3AA7A

Crystal structure of actin capping protein
Total Genus 84
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
269
structure length
269
Chain Sequence
VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 84
structure length 269
sequence length 269
ec nomenclature
pdb deposition date 2009-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aa7A01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aa7A02
2KZ7B 3AAEB 1IZNB 4AKRB 3AA7A 5AFUL 2KXPA 3AAAA 2KXPB 3LK2B 3LK3A 4AKRA 3LK42 3LK3B 3AA6A 3LK2A 3LK41 3AAAB 3AA1B 1IZNA 3AAEA 2KZ7A 3AA0B 3AA7B 3AA1A 5ADXL 5AFUK 3AA6B 3AA0A 5ADXK
chains in the Genus database with same CATH superfamily
1E54A 3A0HO 3GP6A 4D5UA 4C4VB 1IZNB 2WVPA 3PORA 2O4DA 2GE4A 1HXTA 2X27X 3PGUA 2R8AA 4GHBA 2KXPA 1MM5A 4B61A 4C00A 2M07A 2M06A 4RJXA 4O4XA 2PRNA 1QJ8A 3VE1A 1VKEA 2XE2A 4O4UA 1T1LA 3VZTX 3EMNX 1PHOA 5G39A 4C69X 4RL9A 4PJ0O 3JCUO 5GV0A 4FZLA 1P8CA 4FRTA 4O3ZA 3UPGA 2MHLA 2OUWA 2JQYA 2AF7A 2XTRA 1IZNA 2OMFA 3AAAB 3PGRA 2X9KA 4GCPA 2R4NA 4JCHA 1P4TA 4UB8O 5TISO 3AA0B 1ZHXA 4N59A 4AZLA 1HXXA 1GFQA 1HXUA 4RLCA 3T0SA 3WI5A 2F1TA 3VZWX 3DA4A 3T24A 5AFUK 4E1SA 1G90A 5G26A 1THQA 1ZHYA 4RJWA 4FSPA 3SYSA 2LFUA 2Y0HA 2J1NA 4KR8A 4AYDC 5DIKA 4AYNA 5G3AA 1PRNA 2XMXA 2YPVA 1LW1A 1GFNA 5KAFO 5AFUL 2R4LA 2ZFGA 3AAAA 3C5OA 2LHFA 5DL7A 3BS0A 2OYOA 4PUXA 2K0LA 2Y2XA 3A0BO 3HW9A 3LK2B 3SZVA 3LK3A 2J4UP 2ERVA 1BT9A 4FESA 1GU9A 4O3YA 4XNLA 3VZUX 4AUIA 4KR4A 2R4OA 4FT6A 4GCQA 1OPFA 1ZHZA 1Q9GA 3LK41 1GFOA 4G9QA 3PRNA 3PQSA 4D65A 2KZ7A 2F1VA 2XG6A 4IL6O 2QTKA 4FRXA 3VY8X 3AA7B 3AA1A 4O3XB 4E1TA 2IWWA 3PQUA 3SY9A 5ADXL 4D64A 3AA6B 4BUMX 3DZMA 3RBHA 3K19A 5ADXK 4N74A 2KZ7B 4LSFA 2O4VA 3AAEB 4AFKA 2PORA 3AA7A 5H2FO 3VY9X 2JMMA 3BRYA 3LVYA 2KC0A 2XE1A 4K3CA 3WU2O 1OSMA 2MNHA 5DL6A 3DWOX 5E79O 3T20A 1T16A 4AKMA 3DWNA 3UAQA 1KNCA 4K3BA 3QRCA 4XNKA 4AKRA 2Y0KA 2Q0TA 5EE2A 4N58A 4QQ1A 3UU2A 5G38A 2XE3A 1QJ9A 3LK42 4FQEA 4O3WA 5GTIO 4Z3TA 3AA6A 2IJCA 3LK2A 2QEUA 5FVNA 2ES9A 4FSOA 1BH3A 3NJTA 1QJPA 3NSGA 4RLBA 3AAEA 3BRZA 3QRAA 5KAIO 3SZDA 4LSEA 5B5EO 3PGSA 4G75A 5JDPA 3SY7A 3JTYA 1BXWA 2FGQX 4O49A 2AXTO 2F1CX 4FMSA 4JFBA 2PRRA 2W81C 1ORMA 1H6S1 3AA0A 3PF1A 4FOZA 4LSHA 2CWQA 2KDYA 2XE5A 3O0EA 4FZNA 1S5LO 4FZMA 4PR7A 5DL5A 5T5FA 3VE2A 3POXA 4AKRB 6PRNA 3KZIO 4AYID 3A2SX 1GFPA 4G76A 2WJQA 4LSIA 4U9CA 2KXPB 4GCSA 4AYMC 1ZHWA 5DL8A 4CTDA 5GTHO 3C1LA 3DA3A 2W80C 2GMYA 3G7GA 4FUVA 5PRNA 3SYBA 3WI4A 4C4VA 2R4PA 2YNKA 3HOLA 3HWBA 2ODJA 2Y0LA 3KVDD 2JN8A 1YS5A 3LK3B 3POQA 3FYXA 4GF4A 1MPFA 2Y7SA 3TZGA 4F4BA 5B66O 1ME5A 2PFXA 3AA1B 3POUA 2R89A 2N2LA 2R88A 2XTQA 3V8UA 5IYUA 2IWVA 3HOEA 2ZLDA 1MM4A 5DIPA 3D7IA 4N75A 4AYEC 7PRNA 8PRNA 5D5DA 2WJRA 3BEYA 1GFMA 1ZHTA 2K4TA 1Q9FA 2N2MA 4UB6O 4KRAA 2FGRA
chains in the Genus database with same CATH topology
1E54A 4D5UA 3GP6A 1IZNB 3PORA 2O4DA 2GE4A 1HXTA 2X27X 4GHBA 4B61A 2KXPA 1MM5A 2M07A 2M06A 4RJXA 4O4XA 2PRNA 1QJ8A 3VE1A 1VKEA 2XE2A 4O4UA 3VZTX 3EMNX 1PHOA 4C69X 4RL9A 5GV0A 4FZLA 1P8CA 4FRTA 4O3ZA 3UPGA 2MHLA 2OUWA 3AAAB 2AF7A 2XTRA 1IZNA 2OMFA 4GCPA 4JCHA 1P4TA 3AA0B 1ZHXA 4N59A 4AZLA 1HXXA 1GFQA 1HXUA 4RLCA 3T0SA 3WI5A 2F1TA 3VZWX 3DA4A 3T24A 5AFUK 1G90A 5G26A 1THQA 1ZHYA 4RJWA 4FSPA 3SYSA 2LFUA 2Y0HA 2J1NA 4KR8A 4AYDC 5DIKA 4AYNA 5AFUL 1PRNA 2XMXA 2YPVA 1LW1A 1GFNA 2ZFGA 3AAAA 3C5OA 2LHFA 5DL7A 3SZVA 2OYOA 4PUXA 2K0LA 2Y2XA 3HW9A 3LK2B 3LK3A 2J4UP 2ERVA 1BT9A 4FESA 1GU9A 4O3YA 4XNLA 4AUIA 4KR4A 4GCQA 4FT6A 1OPFA 1ZHZA 1Q9GA 3LK41 1GFOA 4G9QA 3PRNA 3PQSA 4D65A 2KZ7A 2F1VA 2XG6A 2QTKA 4FRXA 3VY8X 3AA7B 3AA1A 4O3XB 4E1TA 3PQUA 3SY9A 5ADXL 4D64A 3AA6B 4BUMX 3RBHA 3K19A 5ADXK 2KZ7B 4LSFA 2O4VA 3AAEB 4AFKA 2PORA 3AA7A 3VY9X 2JMMA 3LVYA 2KC0A 2XE1A 1OSMA 2MNHA 5DL6A 3T20A 4AKMA 3UAQA 1KNCA 4XNKA 3QRCA 4AKRA 2Y0KA 2Q0TA 5EE2A 4N58A 4QQ1A 3UU2A 2XE3A 1QJ9A 3LK42 4O3WA 4Z3TA 3AA6A 2IJCA 3LK2A 2QEUA 5FVNA 2ES9A 4FSOA 1BH3A 4E1SA 1QJPA 3NSGA 4RLBA 3AAEA 3SZDA 5JDPA 4LSEA 4G75A 3SY7A 3JTYA 1BXWA 2FGQX 4O49A 4FMSA 4JFBA 2PRRA 2W81C 1ORMA 1H6S1 3AA0A 4FOZA 4LSHA 2CWQA 2KDYA 2XE5A 3O0EA 4FZNA 4FZMA 5DL5A 5T5FA 3VE2A 3VZUX 4AKRB 3POXA 6PRNA 4AYID 3A2SX 1GFPA 4G76A 4LSIA 4U9CA 2KXPB 4GCSA 4AYMC 1ZHWA 5DL8A 3C1LA 3DA3A 2W80C 2GMYA 3G7GA 4FUVA 5PRNA 3SYBA 3WI4A 2YNKA 3HOLA 3QRAA 3HWBA 2ODJA 2Y0LA 3KVDD 2JN8A 1YS5A 3LK3B 3POQA 3FYXA 4GF4A 1MPFA 2Y7SA 3TZGA 4F4BA 1ME5A 2PFXA 3AA1B 3POUA 2XTQA 2N2LA 3V8UA 5IYUA 3HOEA 2ZLDA 1MM4A 5DIPA 3D7IA 4AYEC 7PRNA 8PRNA 5D5DA 3BEYA 1GFMA 1ZHTA 2K4TA 1Q9FA 2N2MA 4KRAA 2FGRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KZ7 B;  3AAE B;  1IZN B;  4AKR B;  3AA7 A;  5AFU L;  2KXP A;  3AAA A;  2KXP B;  3LK2 B;  3LK3 A;  4AKR A;  3LK4 2;  3LK3 B;  3AA6 A;  3LK2 A;  3LK4 1;  3AAA B;  3AA1 B;  1IZN A;  3AAE A;  2KZ7 A;  3AA0 B;  3AA7 B;  3AA1 A;  5ADX L;  5AFU K;  3AA6 B;  3AA0 A;  5ADX K; 
#chains in the Genus database with same CATH topology
 1E54 A;  3A0H O;  3GP6 A;  4D5U A;  4C4V B;  1IZN B;  2WVP A;  3POR A;  2O4D A;  2GE4 A;  1HXT A;  2X27 X;  3PGU A;  2R8A A;  4GHB A;  2KXP A;  1MM5 A;  4B61 A;  4C00 A;  2M07 A;  2M06 A;  4RJX A;  4O4X A;  2PRN A;  1QJ8 A;  3VE1 A;  1VKE A;  2XE2 A;  4O4U A;  1T1L A;  3VZT X;  3EMN X;  1PHO A;  5G39 A;  4C69 X;  4RL9 A;  4PJ0 O;  3JCU O;  5GV0 A;  4FZL A;  1P8C A;  4FRT A;  4O3Z A;  3UPG A;  2MHL A;  2OUW A;  2JQY A;  2AF7 A;  2XTR A;  1IZN A;  2OMF A;  3AAA B;  3PGR A;  2X9K A;  4GCP A;  2R4N A;  4JCH A;  1P4T A;  4UB8 O;  5TIS O;  3AA0 B;  1ZHX A;  4N59 A;  4AZL A;  1HXX A;  1GFQ A;  1HXU A;  4RLC A;  3T0S A;  3WI5 A;  2F1T A;  3VZW X;  3DA4 A;  3T24 A;  5AFU K;  4E1S A;  1G90 A;  5G26 A;  1THQ A;  1ZHY A;  4RJW A;  4FSP A;  3SYS A;  2LFU A;  2Y0H A;  2J1N A;  4KR8 A;  4AYD C;  5DIK A;  4AYN A;  5G3A A;  1PRN A;  2XMX A;  2YPV A;  1LW1 A;  1GFN A;  5KAF O;  5AFU L;  2R4L A;  2ZFG A;  3AAA A;  3C5O A;  2LHF A;  5DL7 A;  3BS0 A;  2OYO A;  4PUX A;  2K0L A;  2Y2X A;  3A0B O;  3HW9 A;  3LK2 B;  3SZV A;  3LK3 A;  2J4U P;  2ERV A;  1BT9 A;  4FES A;  1GU9 A;  4O3Y A;  4XNL A;  3VZU X;  4AUI A;  4KR4 A;  2R4O A;  4FT6 A;  4GCQ A;  1OPF A;  1ZHZ A;  1Q9G A;  3LK4 1;  1GFO A;  4G9Q A;  3PRN A;  3PQS A;  4D65 A;  2KZ7 A;  2F1V A;  2XG6 A;  4IL6 O;  2QTK A;  4FRX A;  3VY8 X;  3AA7 B;  3AA1 A;  4O3X B;  4E1T A;  2IWW A;  3PQU A;  3SY9 A;  5ADX L;  4D64 A;  3AA6 B;  4BUM X;  3DZM A;  3RBH A;  3K19 A;  5ADX K;  4N74 A;  2KZ7 B;  4LSF A;  2O4V A;  3AAE B;  4AFK A;  2POR A;  3AA7 A;  5H2F O;  3VY9 X;  2JMM A;  3BRY A;  3LVY A;  2KC0 A;  2XE1 A;  4K3C A;  3WU2 O;  1OSM A;  2MNH A;  5DL6 A;  3DWO X;  5E79 O;  3T20 A;  1T16 A;  4AKM A;  3DWN A;  3UAQ A;  1KNC A;  4K3B A;  3QRC A;  4XNK A;  4AKR A;  2Y0K A;  2Q0T A;  5EE2 A;  4N58 A;  4QQ1 A;  3UU2 A;  5G38 A;  2XE3 A;  1QJ9 A;  3LK4 2;  4FQE A;  4O3W A;  5GTI O;  4Z3T A;  3AA6 A;  2IJC A;  3LK2 A;  2QEU A;  5FVN A;  2ES9 A;  4FSO A;  1BH3 A;  3NJT A;  1QJP A;  3NSG A;  4RLB A;  3AAE A;  3BRZ A;  3QRA A;  5KAI O;  3SZD A;  4LSE A;  5B5E O;  3PGS A;  4G75 A;  5JDP A;  3SY7 A;  3JTY A;  1BXW A;  2FGQ X;  4O49 A;  2AXT O;  2F1C X;  4FMS A;  4JFB A;  2PRR A;  2W81 C;  1ORM A;  1H6S 1;  3AA0 A;  3PF1 A;  4FOZ A;  4LSH A;  2CWQ A;  2KDY A;  2XE5 A;  3O0E A;  4FZN A;  1S5L O;  4FZM A;  4PR7 A;  5DL5 A;  5T5F A;  3VE2 A;  3POX A;  4AKR B;  6PRN A;  3KZI O;  4AYI D;  3A2S X;  1GFP A;  4G76 A;  2WJQ A;  4LSI A;  4U9C A;  2KXP B;  4GCS A;  4AYM C;  1ZHW A;  5DL8 A;  4CTD A;  5GTH O;  3C1L A;  3DA3 A;  2W80 C;  2GMY A;  3G7G A;  4FUV A;  5PRN A;  3SYB A;  3WI4 A;  4C4V A;  2R4P A;  2YNK A;  3HOL A;  3HWB A;  2ODJ A;  2Y0L A;  3KVD D;  2JN8 A;  1YS5 A;  3LK3 B;  3POQ A;  3FYX A;  4GF4 A;  1MPF A;  2Y7S A;  3TZG A;  4F4B A;  5B66 O;  1ME5 A;  2PFX A;  3AA1 B;  3POU A;  2R89 A;  2N2L A;  2R88 A;  2XTQ A;  3V8U A;  5IYU A;  2IWV A;  3HOE A;  2ZLD A;  1MM4 A;  5DIP A;  3D7I A;  4N75 A;  4AYE C;  7PRN A;  8PRN A;  5D5D A;  2WJR A;  3BEY A;  1GFM A;  1ZHT A;  2K4T A;  1Q9F A;  2N2M A;  4UB6 O;  4KRA A;  2FGR A; 
#chains in the Genus database with same CATH homology
 1E54 A;  4D5U A;  3GP6 A;  1IZN B;  3POR A;  2O4D A;  2GE4 A;  1HXT A;  2X27 X;  4GHB A;  4B61 A;  2KXP A;  1MM5 A;  2M07 A;  2M06 A;  4RJX A;  4O4X A;  2PRN A;  1QJ8 A;  3VE1 A;  1VKE A;  2XE2 A;  4O4U A;  3VZT X;  3EMN X;  1PHO A;  4C69 X;  4RL9 A;  5GV0 A;  4FZL A;  1P8C A;  4FRT A;  4O3Z A;  3UPG A;  2MHL A;  2OUW A;  3AAA B;  2AF7 A;  2XTR A;  1IZN A;  2OMF A;  4GCP A;  4JCH A;  1P4T A;  3AA0 B;  1ZHX A;  4N59 A;  4AZL A;  1HXX A;  1GFQ A;  1HXU A;  4RLC A;  3T0S A;  3WI5 A;  2F1T A;  3VZW X;  3DA4 A;  3T24 A;  5AFU K;  1G90 A;  5G26 A;  1THQ A;  1ZHY A;  4RJW A;  4FSP A;  3SYS A;  2LFU A;  2Y0H A;  2J1N A;  4KR8 A;  4AYD C;  5DIK A;  4AYN A;  5AFU L;  1PRN A;  2XMX A;  2YPV A;  1LW1 A;  1GFN A;  2ZFG A;  3AAA A;  3C5O A;  2LHF A;  5DL7 A;  3SZV A;  2OYO A;  4PUX A;  2K0L A;  2Y2X A;  3HW9 A;  3LK2 B;  3LK3 A;  2J4U P;  2ERV A;  1BT9 A;  4FES A;  1GU9 A;  4O3Y A;  4XNL A;  4AUI A;  4KR4 A;  4GCQ A;  4FT6 A;  1OPF A;  1ZHZ A;  1Q9G A;  3LK4 1;  1GFO A;  4G9Q A;  3PRN A;  3PQS A;  4D65 A;  2KZ7 A;  2F1V A;  2XG6 A;  2QTK A;  4FRX A;  3VY8 X;  3AA7 B;  3AA1 A;  4O3X B;  4E1T A;  3PQU A;  3SY9 A;  5ADX L;  4D64 A;  3AA6 B;  4BUM X;  3RBH A;  3K19 A;  5ADX K;  2KZ7 B;  4LSF A;  2O4V A;  3AAE B;  4AFK A;  2POR A;  3AA7 A;  3VY9 X;  2JMM A;  3LVY A;  2KC0 A;  2XE1 A;  1OSM A;  2MNH A;  5DL6 A;  3T20 A;  4AKM A;  3UAQ A;  1KNC A;  4XNK A;  3QRC A;  4AKR A;  2Y0K A;  2Q0T A;  5EE2 A;  4N58 A;  4QQ1 A;  3UU2 A;  2XE3 A;  1QJ9 A;  3LK4 2;  4O3W A;  4Z3T A;  3AA6 A;  2IJC A;  3LK2 A;  2QEU A;  5FVN A;  2ES9 A;  4FSO A;  1BH3 A;  4E1S A;  1QJP A;  3NSG A;  4RLB A;  3AAE A;  3SZD A;  5JDP A;  4LSE A;  4G75 A;  3SY7 A;  3JTY A;  1BXW A;  2FGQ X;  4O49 A;  4FMS A;  4JFB A;  2PRR A;  2W81 C;  1ORM A;  1H6S 1;  3AA0 A;  4FOZ A;  4LSH A;  2CWQ A;  2KDY A;  2XE5 A;  3O0E A;  4FZN A;  4FZM A;  5DL5 A;  5T5F A;  3VE2 A;  3VZU X;  4AKR B;  3POX A;  6PRN A;  4AYI D;  3A2S X;  1GFP A;  4G76 A;  4LSI A;  4U9C A;  2KXP B;  4GCS A;  4AYM C;  1ZHW A;  5DL8 A;  3C1L A;  3DA3 A;  2W80 C;  2GMY A;  3G7G A;  4FUV A;  5PRN A;  3SYB A;  3WI4 A;  2YNK A;  3HOL A;  3QRA A;  3HWB A;  2ODJ A;  2Y0L A;  3KVD D;  2JN8 A;  1YS5 A;  3LK3 B;  3POQ A;  3FYX A;  4GF4 A;  1MPF A;  2Y7S A;  3TZG A;  4F4B A;  1ME5 A;  2PFX A;  3AA1 B;  3POU A;  2XTQ A;  2N2L A;  3V8U A;  5IYU A;  3HOE A;  2ZLD A;  1MM4 A;  5DIP A;  3D7I A;  4AYE C;  7PRN A;  8PRN A;  5D5D A;  3BEY A;  1GFM A;  1ZHT A;  2K4T A;  1Q9F A;  2N2M A;  4KRA A;  2FGR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...