3AA7A

Crystal structure of actin capping protein
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 84
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa7A02
4AKRA 3AA1A 3AAAB 3LK3A 3AA6A 3AAAA 2KXPB 3AA1B 3AA7B 3LK42 2KZ7B 4AKRB 3AAEB 3AAEA 5ADXK 3LK41 2KZ7A 5AFUK 1IZNB 3AA0B 3AA7A 5AFUL 5ADXL 2KXPA 3AA6B 3LK3B 1IZNA 3AA0A 3LK2B 3LK2A
chains in the Genus database with same CATH superfamily
3C1LA 4FZNA 4C4VA 1G90A 4FUVA 3QRCA 1OPFA 1ORMA 2K0LA 3A0HO 3SZVA 4F4BA 1H6S1 2YNKA 5DL7A 4LSHA 4G75A 4UB6O 3UPGA 2W80C 4N58A 2GMYA 4GCSA 4KR4A 2Y0HA 2JN8A 1E54A 3RBHA 8PRNA 5ADXK 4AYDC 3UU2A 1IZNB 2PFXA 2F1CX 1P8CA 2XE1A 3AA0B 3FYXA 3O0EA 2KXPA 2IWVA 4AFKA 3LK3B 4GHBA 4AYID 2O4VA 3PGUA 2IJCA 1THQA 1IZNA 3AA0A 1GFMA 1KNCA 2JMMA 1P4TA 2W81C 4FZMA 2LFUA 2ZFGA 1T16A 1BT9A 4K3CA 1ZHZA 2X27X 1MM4A 4O3ZA 4O3WA 3T24A 1ZHTA 1VKEA 1QJ9A 4XNKA 3VZUX 4AKRA 5GV0A 3POUA 4GCQA 5DIKA 3POQA 2X9KA 3SY7A 5H2FO 2K4TA 4QQ1A 4C69X 1PHOA 4FZLA 5IYUA 4XNLA 4E1SA 3PORA 3A0BO 3LK42 4O3XB 3VY8X 2R89A 4AKRB 5PRNA 5DIPA 2PORA 1GFPA 2GE4A 3AAEB 3JCUO 1Q9FA 4PUXA 4O4UA 1LW1A 3LK41 2XMXA 3DA3A 2KZ7A 3POXA 4FESA 4FMSA 5T5FA 3AA7A 4N75A 2OYOA 2MNHA 2R4PA 3DZMA 4RJWA 2Q0TA 1Q9GA 4PJ0O 3SYSA 5ADXL 1ME5A 3DWNA 4KR8A 5G39A 2ERVA 4FOZA 4U9CA 3NSGA 3HWBA 4JCHA 4O4XA 2Y0LA 4D5UA 4RLBA 1PRNA 5KAFO 4O49A 5KAIO 2XE2A 4FQEA 4LSIA 3NJTA 3JTYA 4RL9A 5DL5A 5E79O 3V8UA 2KC0A 2CWQA 1ZHXA 2Y2XA 5GTHO 4AYEC 4LSFA 3PF1A 4AYMC 3LK3A 2R8AA 3DWOX 3AAAA 2R4LA 3AA1B 3KZIO 4FT6A 2N2MA 3D7IA 4C4VB 3AA7B 2KDYA 1OSMA 2OMFA 4FRTA 2KZ7B 2AXTO 5FVNA 1GFNA 2OUWA 3UAQA 3VE1A 4FSOA 3BRZA 4GF4A 4Z3TA 2ES9A 2WVPA 3PQUA 3VE2A 5D5DA 4D65A 4D64A 3AAEA 2JQYA 2ZLDA 2PRRA 2AF7A 2YPVA 4E1TA 5G3AA 3SYBA 1QJ8A 3DA4A 1HXTA 2PRNA 3PRNA 1BH3A 2R4OA 3T0SA 4AKMA 3HOLA 5GTIO 2Y7SA 5B66O 2XE3A 3G7GA 1GFQA 3SY9A 2FGQX 3K19A 5EE2A 4AYNA 4GCPA 4N59A 2XE5A 3HOEA 4AZLA 4JFBA 3BRYA 4K3BA 2FGRA 6PRNA 4B61A 5DL8A 1YS5A 2MHLA 3KVDD 2M07A 3LK2B 4G76A 1MPFA 2F1VA 4FSPA 5TISO 3TZGA 2R88A 4RLCA 1HXUA 4AUIA 1ZHWA 1MM5A 2M06A 2N2LA 3QRAA 4RJXA 3AA1A 1QJPA 3AAAB 2QTKA 3AA6A 1BXWA 3PGRA 3VZTX 2KXPB 2J1NA 2R4NA 5JDPA 5B5EO 4CTDA 3SZDA 2ODJA 4N74A 4IL6O 2LHFA 2WJQA 3C5OA 4PR7A 3WU2O 4UB8O 2IWWA 5G38A 4O3YA 2QEUA 1T1LA 4KRAA 4BUMX 2F1TA 5AFUK 3BS0A 3LVYA 3WI5A 7PRNA 5G26A 5AFUL 3T20A 2Y0KA 1GU9A 1HXXA 3AA6B 3WI4A 2J4UP 3PQSA 3VY9X 3PGSA 2O4DA 3BEYA 3EMNX 2XTRA 5DL6A 2XTQA 2WJRA 4C00A 3HW9A 3VZWX 2XG6A 4FRXA 1S5LO 1GFOA 3GP6A 4LSEA 1ZHYA 4G9QA 3A2SX 3LK2A
chains in the Genus database with same CATH topology
3C1LA 4FZNA 1G90A 4FUVA 3QRCA 1OPFA 1ORMA 2K0LA 3SZVA 4F4BA 1H6S1 2YNKA 5DL7A 4LSHA 4G75A 3UPGA 2W80C 4N58A 2GMYA 4GCSA 4KR4A 2Y0HA 2JN8A 1E54A 3RBHA 8PRNA 5ADXK 4AYDC 3UU2A 1IZNB 2PFXA 2XE1A 1P8CA 3AA0B 3FYXA 3O0EA 2KXPA 4AFKA 3LK3B 4GHBA 4AYID 2O4VA 2IJCA 1THQA 1IZNA 3AA0A 1GFMA 1KNCA 2JMMA 1P4TA 2W81C 4FZMA 2LFUA 2ZFGA 4XNKA 1BT9A 4O3WA 1ZHZA 2X27X 1MM4A 4O3ZA 3T24A 1ZHTA 1VKEA 1QJ9A 3VZUX 4AKRA 5GV0A 3POUA 4GCQA 5DIKA 3POQA 3SY7A 2K4TA 4QQ1A 4C69X 1PHOA 4FZLA 5IYUA 4XNLA 4E1SA 3PORA 3LK42 4O3XB 3VY8X 4AKRB 5PRNA 5DIPA 2PORA 1GFPA 2GE4A 3AAEB 1Q9FA 4PUXA 4O4UA 1LW1A 3LK41 2XMXA 3DA3A 2KZ7A 3POXA 4FESA 4FMSA 5T5FA 3AA7A 2OYOA 2MNHA 4RJWA 3SYSA 5ADXL 2Q0TA 1Q9GA 1ME5A 4KR8A 2ERVA 4FOZA 4U9CA 3NSGA 3HWBA 4JCHA 4O4XA 2Y0LA 4D5UA 4RLBA 1PRNA 4O49A 2XE2A 4LSIA 3JTYA 4RL9A 5DL5A 3V8UA 2KC0A 2CWQA 1ZHXA 2Y2XA 4AYEC 4LSFA 4AYMC 3LK3A 4FT6A 3AAAA 3AA1B 2N2MA 3D7IA 3AA7B 2KDYA 1OSMA 2OMFA 4FRTA 2KZ7B 5FVNA 3UAQA 1GFNA 2OUWA 3VE1A 4Z3TA 4FSOA 4GF4A 2ES9A 3PQUA 3VE2A 5D5DA 4D65A 3AAEA 2ZLDA 2PRRA 2AF7A 2YPVA 4E1TA 3SYBA 1QJ8A 3DA4A 1HXTA 2PRNA 3PRNA 1BH3A 3T0SA 4AKMA 3HOLA 2Y7SA 2XE3A 3G7GA 1GFQA 3SY9A 2FGQX 3K19A 5EE2A 4AYNA 4GCPA 4N59A 2XE5A 3HOEA 4AZLA 4JFBA 2FGRA 6PRNA 4B61A 5DL8A 1YS5A 2MHLA 3KVDD 2M07A 3LK2B 4G76A 1MPFA 2F1VA 4FSPA 3TZGA 4RLCA 1HXUA 4AUIA 1ZHWA 1MM5A 2M06A 2N2LA 3QRAA 4RJXA 3AA1A 1QJPA 3AAAB 2QTKA 3AA6A 1BXWA 3VZTX 4D64A 2KXPB 2J1NA 5JDPA 3SZDA 2ODJA 2LHFA 3C5OA 4O3YA 2QEUA 4BUMX 4KRAA 2F1TA 5AFUK 7PRNA 3LVYA 3WI5A 3T20A 5G26A 5AFUL 2Y0KA 1GU9A 1HXXA 3AA6B 3WI4A 2J4UP 3PQSA 3VY9X 2O4DA 3BEYA 3EMNX 2XTRA 5DL6A 2XTQA 3HW9A 3VZWX 2XG6A 4FRXA 1GFOA 3GP6A 4LSEA 1ZHYA 4G9QA 3A2SX 3LK2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKR A;  3AA1 A;  3AAA B;  3LK3 A;  3AA6 A;  3AAA A;  2KXP B;  3AA1 B;  3AA7 B;  3LK4 2;  2KZ7 B;  4AKR B;  3AAE B;  3AAE A;  5ADX K;  3LK4 1;  2KZ7 A;  5AFU K;  1IZN B;  3AA0 B;  3AA7 A;  5AFU L;  5ADX L;  2KXP A;  3AA6 B;  3LK3 B;  1IZN A;  3AA0 A;  3LK2 B;  3LK2 A; 
#chains in the Genus database with same CATH topology
 3C1L A;  4FZN A;  4C4V A;  1G90 A;  4FUV A;  3QRC A;  1OPF A;  1ORM A;  2K0L A;  3A0H O;  3SZV A;  4F4B A;  1H6S 1;  2YNK A;  5DL7 A;  4LSH A;  4G75 A;  4UB6 O;  3UPG A;  2W80 C;  4N58 A;  2GMY A;  4GCS A;  4KR4 A;  2Y0H A;  2JN8 A;  1E54 A;  3RBH A;  8PRN A;  5ADX K;  4AYD C;  3UU2 A;  1IZN B;  2PFX A;  2F1C X;  1P8C A;  2XE1 A;  3AA0 B;  3FYX A;  3O0E A;  2KXP A;  2IWV A;  4AFK A;  3LK3 B;  4GHB A;  4AYI D;  2O4V A;  3PGU A;  2IJC A;  1THQ A;  1IZN A;  3AA0 A;  1GFM A;  1KNC A;  2JMM A;  1P4T A;  2W81 C;  4FZM A;  2LFU A;  2ZFG A;  1T16 A;  1BT9 A;  4K3C A;  1ZHZ A;  2X27 X;  1MM4 A;  4O3Z A;  4O3W A;  3T24 A;  1ZHT A;  1VKE A;  1QJ9 A;  4XNK A;  3VZU X;  4AKR A;  5GV0 A;  3POU A;  4GCQ A;  5DIK A;  3POQ A;  2X9K A;  3SY7 A;  5H2F O;  2K4T A;  4QQ1 A;  4C69 X;  1PHO A;  4FZL A;  5IYU A;  4XNL A;  4E1S A;  3POR A;  3A0B O;  3LK4 2;  4O3X B;  3VY8 X;  2R89 A;  4AKR B;  5PRN A;  5DIP A;  2POR A;  1GFP A;  2GE4 A;  3AAE B;  3JCU O;  1Q9F A;  4PUX A;  4O4U A;  1LW1 A;  3LK4 1;  2XMX A;  3DA3 A;  2KZ7 A;  3POX A;  4FES A;  4FMS A;  5T5F A;  3AA7 A;  4N75 A;  2OYO A;  2MNH A;  2R4P A;  3DZM A;  4RJW A;  2Q0T A;  1Q9G A;  4PJ0 O;  3SYS A;  5ADX L;  1ME5 A;  3DWN A;  4KR8 A;  5G39 A;  2ERV A;  4FOZ A;  4U9C A;  3NSG A;  3HWB A;  4JCH A;  4O4X A;  2Y0L A;  4D5U A;  4RLB A;  1PRN A;  5KAF O;  4O49 A;  5KAI O;  2XE2 A;  4FQE A;  4LSI A;  3NJT A;  3JTY A;  4RL9 A;  5DL5 A;  5E79 O;  3V8U A;  2KC0 A;  2CWQ A;  1ZHX A;  2Y2X A;  5GTH O;  4AYE C;  4LSF A;  3PF1 A;  4AYM C;  3LK3 A;  2R8A A;  3DWO X;  3AAA A;  2R4L A;  3AA1 B;  3KZI O;  4FT6 A;  2N2M A;  3D7I A;  4C4V B;  3AA7 B;  2KDY A;  1OSM A;  2OMF A;  4FRT A;  2KZ7 B;  2AXT O;  5FVN A;  1GFN A;  2OUW A;  3UAQ A;  3VE1 A;  4FSO A;  3BRZ A;  4GF4 A;  4Z3T A;  2ES9 A;  2WVP A;  3PQU A;  3VE2 A;  5D5D A;  4D65 A;  4D64 A;  3AAE A;  2JQY A;  2ZLD A;  2PRR A;  2AF7 A;  2YPV A;  4E1T A;  5G3A A;  3SYB A;  1QJ8 A;  3DA4 A;  1HXT A;  2PRN A;  3PRN A;  1BH3 A;  2R4O A;  3T0S A;  4AKM A;  3HOL A;  5GTI O;  2Y7S A;  5B66 O;  2XE3 A;  3G7G A;  1GFQ A;  3SY9 A;  2FGQ X;  3K19 A;  5EE2 A;  4AYN A;  4GCP A;  4N59 A;  2XE5 A;  3HOE A;  4AZL A;  4JFB A;  3BRY A;  4K3B A;  2FGR A;  6PRN A;  4B61 A;  5DL8 A;  1YS5 A;  2MHL A;  3KVD D;  2M07 A;  3LK2 B;  4G76 A;  1MPF A;  2F1V A;  4FSP A;  5TIS O;  3TZG A;  2R88 A;  4RLC A;  1HXU A;  4AUI A;  1ZHW A;  1MM5 A;  2M06 A;  2N2L A;  3QRA A;  4RJX A;  3AA1 A;  1QJP A;  3AAA B;  2QTK A;  3AA6 A;  1BXW A;  3PGR A;  3VZT X;  2KXP B;  2J1N A;  2R4N A;  5JDP A;  5B5E O;  4CTD A;  3SZD A;  2ODJ A;  4N74 A;  4IL6 O;  2LHF A;  2WJQ A;  3C5O A;  4PR7 A;  3WU2 O;  4UB8 O;  2IWW A;  5G38 A;  4O3Y A;  2QEU A;  1T1L A;  4KRA A;  4BUM X;  2F1T A;  5AFU K;  3BS0 A;  3LVY A;  3WI5 A;  7PRN A;  5G26 A;  5AFU L;  3T20 A;  2Y0K A;  1GU9 A;  1HXX A;  3AA6 B;  3WI4 A;  2J4U P;  3PQS A;  3VY9 X;  3PGS A;  2O4D A;  3BEY A;  3EMN X;  2XTR A;  5DL6 A;  2XTQ A;  2WJR A;  4C00 A;  3HW9 A;  3VZW X;  2XG6 A;  4FRX A;  1S5L O;  1GFO A;  3GP6 A;  4LSE A;  1ZHY A;  4G9Q A;  3A2S X;  3LK2 A; 
#chains in the Genus database with same CATH homology
 3C1L A;  4FZN A;  1G90 A;  4FUV A;  3QRC A;  1OPF A;  1ORM A;  2K0L A;  3SZV A;  4F4B A;  1H6S 1;  2YNK A;  5DL7 A;  4LSH A;  4G75 A;  3UPG A;  2W80 C;  4N58 A;  2GMY A;  4GCS A;  4KR4 A;  2Y0H A;  2JN8 A;  1E54 A;  3RBH A;  8PRN A;  5ADX K;  4AYD C;  3UU2 A;  1IZN B;  2PFX A;  2XE1 A;  1P8C A;  3AA0 B;  3FYX A;  3O0E A;  2KXP A;  4AFK A;  3LK3 B;  4GHB A;  4AYI D;  2O4V A;  2IJC A;  1THQ A;  1IZN A;  3AA0 A;  1GFM A;  1KNC A;  2JMM A;  1P4T A;  2W81 C;  4FZM A;  2LFU A;  2ZFG A;  4XNK A;  1BT9 A;  4O3W A;  1ZHZ A;  2X27 X;  1MM4 A;  4O3Z A;  3T24 A;  1ZHT A;  1VKE A;  1QJ9 A;  3VZU X;  4AKR A;  5GV0 A;  3POU A;  4GCQ A;  5DIK A;  3POQ A;  3SY7 A;  2K4T A;  4QQ1 A;  4C69 X;  1PHO A;  4FZL A;  5IYU A;  4XNL A;  4E1S A;  3POR A;  3LK4 2;  4O3X B;  3VY8 X;  4AKR B;  5PRN A;  5DIP A;  2POR A;  1GFP A;  2GE4 A;  3AAE B;  1Q9F A;  4PUX A;  4O4U A;  1LW1 A;  3LK4 1;  2XMX A;  3DA3 A;  2KZ7 A;  3POX A;  4FES A;  4FMS A;  5T5F A;  3AA7 A;  2OYO A;  2MNH A;  4RJW A;  3SYS A;  5ADX L;  2Q0T A;  1Q9G A;  1ME5 A;  4KR8 A;  2ERV A;  4FOZ A;  4U9C A;  3NSG A;  3HWB A;  4JCH A;  4O4X A;  2Y0L A;  4D5U A;  4RLB A;  1PRN A;  4O49 A;  2XE2 A;  4LSI A;  3JTY A;  4RL9 A;  5DL5 A;  3V8U A;  2KC0 A;  2CWQ A;  1ZHX A;  2Y2X A;  4AYE C;  4LSF A;  4AYM C;  3LK3 A;  4FT6 A;  3AAA A;  3AA1 B;  2N2M A;  3D7I A;  3AA7 B;  2KDY A;  1OSM A;  2OMF A;  4FRT A;  2KZ7 B;  5FVN A;  3UAQ A;  1GFN A;  2OUW A;  3VE1 A;  4Z3T A;  4FSO A;  4GF4 A;  2ES9 A;  3PQU A;  3VE2 A;  5D5D A;  4D65 A;  3AAE A;  2ZLD A;  2PRR A;  2AF7 A;  2YPV A;  4E1T A;  3SYB A;  1QJ8 A;  3DA4 A;  1HXT A;  2PRN A;  3PRN A;  1BH3 A;  3T0S A;  4AKM A;  3HOL A;  2Y7S A;  2XE3 A;  3G7G A;  1GFQ A;  3SY9 A;  2FGQ X;  3K19 A;  5EE2 A;  4AYN A;  4GCP A;  4N59 A;  2XE5 A;  3HOE A;  4AZL A;  4JFB A;  2FGR A;  6PRN A;  4B61 A;  5DL8 A;  1YS5 A;  2MHL A;  3KVD D;  2M07 A;  3LK2 B;  4G76 A;  1MPF A;  2F1V A;  4FSP A;  3TZG A;  4RLC A;  1HXU A;  4AUI A;  1ZHW A;  1MM5 A;  2M06 A;  2N2L A;  3QRA A;  4RJX A;  3AA1 A;  1QJP A;  3AAA B;  2QTK A;  3AA6 A;  1BXW A;  3VZT X;  4D64 A;  2KXP B;  2J1N A;  5JDP A;  3SZD A;  2ODJ A;  2LHF A;  3C5O A;  4O3Y A;  2QEU A;  4BUM X;  4KRA A;  2F1T A;  5AFU K;  7PRN A;  3LVY A;  3WI5 A;  3T20 A;  5G26 A;  5AFU L;  2Y0K A;  1GU9 A;  1HXX A;  3AA6 B;  3WI4 A;  2J4U P;  3PQS A;  3VY9 X;  2O4D A;  3BEY A;  3EMN X;  2XTR A;  5DL6 A;  2XTQ A;  3HW9 A;  3VZW X;  2XG6 A;  4FRX A;  1GFO A;  3GP6 A;  4LSE A;  1ZHY A;  4G9Q A;  3A2S X;  3LK2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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