3AAAA

Crystal structure of actin capping protein in complex with v-1
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
267
structure length
267
Chain Sequence
SDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
molecule keywords F-actin-capping protein subunit alpha-1
molecule tags Protein binding
source organism Gallus gallus
total genus 75
structure length 267
sequence length 267
ec nomenclature
pdb deposition date 2009-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaaA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaaA02
3LK2B 2KZ7A 2KXPA 2KZ7B 5ADXL 2KXPB 3AAAB 3AA1A 3AA0A 3LK41 3AA1B 5AFUK 3AA7A 3AA0B 3AA6A 3AA7B 5ADXK 3AA6B 3AAEA 3AAEB 3LK3A 4AKRA 1IZNA 3AAAA 3LK2A 5AFUL 3LK3B 3LK42 4AKRB 1IZNB
chains in the Genus database with same CATH superfamily
2IWWA 2R4LA 1GU9A 3T20A 3POQA 4FSPA 2F1CX 2M07A 1ORMA 2WJRA 3SY7A 1IZNA 1GFPA 3BEYA 4O49A 2KXPB 1HXXA 4E1SA 2XTRA 2ZLDA 1ZHWA 2MHLA 1MM5A 5JDPA 3GP6A 4N58A 3BRYA 4KR8A 4PUXA 1HXUA 2N2MA 1T16A 1MPFA 1BH3A 3KVDD 2KDYA 2R89A 4RLBA 1GFOA 4RJXA 2N2LA 4FESA 5DL7A 4B61A 5GTHO 4O3WA 1MM4A 1LW1A 2Y0KA 3T24A 4G76A 4KRAA 4K3CA 3DWOX 4FZNA 2IJCA 3VZUX 4FUVA 4D65A 5DL5A 5PRNA 4F4BA 1YS5A 3A2SX 5GV0A 3LVYA 4AYMC 2Y0LA 4AUIA 3JTYA 1G90A 4UB6O 6PRNA 2MNHA 5G38A 5G3AA 2JN8A 2JQYA 4O3XB 2KXPA 3UPGA 2WVPA 3K19A 4RJWA 4O4XA 3PGSA 4GHBA 4AZLA 5G39A 1P4TA 2W81C 3C1LA 4N59A 2O4DA 2OUWA 3V8UA 3VE1A 4G75A 2PRRA 3HOEA 3G7GA 4C69X 2LHFA 5E79O 5KAFO 3QRCA 4RL9A 3WI5A 3T0SA 1ZHXA 2OMFA 3PORA 4AKRB 3LK2B 4FSOA 3TZGA 2XE1A 2ERVA 1T1LA 4JFBA 4FOZA 2XE3A 3POUA 5FVNA 5D5DA 5GTIO 4Z3TA 1ZHZA 4FRTA 1S5LO 5T5FA 2K0LA 3EMNX 3O0EA 4JCHA 5DIKA 2J4UP 3PQUA 4RLCA 1P8CA 2AF7A 2LFUA 5ADXL 4C00A 1THQA 2YPVA 2R4NA 3UAQA 3PGRA 3UU2A 3WI4A 2R8AA 1Q9FA 4XNLA 1GFQA 1PRNA 4K3BA 1QJ9A 2F1VA 3PRNA 4FZLA 4FRXA 8PRNA 4AKMA 3AA0A 3RBHA 5B5EO 3NJTA 3AA6A 3AA7B 1Q9GA 1ZHYA 1VKEA 3DA4A 2XE2A 3AAEB 2R4PA 4AKRA 3POXA 3LK2A 3C5OA 4E1TA 2ZFGA 1OSMA 2R88A 4D64A 2IWVA 2CWQA 5B66O 4FMSA 3AA1A 3BRZA 3PQSA 4O4UA 3LK41 4LSIA 4AYDC 3FYXA 1BT9A 2GE4A 5DIPA 2O4VA 5AFUL 2XTQA 4LSFA 3AAAB 1E54A 5DL6A 2M06A 4G9QA 4FQEA 3KZIO 1QJ8A 5H2FO 2ODJA 2X9KA 3DA3A 3AA0B 3VY8X 2ES9A 3VZTX 3AA6B 3SY9A 3HWBA 2R4OA 3D7IA 4O3YA 4XNKA 3LK3B 3DWNA 2J1NA 4AYNA 3SZVA 2W80C 4CTDA 2QTKA 4C4VB 3AA1B 2KC0A 3AA7A 2K4TA 3DZMA 5ADXK 3AAEA 3BS0A 1BXWA 4AYEC 3SYBA 4LSEA 2KZ7B 4QQ1A 3A0BO 1PHOA 4GF4A 4PR7A 3JCUO 3PGUA 2Y2XA 5G26A 5KAIO 1H6S1 2YNKA 4FT6A 3AAAA 4GCSA 4PJ0O 3PF1A 4N74A 2F1TA 2PFXA 3SYSA 2AXTO 4D5UA 3HW9A 3NSGA 2XG6A 2XE5A 1QJPA 2Q0TA 2QEUA 2JMMA 4LSHA 1KNCA 3LK3A 1GFNA 5TISO 3LK42 1IZNB 4IL6O 4AYID 3HOLA 1HXTA 4GCQA 2OYOA 4BUMX 4O3ZA 4C4VA 3SZDA 4UB8O 5AFUK 2WJQA 7PRNA 2X27X 4FZMA 3VE2A 3QRAA 1OPFA 2GMYA 1ZHTA 1GFMA 2PORA 4KR4A 2KZ7A 5EE2A 2Y7SA 4N75A 4AFKA 4U9CA 1ME5A 2FGRA 5DL8A 3VZWX 4GCPA 2PRNA 2XMXA 3A0HO 2Y0HA 2FGQX 3WU2O 5IYUA 3VY9X
chains in the Genus database with same CATH topology
4XNLA 4LSEA 1GFQA 1PRNA 4O3XB 2KXPA 2KZ7B 3UPGA 1QJ9A 4QQ1A 2F1VA 1GU9A 1PHOA 3PRNA 4FZLA 4GF4A 4FRXA 3T20A 8PRNA 3K19A 3POQA 4AKMA 3AA0A 4FSPA 3RBHA 4RJWA 3AA6A 4O4XA 3AA7B 1Q9GA 1ZHYA 2Y2XA 5G26A 1VKEA 3DA4A 4GHBA 4AZLA 1H6S1 2M07A 2XE2A 3AAEB 1ORMA 2YNKA 1P4TA 4AKRA 1IZNA 3AAAA 1GFPA 3LK2A 2W81C 3C5OA 3POXA 3BEYA 4FT6A 4GCSA 4E1TA 4O49A 3C1LA 2F1TA 2ZFGA 2O4DA 1OSMA 4N59A 4D64A 2OUWA 2PFXA 2KXPB 3V8UA 1HXXA 4E1SA 2XTRA 2ZLDA 1ZHWA 4G75A 3SYSA 3VE1A 2CWQA 4FMSA 3AA1A 3PQSA 4D5UA 2PRRA 4O4UA 3LK41 4LSIA 3HW9A 3NSGA 2MHLA 2XG6A 4AYDC 1MM5A 5JDPA 3FYXA 3GP6A 3HOEA 2XE5A 1QJPA 2Q0TA 4N58A 3G7GA 2LHFA 4KR8A 4PUXA 4C69X 2QEUA 1BT9A 1HXUA 2N2MA 2JMMA 4LSHA 1MPFA 3QRCA 1BH3A 1KNCA 2GE4A 3KVDD 2KDYA 4RL9A 3LK3A 5DIPA 3WI5A 4RLBA 1GFNA 1GFOA 1ZHXA 2O4VA 2OMFA 3PORA 2XTQA 3LK42 1IZNB 2N2LA 3AAAB 3LK2B 4FSOA 4LSFA 1E54A 4RJXA 3TZGA 4FESA 5DL6A 4AYID 5DL7A 4B61A 2XE1A 2M06A 3HOLA 4G9QA 1HXTA 2ERVA 1QJ8A 2OYOA 4GCQA 4O3ZA 2ODJA 3DA3A 4JFBA 4BUMX 4FOZA 2XE3A 3SZDA 4O3WA 1MM4A 5AFUK 3POUA 1LW1A 3AA0B 5FVNA 5D5DA 4AKRB 4Z3TA 3VY8X 2ES9A 5AFUL 7PRNA 1ZHZA 2Y0KA 3VZTX 3T24A 2X27X 3AA6B 3SY9A 3HWBA 4FZMA 4G76A 3VE2A 4FRTA 4KRAA 3T0SA 3QRAA 5T5FA 1OPFA 2K0LA 3EMNX 2GMYA 3O0EA 3D7IA 4JCHA 5DIKA 1ZHTA 1GFMA 2J4UP 4O3YA 2PORA 3PQUA 3LK3B 1P8CA 4KR4A 2J1NA 4RLCA 4XNKA 2KZ7A 4AYNA 2AF7A 3SZVA 2W80C 5EE2A 2Y7SA 4FZNA 2QTKA 2IJCA 3VZUX 2LFUA 5ADXL 4FUVA 4AFKA 4D65A 5DL5A 4U9CA 5PRNA 4F4BA 1YS5A 1THQA 3A2SX 5GV0A 2YPVA 1ME5A 2FGRA 3LVYA 2KC0A 3AA1B 5DL8A 3VZWX 4AYMC 4GCPA 3AA7A 2PRNA 2K4TA 2Y0LA 2XMXA 2Y0HA 2FGQX 5ADXK 4AUIA 3JTYA 1G90A 3UAQA 6PRNA 3AAEA 3UU2A 3WI4A 2MNHA 1BXWA 4AYEC 5IYUA 3SYBA 3VY9X 2JN8A 1Q9FA 3SY7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK2 B;  2KZ7 A;  2KXP A;  2KZ7 B;  5ADX L;  2KXP B;  3AAA B;  3AA1 A;  3AA0 A;  3LK4 1;  3AA1 B;  5AFU K;  3AA7 A;  3AA0 B;  3AA6 A;  3AA7 B;  5ADX K;  3AA6 B;  3AAE A;  3AAE B;  3LK3 A;  4AKR A;  1IZN A;  3AAA A;  3LK2 A;  5AFU L;  3LK3 B;  3LK4 2;  4AKR B;  1IZN B; 
#chains in the Genus database with same CATH topology
 2IWW A;  2R4L A;  1GU9 A;  3T20 A;  3POQ A;  4FSP A;  2F1C X;  2M07 A;  1ORM A;  2WJR A;  3SY7 A;  1IZN A;  1GFP A;  3BEY A;  4O49 A;  2KXP B;  1HXX A;  4E1S A;  2XTR A;  2ZLD A;  1ZHW A;  2MHL A;  1MM5 A;  5JDP A;  3GP6 A;  4N58 A;  3BRY A;  4KR8 A;  4PUX A;  1HXU A;  2N2M A;  1T16 A;  1MPF A;  1BH3 A;  3KVD D;  2KDY A;  2R89 A;  4RLB A;  1GFO A;  4RJX A;  2N2L A;  4FES A;  5DL7 A;  4B61 A;  5GTH O;  4O3W A;  1MM4 A;  1LW1 A;  2Y0K A;  3T24 A;  4G76 A;  4KRA A;  4K3C A;  3DWO X;  4FZN A;  2IJC A;  3VZU X;  4FUV A;  4D65 A;  5DL5 A;  5PRN A;  4F4B A;  1YS5 A;  3A2S X;  5GV0 A;  3LVY A;  4AYM C;  2Y0L A;  4AUI A;  3JTY A;  1G90 A;  4UB6 O;  6PRN A;  2MNH A;  5G38 A;  5G3A A;  2JN8 A;  2JQY A;  4O3X B;  2KXP A;  3UPG A;  2WVP A;  3K19 A;  4RJW A;  4O4X A;  3PGS A;  4GHB A;  4AZL A;  5G39 A;  1P4T A;  2W81 C;  3C1L A;  4N59 A;  2O4D A;  2OUW A;  3V8U A;  3VE1 A;  4G75 A;  2PRR A;  3HOE A;  3G7G A;  4C69 X;  2LHF A;  5E79 O;  5KAF O;  3QRC A;  4RL9 A;  3WI5 A;  3T0S A;  1ZHX A;  2OMF A;  3POR A;  4AKR B;  3LK2 B;  4FSO A;  3TZG A;  2XE1 A;  2ERV A;  1T1L A;  4JFB A;  4FOZ A;  2XE3 A;  3POU A;  5FVN A;  5D5D A;  5GTI O;  4Z3T A;  1ZHZ A;  4FRT A;  1S5L O;  5T5F A;  2K0L A;  3EMN X;  3O0E A;  4JCH A;  5DIK A;  2J4U P;  3PQU A;  4RLC A;  1P8C A;  2AF7 A;  2LFU A;  5ADX L;  4C00 A;  1THQ A;  2YPV A;  2R4N A;  3UAQ A;  3PGR A;  3UU2 A;  3WI4 A;  2R8A A;  1Q9F A;  4XNL A;  1GFQ A;  1PRN A;  4K3B A;  1QJ9 A;  2F1V A;  3PRN A;  4FZL A;  4FRX A;  8PRN A;  4AKM A;  3AA0 A;  3RBH A;  5B5E O;  3NJT A;  3AA6 A;  3AA7 B;  1Q9G A;  1ZHY A;  1VKE A;  3DA4 A;  2XE2 A;  3AAE B;  2R4P A;  4AKR A;  3POX A;  3LK2 A;  3C5O A;  4E1T A;  2ZFG A;  1OSM A;  2R88 A;  4D64 A;  2IWV A;  2CWQ A;  5B66 O;  4FMS A;  3AA1 A;  3BRZ A;  3PQS A;  4O4U A;  3LK4 1;  4LSI A;  4AYD C;  3FYX A;  1BT9 A;  2GE4 A;  5DIP A;  2O4V A;  5AFU L;  2XTQ A;  4LSF A;  3AAA B;  1E54 A;  5DL6 A;  2M06 A;  4G9Q A;  4FQE A;  3KZI O;  1QJ8 A;  5H2F O;  2ODJ A;  2X9K A;  3DA3 A;  3AA0 B;  3VY8 X;  2ES9 A;  3VZT X;  3AA6 B;  3SY9 A;  3HWB A;  2R4O A;  3D7I A;  4O3Y A;  4XNK A;  3LK3 B;  3DWN A;  2J1N A;  4AYN A;  3SZV A;  2W80 C;  4CTD A;  2QTK A;  4C4V B;  3AA1 B;  2KC0 A;  3AA7 A;  2K4T A;  3DZM A;  5ADX K;  3AAE A;  3BS0 A;  1BXW A;  4AYE C;  3SYB A;  4LSE A;  2KZ7 B;  4QQ1 A;  3A0B O;  1PHO A;  4GF4 A;  4PR7 A;  3JCU O;  3PGU A;  2Y2X A;  5G26 A;  5KAI O;  1H6S 1;  2YNK A;  4FT6 A;  3AAA A;  4GCS A;  4PJ0 O;  3PF1 A;  4N74 A;  2F1T A;  2PFX A;  3SYS A;  2AXT O;  4D5U A;  3HW9 A;  3NSG A;  2XG6 A;  2XE5 A;  1QJP A;  2Q0T A;  2QEU A;  2JMM A;  4LSH A;  1KNC A;  3LK3 A;  1GFN A;  5TIS O;  3LK4 2;  1IZN B;  4IL6 O;  4AYI D;  3HOL A;  1HXT A;  4GCQ A;  2OYO A;  4BUM X;  4O3Z A;  4C4V A;  3SZD A;  4UB8 O;  5AFU K;  2WJQ A;  7PRN A;  2X27 X;  4FZM A;  3VE2 A;  3QRA A;  1OPF A;  2GMY A;  1ZHT A;  1GFM A;  2POR A;  4KR4 A;  2KZ7 A;  5EE2 A;  2Y7S A;  4N75 A;  4AFK A;  4U9C A;  1ME5 A;  2FGR A;  5DL8 A;  3VZW X;  4GCP A;  2PRN A;  2XMX A;  3A0H O;  2Y0H A;  2FGQ X;  3WU2 O;  5IYU A;  3VY9 X; 
#chains in the Genus database with same CATH homology
 4XNL A;  4LSE A;  1GFQ A;  1PRN A;  4O3X B;  2KXP A;  2KZ7 B;  3UPG A;  1QJ9 A;  4QQ1 A;  2F1V A;  1GU9 A;  1PHO A;  3PRN A;  4FZL A;  4GF4 A;  4FRX A;  3T20 A;  8PRN A;  3K19 A;  3POQ A;  4AKM A;  3AA0 A;  4FSP A;  3RBH A;  4RJW A;  3AA6 A;  4O4X A;  3AA7 B;  1Q9G A;  1ZHY A;  2Y2X A;  5G26 A;  1VKE A;  3DA4 A;  4GHB A;  4AZL A;  1H6S 1;  2M07 A;  2XE2 A;  3AAE B;  1ORM A;  2YNK A;  1P4T A;  4AKR A;  1IZN A;  3AAA A;  1GFP A;  3LK2 A;  2W81 C;  3C5O A;  3POX A;  3BEY A;  4FT6 A;  4GCS A;  4E1T A;  4O49 A;  3C1L A;  2F1T A;  2ZFG A;  2O4D A;  1OSM A;  4N59 A;  4D64 A;  2OUW A;  2PFX A;  2KXP B;  3V8U A;  1HXX A;  4E1S A;  2XTR A;  2ZLD A;  1ZHW A;  4G75 A;  3SYS A;  3VE1 A;  2CWQ A;  4FMS A;  3AA1 A;  3PQS A;  4D5U A;  2PRR A;  4O4U A;  3LK4 1;  4LSI A;  3HW9 A;  3NSG A;  2MHL A;  2XG6 A;  4AYD C;  1MM5 A;  5JDP A;  3FYX A;  3GP6 A;  3HOE A;  2XE5 A;  1QJP A;  2Q0T A;  4N58 A;  3G7G A;  2LHF A;  4KR8 A;  4PUX A;  4C69 X;  2QEU A;  1BT9 A;  1HXU A;  2N2M A;  2JMM A;  4LSH A;  1MPF A;  3QRC A;  1BH3 A;  1KNC A;  2GE4 A;  3KVD D;  2KDY A;  4RL9 A;  3LK3 A;  5DIP A;  3WI5 A;  4RLB A;  1GFN A;  1GFO A;  1ZHX A;  2O4V A;  2OMF A;  3POR A;  2XTQ A;  3LK4 2;  1IZN B;  2N2L A;  3AAA B;  3LK2 B;  4FSO A;  4LSF A;  1E54 A;  4RJX A;  3TZG A;  4FES A;  5DL6 A;  4AYI D;  5DL7 A;  4B61 A;  2XE1 A;  2M06 A;  3HOL A;  4G9Q A;  1HXT A;  2ERV A;  1QJ8 A;  2OYO A;  4GCQ A;  4O3Z A;  2ODJ A;  3DA3 A;  4JFB A;  4BUM X;  4FOZ A;  2XE3 A;  3SZD A;  4O3W A;  1MM4 A;  5AFU K;  3POU A;  1LW1 A;  3AA0 B;  5FVN A;  5D5D A;  4AKR B;  4Z3T A;  3VY8 X;  2ES9 A;  5AFU L;  7PRN A;  1ZHZ A;  2Y0K A;  3VZT X;  3T24 A;  2X27 X;  3AA6 B;  3SY9 A;  3HWB A;  4FZM A;  4G76 A;  3VE2 A;  4FRT A;  4KRA A;  3T0S A;  3QRA A;  5T5F A;  1OPF A;  2K0L A;  3EMN X;  2GMY A;  3O0E A;  3D7I A;  4JCH A;  5DIK A;  1ZHT A;  1GFM A;  2J4U P;  4O3Y A;  2POR A;  3PQU A;  3LK3 B;  1P8C A;  4KR4 A;  2J1N A;  4RLC A;  4XNK A;  2KZ7 A;  4AYN A;  2AF7 A;  3SZV A;  2W80 C;  5EE2 A;  2Y7S A;  4FZN A;  2QTK A;  2IJC A;  3VZU X;  2LFU A;  5ADX L;  4FUV A;  4AFK A;  4D65 A;  5DL5 A;  4U9C A;  5PRN A;  4F4B A;  1YS5 A;  1THQ A;  3A2S X;  5GV0 A;  2YPV A;  1ME5 A;  2FGR A;  3LVY A;  2KC0 A;  3AA1 B;  5DL8 A;  3VZW X;  4AYM C;  4GCP A;  3AA7 A;  2PRN A;  2K4T A;  2Y0L A;  2XMX A;  2Y0H A;  2FGQ X;  5ADX K;  4AUI A;  3JTY A;  1G90 A;  3UAQ A;  6PRN A;  3AAE A;  3UU2 A;  3WI4 A;  2MNH A;  1BXW A;  4AYE C;  5IYU A;  3SYB A;  3VY9 X;  2JN8 A;  1Q9F A;  3SY7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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