3AA7A

Crystal structure of actin capping protein
Total Genus 84
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 84
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa7A02
3AAAB 3LK41 3AA6B 5AFUL 2KZ7B 3AAAA 5ADXL 2KXPB 3AA6A 1IZNB 2KZ7A 4AKRB 3LK3B 3AA0B 2KXPA 3AA7B 1IZNA 4AKRA 3LK3A 3AA1B 3AAEB 3LK42 3AA0A 5AFUK 3AA7A 3AA1A 5ADXK 3AAEA 3LK2B 3LK2A
chains in the Genus database with same CATH superfamily
3SY9A 5H2FO 1MM5A 2KXPB 4FRTA 1QJPA 1Q9FA 4GCPA 2XG6A 1GFQA 1ZHWA 2Y0HA 2F1TA 2Y0KA 5D5DA 4K3BA 3HW9A 4AYEC 2N2LA 4N58A 4GCSA 4D64A 3AAAB 4FUVA 1HXXA 3O0EA 5G38A 2Y7SA 1HXUA 3AA7B 3VY8X 5G39A 4E1TA 2CWQA 2JMMA 2WVPA 4O49A 4O3YA 5ADXK 1GFOA 1THQA 4O3XB 3C5OA 3QRAA 1S5LO 2OMFA 3T0SA 1T16A 3SZVA 2AXTO 4AYID 1ORMA 1GFPA 2KZ7A 4FOZA 4AFKA 2WJRA 2FGRA 4C4VB 3PQUA 3V8UA 2F1CX 4AZLA 3T20A 1ZHYA 1ZHTA 2MNHA 4XNKA 2R4PA 2K4TA 2YNKA 4FSPA 5B66O 3DWOX 2XE3A 5ADXL 1Q9GA 3UPGA 5B5EO 2OUWA 2XE1A 4E1SA 2W81C 2JQYA 4UB8O 2R89A 4N59A 3PF1A 3AAEA 5DIPA 4FESA 3VZUX 3A0BO 3DA4A 4KR4A 4F4BA 2IJCA 2O4VA 4UB6O 4JFBA 3TZGA 3GP6A 4C69X 3VZWX 1HXTA 2YPVA 1IZNA 3PGRA 4Z3TA 4LSIA 2R4LA 3LK42 3PGSA 4K3CA 3C1LA 5DL6A 3AA1A 5T5FA 4AYMC 3D7IA 1YS5A 4O4XA 4GF4A 4KR8A 3PGUA 4FSOA 3POXA 4RJXA 5PRNA 4RL9A 4O3WA 4GHBA 1BXWA 2LHFA 2PFXA 2IWWA 2QTKA 4BUMX 4D65A 4N74A 1BT9A 3AAAA 3RBHA 2IWVA 2FGQX 2M07A 2M06A 4N75A 4FT6A 3WI4A 3SYBA 1GFNA 4KRAA 2AF7A 1GU9A 2GE4A 4G9QA 3LVYA 6PRNA 8PRNA 4O4UA 1QJ8A 2GMYA 1G90A 3LK3B 3UU2A 3VE2A 3JCUO 5IYUA 2QEUA 2ES9A 4C4VA 3KZIO 5GV0A 4FQEA 1VKEA 5KAFO 2R4NA 3VY9X 2ZFGA 4G76A 1QJ9A 2XMXA 3SZDA 1ZHZA 4LSEA 4AKRB 3BRZA 3PQSA 5FVNA 2F1VA 5DL7A 3POQA 1PHOA 2KDYA 2LFUA 2J4UP 3AA6B 3DA3A 2X27X 2J1NA 4IL6O 5DL5A 4AUIA 2ERVA 3AAEB 1ME5A 3PORA 4FZLA 3AA0A 4AYNA 4AYDC 1PRNA 4U9CA 3KVDD 4XNLA 3HWBA 1P8CA 1P4TA 3BS0A 1IZNB 7PRNA 1E54A 4QQ1A 5JDPA 4RLCA 3A0HO 2KXPA 2W80C 4RLBA 3A2SX 4PR7A 3VZTX 3EMNX 2X9KA 3LK2B 3K19A 5KAIO 4FMSA 1T1LA 2XTRA 3SY7A 2XTQA 2PRRA 5TISO 4AKMA 2ODJA 2OYOA 2ZLDA 5DIKA 5E79O 3AA7A 1KNCA 3DWNA 2PORA 4FZMA 4CTDA 5DL8A 2K0LA 3G7GA 3LK41 4D5UA 2Y2XA 3LK3A 5AFUK 3BEYA 4RJWA 3NJTA 2XE2A 3NSGA 3UAQA 4C00A 1BH3A 5G3AA 2N2MA 2PRNA 4LSHA 2KZ7B 3HOLA 1OPFA 3SYSA 1MPFA 1GFMA 5GTHO 4AKRA 4O3ZA 2MHLA 1ZHXA 3QRCA 4B61A 2Q0TA 3JTYA 2R88A 1OSMA 2JN8A 3HOEA 3BRYA 1MM4A 5AFUL 5GTIO 3DZMA 3AA6A 4FRXA 2R8AA 4JCHA 3WU2O 2Y0LA 2R4OA 5G26A 4PJ0O 2XE5A 4FZNA 2WJQA 4PUXA 1H6S1 2KC0A 3POUA 4G75A 3PRNA 3FYXA 2O4DA 3AA0B 3WI5A 5EE2A 4LSFA 3AA1B 3VE1A 1LW1A 4GCQA 3T24A 3LK2A
chains in the Genus database with same CATH topology
3SY9A 2O4VA 5DL8A 2K0LA 2ZFGA 3G7GA 3LK41 3VY9X 4G76A 1MM5A 1QJ9A 4JFBA 2XMXA 3TZGA 2KXPB 3SZDA 1ZHZA 4LSEA 4D5UA 2Y2XA 4AKRB 3GP6A 4FRTA 1QJPA 4C69X 3VZWX 1HXTA 1Q9FA 1IZNA 2XG6A 2YPVA 1GFQA 3LK3A 1ZHWA 2Y0HA 3PQSA 4GCPA 4LSIA 4Z3TA 2F1TA 3LK42 2Y0KA 5FVNA 3C1LA 2F1VA 5AFUK 5DL7A 3POQA 5DL6A 3BEYA 3AA1A 4RJWA 5T5FA 1PHOA 4AYMC 3D7IA 5D5DA 2KDYA 2XE2A 1YS5A 3NSGA 4O4XA 3UAQA 3HW9A 2LFUA 1BH3A 2N2LA 4GF4A 2N2MA 2PRNA 4KR8A 4FSOA 3POXA 4GCSA 4N58A 4RJXA 5PRNA 4D64A 3AAAB 2J4UP 4LSHA 4FUVA 1HXXA 3AA6B 3DA3A 4RL9A 4O3WA 2KZ7B 3HOLA 1OPFA 1BXWA 2X27X 3O0EA 4GHBA 3SYSA 1MPFA 2J1NA 2LHFA 5DL5A 2Y7SA 4AUIA 1HXUA 1GFMA 3AA7B 4AKRA 2ERVA 3VY8X 3AAEB 1ME5A 2CWQA 4E1TA 2PFXA 3PORA 4FZLA 3AA0A 4O3ZA 2JMMA 2MHLA 4AYNA 1ZHXA 4O49A 3QRCA 4O3YA 4AYDC 5ADXK 1GFOA 4B61A 2QTKA 2Q0TA 1PRNA 3JTYA 4BUMX 1THQA 4O3XB 3C5OA 1OSMA 3QRAA 4U9CA 2OMFA 2JN8A 3T0SA 4D65A 4AYEC 3HOEA 3KVDD 4XNLA 1MM4A 3SZVA 3HWBA 5AFUL 4AYID 1P8CA 1ORMA 1P4TA 1BT9A 3AAAA 3RBHA 1GFPA 3AA6A 1IZNB 1E54A 7PRNA 4QQ1A 5JDPA 2KZ7A 4RLCA 4FRXA 4FOZA 2FGQX 4JCHA 2M07A 2M06A 4AFKA 2KXPA 4FT6A 2W80C 2Y0LA 3WI4A 2FGRA 3SYBA 4RLBA 1GFNA 5G26A 3A2SX 3PQUA 3V8UA 3VZTX 3EMNX 4AZLA 2XE5A 3T20A 1ZHYA 3LK2B 3K19A 4FZNA 1ZHTA 2MNHA 4XNKA 4FMSA 4KRAA 2XTRA 2AF7A 1GU9A 2K4TA 3SY7A 2GE4A 4G9QA 2YNKA 4FSPA 4PUXA 1H6S1 3LVYA 2KC0A 2XE3A 6PRNA 8PRNA 3POUA 5ADXL 4O4UA 1Q9GA 2XTQA 2PRRA 1QJ8A 4G75A 3UPGA 4AKMA 2GMYA 2ODJA 3PRNA 1G90A 3FYXA 3LK3B 3UU2A 2O4DA 4F4BA 2OUWA 2XE1A 2OYOA 3AA0B 2ZLDA 3VE2A 4E1SA 3WI5A 5EE2A 4LSFA 3AA1B 5IYUA 2QEUA 5DIKA 2ES9A 2W81C 3AA7A 3VE1A 5GV0A 1LW1A 4N59A 1VKEA 3AAEA 1KNCA 5DIPA 4FESA 3VZUX 4GCQA 3DA4A 2PORA 4KR4A 3T24A 4FZMA 3LK2A 2IJCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA B;  3LK4 1;  3AA6 B;  5AFU L;  2KZ7 B;  3AAA A;  5ADX L;  2KXP B;  3AA6 A;  1IZN B;  2KZ7 A;  4AKR B;  3LK3 B;  3AA0 B;  2KXP A;  3AA7 B;  1IZN A;  4AKR A;  3LK3 A;  3AA1 B;  3AAE B;  3LK4 2;  3AA0 A;  5AFU K;  3AA7 A;  3AA1 A;  5ADX K;  3AAE A;  3LK2 B;  3LK2 A; 
#chains in the Genus database with same CATH topology
 3SY9 A;  5H2F O;  1MM5 A;  2KXP B;  4FRT A;  1QJP A;  1Q9F A;  4GCP A;  2XG6 A;  1GFQ A;  1ZHW A;  2Y0H A;  2F1T A;  2Y0K A;  5D5D A;  4K3B A;  3HW9 A;  4AYE C;  2N2L A;  4N58 A;  4GCS A;  4D64 A;  3AAA B;  4FUV A;  1HXX A;  3O0E A;  5G38 A;  2Y7S A;  1HXU A;  3AA7 B;  3VY8 X;  5G39 A;  4E1T A;  2CWQ A;  2JMM A;  2WVP A;  4O49 A;  4O3Y A;  5ADX K;  1GFO A;  1THQ A;  4O3X B;  3C5O A;  3QRA A;  1S5L O;  2OMF A;  3T0S A;  1T16 A;  3SZV A;  2AXT O;  4AYI D;  1ORM A;  1GFP A;  2KZ7 A;  4FOZ A;  4AFK A;  2WJR A;  2FGR A;  4C4V B;  3PQU A;  3V8U A;  2F1C X;  4AZL A;  3T20 A;  1ZHY A;  1ZHT A;  2MNH A;  4XNK A;  2R4P A;  2K4T A;  2YNK A;  4FSP A;  5B66 O;  3DWO X;  2XE3 A;  5ADX L;  1Q9G A;  3UPG A;  5B5E O;  2OUW A;  2XE1 A;  4E1S A;  2W81 C;  2JQY A;  4UB8 O;  2R89 A;  4N59 A;  3PF1 A;  3AAE A;  5DIP A;  4FES A;  3VZU X;  3A0B O;  3DA4 A;  4KR4 A;  4F4B A;  2IJC A;  2O4V A;  4UB6 O;  4JFB A;  3TZG A;  3GP6 A;  4C69 X;  3VZW X;  1HXT A;  2YPV A;  1IZN A;  3PGR A;  4Z3T A;  4LSI A;  2R4L A;  3LK4 2;  3PGS A;  4K3C A;  3C1L A;  5DL6 A;  3AA1 A;  5T5F A;  4AYM C;  3D7I A;  1YS5 A;  4O4X A;  4GF4 A;  4KR8 A;  3PGU A;  4FSO A;  3POX A;  4RJX A;  5PRN A;  4RL9 A;  4O3W A;  4GHB A;  1BXW A;  2LHF A;  2PFX A;  2IWW A;  2QTK A;  4BUM X;  4D65 A;  4N74 A;  1BT9 A;  3AAA A;  3RBH A;  2IWV A;  2FGQ X;  2M07 A;  2M06 A;  4N75 A;  4FT6 A;  3WI4 A;  3SYB A;  1GFN A;  4KRA A;  2AF7 A;  1GU9 A;  2GE4 A;  4G9Q A;  3LVY A;  6PRN A;  8PRN A;  4O4U A;  1QJ8 A;  2GMY A;  1G90 A;  3LK3 B;  3UU2 A;  3VE2 A;  3JCU O;  5IYU A;  2QEU A;  2ES9 A;  4C4V A;  3KZI O;  5GV0 A;  4FQE A;  1VKE A;  5KAF O;  2R4N A;  3VY9 X;  2ZFG A;  4G76 A;  1QJ9 A;  2XMX A;  3SZD A;  1ZHZ A;  4LSE A;  4AKR B;  3BRZ A;  3PQS A;  5FVN A;  2F1V A;  5DL7 A;  3POQ A;  1PHO A;  2KDY A;  2LFU A;  2J4U P;  3AA6 B;  3DA3 A;  2X27 X;  2J1N A;  4IL6 O;  5DL5 A;  4AUI A;  2ERV A;  3AAE B;  1ME5 A;  3POR A;  4FZL A;  3AA0 A;  4AYN A;  4AYD C;  1PRN A;  4U9C A;  3KVD D;  4XNL A;  3HWB A;  1P8C A;  1P4T A;  3BS0 A;  1IZN B;  7PRN A;  1E54 A;  4QQ1 A;  5JDP A;  4RLC A;  3A0H O;  2KXP A;  2W80 C;  4RLB A;  3A2S X;  4PR7 A;  3VZT X;  3EMN X;  2X9K A;  3LK2 B;  3K19 A;  5KAI O;  4FMS A;  1T1L A;  2XTR A;  3SY7 A;  2XTQ A;  2PRR A;  5TIS O;  4AKM A;  2ODJ A;  2OYO A;  2ZLD A;  5DIK A;  5E79 O;  3AA7 A;  1KNC A;  3DWN A;  2POR A;  4FZM A;  4CTD A;  5DL8 A;  2K0L A;  3G7G A;  3LK4 1;  4D5U A;  2Y2X A;  3LK3 A;  5AFU K;  3BEY A;  4RJW A;  3NJT A;  2XE2 A;  3NSG A;  3UAQ A;  4C00 A;  1BH3 A;  5G3A A;  2N2M A;  2PRN A;  4LSH A;  2KZ7 B;  3HOL A;  1OPF A;  3SYS A;  1MPF A;  1GFM A;  5GTH O;  4AKR A;  4O3Z A;  2MHL A;  1ZHX A;  3QRC A;  4B61 A;  2Q0T A;  3JTY A;  2R88 A;  1OSM A;  2JN8 A;  3HOE A;  3BRY A;  1MM4 A;  5AFU L;  5GTI O;  3DZM A;  3AA6 A;  4FRX A;  2R8A A;  4JCH A;  3WU2 O;  2Y0L A;  2R4O A;  5G26 A;  4PJ0 O;  2XE5 A;  4FZN A;  2WJQ A;  4PUX A;  1H6S 1;  2KC0 A;  3POU A;  4G75 A;  3PRN A;  3FYX A;  2O4D A;  3AA0 B;  3WI5 A;  5EE2 A;  4LSF A;  3AA1 B;  3VE1 A;  1LW1 A;  4GCQ A;  3T24 A;  3LK2 A; 
#chains in the Genus database with same CATH homology
 3SY9 A;  2O4V A;  5DL8 A;  2K0L A;  2ZFG A;  3G7G A;  3LK4 1;  3VY9 X;  4G76 A;  1MM5 A;  1QJ9 A;  4JFB A;  2XMX A;  3TZG A;  2KXP B;  3SZD A;  1ZHZ A;  4LSE A;  4D5U A;  2Y2X A;  4AKR B;  3GP6 A;  4FRT A;  1QJP A;  4C69 X;  3VZW X;  1HXT A;  1Q9F A;  1IZN A;  2XG6 A;  2YPV A;  1GFQ A;  3LK3 A;  1ZHW A;  2Y0H A;  3PQS A;  4GCP A;  4LSI A;  4Z3T A;  2F1T A;  3LK4 2;  2Y0K A;  5FVN A;  3C1L A;  2F1V A;  5AFU K;  5DL7 A;  3POQ A;  5DL6 A;  3BEY A;  3AA1 A;  4RJW A;  5T5F A;  1PHO A;  4AYM C;  3D7I A;  5D5D A;  2KDY A;  2XE2 A;  1YS5 A;  3NSG A;  4O4X A;  3UAQ A;  3HW9 A;  2LFU A;  1BH3 A;  2N2L A;  4GF4 A;  2N2M A;  2PRN A;  4KR8 A;  4FSO A;  3POX A;  4GCS A;  4N58 A;  4RJX A;  5PRN A;  4D64 A;  3AAA B;  2J4U P;  4LSH A;  4FUV A;  1HXX A;  3AA6 B;  3DA3 A;  4RL9 A;  4O3W A;  2KZ7 B;  3HOL A;  1OPF A;  1BXW A;  2X27 X;  3O0E A;  4GHB A;  3SYS A;  1MPF A;  2J1N A;  2LHF A;  5DL5 A;  2Y7S A;  4AUI A;  1HXU A;  1GFM A;  3AA7 B;  4AKR A;  2ERV A;  3VY8 X;  3AAE B;  1ME5 A;  2CWQ A;  4E1T A;  2PFX A;  3POR A;  4FZL A;  3AA0 A;  4O3Z A;  2JMM A;  2MHL A;  4AYN A;  1ZHX A;  4O49 A;  3QRC A;  4O3Y A;  4AYD C;  5ADX K;  1GFO A;  4B61 A;  2QTK A;  2Q0T A;  1PRN A;  3JTY A;  4BUM X;  1THQ A;  4O3X B;  3C5O A;  1OSM A;  3QRA A;  4U9C A;  2OMF A;  2JN8 A;  3T0S A;  4D65 A;  4AYE C;  3HOE A;  3KVD D;  4XNL A;  1MM4 A;  3SZV A;  3HWB A;  5AFU L;  4AYI D;  1P8C A;  1ORM A;  1P4T A;  1BT9 A;  3AAA A;  3RBH A;  1GFP A;  3AA6 A;  1IZN B;  1E54 A;  7PRN A;  4QQ1 A;  5JDP A;  2KZ7 A;  4RLC A;  4FRX A;  4FOZ A;  2FGQ X;  4JCH A;  2M07 A;  2M06 A;  4AFK A;  2KXP A;  4FT6 A;  2W80 C;  2Y0L A;  3WI4 A;  2FGR A;  3SYB A;  4RLB A;  1GFN A;  5G26 A;  3A2S X;  3PQU A;  3V8U A;  3VZT X;  3EMN X;  4AZL A;  2XE5 A;  3T20 A;  1ZHY A;  3LK2 B;  3K19 A;  4FZN A;  1ZHT A;  2MNH A;  4XNK A;  4FMS A;  4KRA A;  2XTR A;  2AF7 A;  1GU9 A;  2K4T A;  3SY7 A;  2GE4 A;  4G9Q A;  2YNK A;  4FSP A;  4PUX A;  1H6S 1;  3LVY A;  2KC0 A;  2XE3 A;  6PRN A;  8PRN A;  3POU A;  5ADX L;  4O4U A;  1Q9G A;  2XTQ A;  2PRR A;  1QJ8 A;  4G75 A;  3UPG A;  4AKM A;  2GMY A;  2ODJ A;  3PRN A;  1G90 A;  3FYX A;  3LK3 B;  3UU2 A;  2O4D A;  4F4B A;  2OUW A;  2XE1 A;  2OYO A;  3AA0 B;  2ZLD A;  3VE2 A;  4E1S A;  3WI5 A;  5EE2 A;  4LSF A;  3AA1 B;  5IYU A;  2QEU A;  5DIK A;  2ES9 A;  2W81 C;  3AA7 A;  3VE1 A;  5GV0 A;  1LW1 A;  4N59 A;  1VKE A;  3AAE A;  1KNC A;  5DIP A;  4FES A;  3VZU X;  4GCQ A;  3DA4 A;  2POR A;  4KR4 A;  3T24 A;  4FZM A;  3LK2 A;  2IJC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...