TA 4LSEA 3T20A 1HXXA 4K3CA 3LVYA 1HXTA 4FZMA 4LSHA 5KAFO 1PRNA 1ZHXA 1GFMA 2J4UP 3LK3A 4FESA 2F1CX 5ADXK 3DWNA 2GMYA 3PQUA 2X27X 2O4VA 2LFUA 2JMMA 3K19A 3HWBA 3HOLA 4AYID 3TZGA 4BUMX 4AKRA 3PGUA 1GFOA 4AYMC 1T16A 4G76A 8PRNA 5JDPA 3WU2O 4O3YA 4E1TA 2OMFA 4UB8O 5GTHO 5PRNA 3AA1A 2N2MA 4N59A 1MM4A 1T1LA 3UAQA 1QJ8A 5E79O 4O3WA 3BS0A 3VY8X 3AA1B 4GF4A 2AF7A 5KAIO 4AZLA 4G75A 2PRRA 2OYOA 2IWVA 1GFNA 4D64A 2LHFA 2JQYA 6PRNA 5GV0A 1HXUA 3RBHA 4FSPA 4AYEC 5EE2A 1OSMA 3VY9X 2XMXA 1MM5A 3AAAB 2KXPA 2Y2XA 2Y0KA 1BH3A 2M07A 3A2SX 3AA0B 2R88A 4F4BA 2K4TA 2MNHA 1GFQA 2ERVA 4FZLA 4O3XB 4O3ZA 3UPGA 2IJCA 2N2LA 2ODJA 4XNLA 4E1SA 3AA6B 3NSGA 2XG6A 4LSIA 4O49A 3QRAA 4LSFA 4N75A 3PORA 2J1NA 2JN8A 1E54A 3VZTX 2R4PA 4AKMA 3VZUX 2FGQX 4GCPA 1QJ9A 3PF1A 3UU2A 5DIPA 3VE1A 3LK2B 4FT6A 1PHOA 2GE4A 2AXTO 3EMNX 2W80C 5DIKA 3PGRA 2Q0TA 1THQA 2WJQA 2Y7SA 3NJTA 3T0SA 3SZDA 2O4DA 1IZNA 2Y0LA 4XNKA 1LW1A 3V8UA 1IZNB 3C5OA 3JTYA 2ZFGA 2IWWA 4KR4A 5AFUK 4PR7A 4AUIA 3WI4A 4KR8A 4GCQA 5G38A 3T24A 2XTQA 2KZ7B 1MPFA 4O4XA 5TISO 5G3AA 1H6S1 4AFKA 3AAEB 3SY9A 1S5LO 5B5EO 5ADXL 1BXWA 2F1TA 3AAAA 4CTDA 2XE1A 1ME5A 2KC0A 3POUA 2R4NA 2XE2A 3GP6A 3VZWX 5GTIO 3SYBA 1ZHTA 3AA0A 2KDYA 2R89A 4RLCA 2ES9A 2WVPA 3LK42 3WI5A 3POXA 3SZVA 3AA7B 5T5FA 3AA6A 1ZHYA 4D65A 4FRXA 4RJXA 3DZMA 4FMSA 4K3BA 3QRCA 2R4OA 3PGSA 4FSOA 4Z3TA 5G26A 2XE5A 5G39A 2R8AA 3A0HO 4C69X 2FGRA 2PORA 4C00A 3DA4A 3FYXA 5IYUA 5FVNA 3PQSA 1QJPA 5DL5A 2W81C 2R4LA 4AYDC 3LK2A 3D7IA 1Q9GA 2Y0HA 1YS5A 1ORMA 5D5DA 3SY7A 4B61A 4O4UA 4FUVA 4G9QA 2XE3A 4FRTA 3BRYA 1Q9FA 3LK3B 5B66O 3A0BO 1BT9A 1GU9A 1GFPA 1G90A 3HW9A 7PRNA 2X9KA 2WJRA 3DA3A 4RJWA 4KRAA 4AKRB 2KZ7A 4IL6O 1OPFA 2ZLDA 4RL9A 4FOZA 3AAEA 2QTKA 4C4VA 2PFXA 2MHLA 4JCHA 4C4VB 4FQEA 2YPVA 3SYSA 4PUXA 1ZHZA 1ZHWA 3DWOX 2PRNA 5H2FO 2XTRA 3O0EA 4UB6O 2OUWA 4JFBA
chains in the Genus database with same CATH topology
3HOEA 4O3YA 4E1TA 4FSOA 3UU2A 4Z3TA 2OMFA 5G26A 3POQA 5DIPA 3VE1A 5PRNA 2XE5A 3AA1A 2N2MA 3LK2B 4GHBA 4N59A 4FT6A 1MM4A 3UAQA 4GCSA 1QJ8A 4O3WA 4C69X 1PHOA 3VY8X 2CWQA 2F1VA 2QEUA 3AA1B 4FZNA 4N58A 2GE4A 4GF4A 2M06A 2AF7A 3AA7A 2FGRA 2PORA 3EMNX 1VKEA 4U9CA 2YNKA 4AZLA 4G75A 3DA4A 3KVDD 1P8CA 3FYXA 2W80C 5IYUA 5DIKA 4QQ1A 5FVNA 3PQSA 1QJPA 1KNCA 5DL5A 3LK41 2PRRA 2OYOA 2W81C 2Q0TA 1THQA 3PRNA 4AYDC 2K0LA 1GFNA 2Y7SA 4FMSA 3LK2A 3D7IA 4D5UA 4D64A 2KXPB 3T0SA 1Q9GA 2Y0HA 3BEYA 2LHFA 3SZDA 1YS5A 2O4DA 1ORMA 5AFUL 6PRNA 3C1LA 5GV0A 1IZNA 1HXUA 2Y0LA 4XNKA 3G7GA 8PRNA 1LW1A 5D5DA 3V8UA 3RBHA 4FSPA 3SY7A 1IZNB 4AYEC 4B61A 4AYNA 4O4UA 4FUVA 3C5OA 1OSMA 3JTYA 5DL8A 5DL7A 5EE2A 5DL6A 3VE2A 3VY9X 2ZFGA 4G9QA 4RLBA 2XE3A 4KR4A 5AFUK 4AUIA 2XMXA 4FRTA 1MM5A 3AAAB 2KXPA 1P4TA 3WI4A 1Q9FA 2Y2XA 3LK3B 4GCQA 4KR8A 4LSEA 3T24A 2XTQA 3T20A 2KZ7B 1MPFA 1BH3A 2Y0KA 4JFBA 2M07A 4O4XA 1HXXA 3A2SX 1BT9A 4AFKA 1H6S1 3AA0B 3LVYA 1HXTA 3AAEB 4FZMA 1GU9A 4F4BA 4LSHA 2K4TA 1GFPA 3SY9A 2MNHA 1G90A 1GFQA 3HW9A 7PRNA 5ADXL 1PRNA 1ZHXA 2ERVA 4FZLA 1GFMA 4O3XB 4O3ZA 1BXWA 2F1TA 3AAAA 3UPGA 2IJCA 2XE1A 1ME5A 2KC0A 2N2LA 3LK3A 3DA3A 2ODJA 3POUA 4RJWA 2J4UP 2XE2A 4KRAA 3GP6A 4FESA 3VZWX 4AKRB 2KZ7A 3SYBA 1OPFA 1ZHTA 4XNLA 2ZLDA 3AA6B 4E1SA 4RL9A 3NSGA 3AA0A 2KDYA 2XG6A 4FOZA 3AAEA 5ADXK 2QTKA 4RLCA 4LSIA 2GMYA 3PQUA 4O49A 2PFXA 2ES9A 2MHLA 3QRAA 2X27X 2O4VA 4LSFA 3PORA 4JCHA 2LFUA 2JMMA 2J1NA 2JN8A 3LK42 3WI5A 3K19A 2YPVA 1E54A 3VZTX 3SYSA 4PUXA 1ZHZA 1ZHWA 3HWBA 3HOLA 4AKMA 2PRNA 4AYID 3VZUX 3TZGA 4BUMX 2FGQX 2XTRA 4GCPA 4AKRA 3O0EA 3POXA 3SZVA 1GFOA 3AA7B 1QJ9A 5T5FA 3AA6A 1ZHYA 4AYMC 4D65A 4FRXA 4RJXA 2OUWA 4G76A 3QRCA 5JDPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AA6 B;  3LK3 B;  3LK2 A;  3AA0 A;  2KXP B;  4AKR B;  3AAE A;  5ADX K;  2KZ7 B;  3LK2 B;  3AA1 A;  5AFU L;  3AA0 B;  3AAE B;  1IZN A;  3LK4 2;  3AA1 B;  5ADX L;  1IZN B;  3AA7 A;  3AAA A;  4AKR A;  5AFU K;  3AA7 B;  3AA6 A;  3LK3 A;  3LK4 1;  3AAA B;  2KXP A;  2KZ7 A; 
#chains in the Genus database with same CATH topology
 3HOE A;  3KZI O;  3POQ A;  4GHB A;  4GCS A;  4N74 A;  2CWQ A;  2F1V A;  2QEU A;  4FZN A;  4N58 A;  2M06 A;  4PJ0 O;  3BRZ A;  3AA7 A;  1VKE A;  4U9C A;  2YNK A;  3KVD D;  1P8C A;  4QQ1 A;  1KNC A;  3LK4 1;  3PRN A;  2K0L A;  4D5U A;  2KXP B;  3BEY A;  5AFU L;  3C1L A;  3G7G A;  4AYN A;  5DL8 A;  5DL7 A;  5DL6 A;  3VE2 A;  4RLB A;  3JCU O;  1P4T A;  4LSE A;  3T20 A;  1HXX A;  4K3C A;  3LVY A;  1HXT A;  4FZM A;  4LSH A;  5KAF O;  1PRN A;  1ZHX A;  1GFM A;  2J4U P;  3LK3 A;  4FES A;  2F1C X;  5ADX K;  3DWN A;  2GMY A;  3PQU A;  2X27 X;  2O4V A;  2LFU A;  2JMM A;  3K19 A;  3HWB A;  3HOL A;  4AYI D;  3TZG A;  4BUM X;  4AKR A;  3PGU A;  1GFO A;  4AYM C;  1T16 A;  4G76 A;  8PRN A;  5JDP A;  3WU2 O;  4O3Y A;  4E1T A;  2OMF A;  4UB8 O;  5GTH O;  5PRN A;  3AA1 A;  2N2M A;  4N59 A;  1MM4 A;  1T1L A;  3UAQ A;  1QJ8 A;  5E79 O;  4O3W A;  3BS0 A;  3VY8 X;  3AA1 B;  4GF4 A;  2AF7 A;  5KAI O;  4AZL A;  4G75 A;  2PRR A;  2OYO A;  2IWV A;  1GFN A;  4D64 A;  2LHF A;  2JQY A;  6PRN A;  5GV0 A;  1HXU A;  3RBH A;  4FSP A;  4AYE C;  5EE2 A;  1OSM A;  3VY9 X;  2XMX A;  1MM5 A;  3AAA B;  2KXP A;  2Y2X A;  2Y0K A;  1BH3 A;  2M07 A;  3A2S X;  3AA0 B;  2R88 A;  4F4B A;  2K4T A;  2MNH A;  1GFQ A;  2ERV A;  4FZL A;  4O3X B;  4O3Z A;  3UPG A;  2IJC A;  2N2L A;  2ODJ A;  4XNL A;  4E1S A;  3AA6 B;  3NSG A;  2XG6 A;  4LSI A;  4O49 A;  3QRA A;  4LSF A;  4N75 A;  3POR A;  2J1N A;  2JN8 A;  1E54 A;  3VZT X;  2R4P A;  4AKM A;  3VZU X;  2FGQ X;  4GCP A;  1QJ9 A;  3PF1 A;  3UU2 A;  5DIP A;  3VE1 A;  3LK2 B;  4FT6 A;  1PHO A;  2GE4 A;  2AXT O;  3EMN X;  2W80 C;  5DIK A;  3PGR A;  2Q0T A;  1THQ A;  2WJQ A;  2Y7S A;  3NJT A;  3T0S A;  3SZD A;  2O4D A;  1IZN A;  2Y0L A;  4XNK A;  1LW1 A;  3V8U A;  1IZN B;  3C5O A;  3JTY A;  2ZFG A;  2IWW A;  4KR4 A;  5AFU K;  4PR7 A;  4AUI A;  3WI4 A;  4KR8 A;  4GCQ A;  5G38 A;  3T24 A;  2XTQ A;  2KZ7 B;  1MPF A;  4O4X A;  5TIS O;  5G3A A;  1H6S 1;  4AFK A;  3AAE B;  3SY9 A;  1S5L O;  5B5E O;  5ADX L;  1BXW A;  2F1T A;  3AAA A;  4CTD A;  2XE1 A;  1ME5 A;  2KC0 A;  3POU A;  2R4N A;  2XE2 A;  3GP6 A;  3VZW X;  5GTI O;  3SYB A;  1ZHT A;  3AA0 A;  2KDY A;  2R89 A;  4RLC A;  2ES9 A;  2WVP A;  3LK4 2;  3WI5 A;  3POX A;  3SZV A;  3AA7 B;  5T5F A;  3AA6 A;  1ZHY A;  4D65 A;  4FRX A;  4RJX A;  3DZM A;  4FMS A;  4K3B A;  3QRC A;  2R4O A;  3PGS A;  4FSO A;  4Z3T A;  5G26 A;  2XE5 A;  5G39 A;  2R8A A;  3A0H O;  4C69 X;  2FGR A;  2POR A;  4C00 A;  3DA4 A;  3FYX A;  5IYU A;  5FVN A;  3PQS A;  1QJP A;  5DL5 A;  2W81 C;  2R4L A;  4AYD C;  3LK2 A;  3D7I A;  1Q9G A;  2Y0H A;  1YS5 A;  1ORM A;  5D5D A;  3SY7 A;  4B61 A;  4O4U A;  4FUV A;  4G9Q A;  2XE3 A;  4FRT A;  3BRY A;  1Q9F A;  3LK3 B;  5B66 O;  3A0B O;  1BT9 A;  1GU9 A;  1GFP A;  1G90 A;  3HW9 A;  7PRN A;  2X9K A;  2WJR A;  3DA3 A;  4RJW A;  4KRA A;  4AKR B;  2KZ7 A;  4IL6 O;  1OPF A;  2ZLD A;  4RL9 A;  4FOZ A;  3AAE A;  2QTK A;  4C4V A;  2PFX A;  2MHL A;  4JCH A;  4C4V B;  4FQE A;  2YPV A;  3SYS A;  4PUX A;  1ZHZ A;  1ZHW A;  3DWO X;  2PRN A;  5H2F O;  2XTR A;  3O0E A;  4UB6 O;  2OUW A;  4JFB A; 
#chains in the Genus database with same CATH homology
 3HOE A;  4O3Y A;  4E1T A;  4FSO A;  3UU2 A;  4Z3T A;  2OMF A;  5G26 A;  3POQ A;  5DIP A;  3VE1 A;  5PRN A;  2XE5 A;  3AA1 A;  2N2M A;  3LK2 B;  4GHB A;  4N59 A;  4FT6 A;  1MM4 A;  3UAQ A;  4GCS A;  1QJ8 A;  4O3W A;  4C69 X;  1PHO A;  3VY8 X;  2CWQ A;  2F1V A;  2QEU A;  3AA1 B;  4FZN A;  4N58 A;  2GE4 A;  4GF4 A;  2M06 A;  2AF7 A;  3AA7 A;  2FGR A;  2POR A;  3EMN X;  1VKE A;  4U9C A;  2YNK A;  4AZL A;  4G75 A;  3DA4 A;  3KVD D;  1P8C A;  3FYX A;  2W80 C;  5IYU A;  5DIK A;  4QQ1 A;  5FVN A;  3PQS A;  1QJP A;  1KNC A;  5DL5 A;  3LK4 1;  2PRR A;  2OYO A;  2W81 C;  2Q0T A;  1THQ A;  3PRN A;  4AYD C;  2K0L A;  1GFN A;  2Y7S A;  4FMS A;  3LK2 A;  3D7I A;  4D5U A;  4D64 A;  2KXP B;  3T0S A;  1Q9G A;  2Y0H A;  3BEY A;  2LHF A;  3SZD A;  1YS5 A;  2O4D A;  1ORM A;  5AFU L;  6PRN A;  3C1L A;  5GV0 A;  1IZN A;  1HXU A;  2Y0L A;  4XNK A;  3G7G A;  8PRN A;  1LW1 A;  5D5D A;  3V8U A;  3RBH A;  4FSP A;  3SY7 A;  1IZN B;  4AYE C;  4B61 A;  4AYN A;  4O4U A;  4FUV A;  3C5O A;  1OSM A;  3JTY A;  5DL8 A;  5DL7 A;  5EE2 A;  5DL6 A;  3VE2 A;  3VY9 X;  2ZFG A;  4G9Q A;  4RLB A;  2XE3 A;  4KR4 A;  5AFU K;  4AUI A;  2XMX A;  4FRT A;  1MM5 A;  3AAA B;  2KXP A;  1P4T A;  3WI4 A;  1Q9F A;  2Y2X A;  3LK3 B;  4GCQ A;  4KR8 A;  4LSE A;  3T24 A;  2XTQ A;  3T20 A;  2KZ7 B;  1MPF A;  1BH3 A;  2Y0K A;  4JFB A;  2M07 A;  4O4X A;  1HXX A;  3A2S X;  1BT9 A;  4AFK A;  1H6S 1;  3AA0 B;  3LVY A;  1HXT A;  3AAE B;  4FZM A;  1GU9 A;  4F4B A;  4LSH A;  2K4T A;  1GFP A;  3SY9 A;  2MNH A;  1G90 A;  1GFQ A;  3HW9 A;  7PRN A;  5ADX L;  1PRN A;  1ZHX A;  2ERV A;  4FZL A;  1GFM A;  4O3X B;  4O3Z A;  1BXW A;  2F1T A;  3AAA A;  3UPG A;  2IJC A;  2XE1 A;  1ME5 A;  2KC0 A;  2N2L A;  3LK3 A;  3DA3 A;  2ODJ A;  3POU A;  4RJW A;  2J4U P;  2XE2 A;  4KRA A;  3GP6 A;  4FES A;  3VZW X;  4AKR B;  2KZ7 A;  3SYB A;  1OPF A;  1ZHT A;  4XNL A;  2ZLD A;  3AA6 B;  4E1S A;  4RL9 A;  3NSG A;  3AA0 A;  2KDY A;  2XG6 A;  4FOZ A;  3AAE A;  5ADX K;  2QTK A;  4RLC A;  4LSI A;  2GMY A;  3PQU A;  4O49 A;  2PFX A;  2ES9 A;  2MHL A;  3QRA A;  2X27 X;  2O4V A;  4LSF A;  3POR A;  4JCH A;  2LFU A;  2JMM A;  2J1N A;  2JN8 A;  3LK4 2;  3WI5 A;  3K19 A;  2YPV A;  1E54 A;  3VZT X;  3SYS A;  4PUX A;  1ZHZ A;  1ZHW A;  3HWB A;  3HOL A;  4AKM A;  2PRN A;  4AYI D;  3VZU X;  3TZG A;  4BUM X;  2FGQ X;  2XTR A;  4GCP A;  4AKR A;  3O0E A;  3POX A;  3SZV A;  1GFO A;  3AA7 B;  1QJ9 A;  5T5F A;  3AA6 A;  1ZHY A;  4AYM C;  4D65 A;  4FRX A;  4RJX A;  2OUW A;  4G76 A;  3QRC A;  5JDP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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