3AAAA

Crystal structure of actin capping protein in complex with v-1
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
267
structure length
267
Chain Sequence
SDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
total genus 75
structure length 267
sequence length 267
ec nomenclature
pdb deposition date 2009-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaaA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaaA02
3AAAA 5AFUL 3LK2B 3AA6A 4AKRB 1IZNA 5ADXL 3LK3B 3AA7A 3AA1B 2KXPB 2KZ7B 3AA0A 3AAEA 3AAAB 5AFUK 3AA6B 3LK2A 3LK42 1IZNB 4AKRA 5ADXK 3LK41 3AA1A 3LK3A 2KZ7A 3AA7B 2KXPA 3AA0B 3AAEB
chains in the Genus database with same CATH superfamily
3HW9A 2IJCA 2PORA 4C00A 5B5EO 4UB6O 4LSEA 3LK3B 4GHBA 3VE2A 3UAQA 1GFMA 3HOEA 5AFUK 3EMNX 5G39A 3O0EA 1IZNB 3LK41 4FRTA 4G75A 3LK3A 3AAEB 3POQA 4FRXA 1T16A 4RL9A 1IZNA 2JQYA 3WI4A 5IYUA 2W80C 2KZ7B 3KVDD 3AA0A 3UPGA 4PR7A 3AAAB 2JMMA 1QJPA 2ZFGA 2FGRA 3POXA 2QEUA 5FVNA 4JCHA 3A0HO 2MHLA 3V8UA 1LW1A 1Q9FA 4PUXA 2Y0KA 3BRYA 4O4UA 3SYSA 2OYOA 2AF7A 3AA7B 2Y7SA 3SZVA 4QQ1A 1T1LA 4O3YA 4O3XB 1GFQA 3PRNA 4FMSA 2R8AA 2Y0LA 3SY9A 4F4BA 2M06A 3KZIO 4O4XA 4K3CA 3DZMA 2PRNA 3WU2O 2ERVA 4AKMA 3LK2B 4E1SA 1Q9GA 3BEYA 5KAIO 2PFXA 1GFNA 5B66O 3C5OA 3T20A 2OUWA 1P8CA 4FUVA 3LK2A 2N2MA 5EE2A 2PRRA 4G76A 3PF1A 1HXUA 5DL8A 1ME5A 3K19A 5DL7A 2MNHA 4K3BA 4KR4A 2AXTO 3HOLA 2KDYA 3UU2A 4XNLA 2J4UP 4FZNA 3QRAA 4XNKA 5PRNA 3AA6B 1BT9A 3TZGA 2J1NA 2YNKA 3AA0B 3QRCA 2O4DA 3VZUX 4RLBA 3NSGA 1OPFA 3AA6A 1P4TA 5TISO 3POUA 5T5FA 2X27X 1MPFA 2R4NA 4FT6A 4O49A 2Y2XA 3PQSA 3RBHA 4AYEC 1QJ9A 2F1CX 3T0SA 4N75A 4FESA 2ODJA 2XE2A 3VE1A 4C69X 3VY8X 3VY9X 3JTYA 4E1TA 4N58A 3PORA 4CTDA 2K4TA 4N74A 3A0BO 1KNCA 2LFUA 3PGRA 3D7IA 1ZHZA 4UB8O 4RLCA 3G7GA 5H2FO 3DWOX 4FOZA 2XE5A 2XMXA 8PRNA 3LK42 4G9QA 2X9KA 4AYNA 4GCPA 5DL5A 3VZTX 6PRNA 4PJ0O 2F1TA 4B61A 5DL6A 1ZHYA 4LSFA 3HWBA 4C4VA 3PQUA 1GFPA 1HXTA 5KAFO 5DIPA 2KC0A 1THQA 1PHOA 5GV0A 3VZWX 3DWNA 3NJTA 1MM4A 5GTIO 5G26A 4LSIA 4GCQA 2YPVA 3DA3A 3SZDA 1S5LO 2R89A 3T24A 4GCSA 4AKRA 4FQEA 1BXWA 3A2SX 2WJQA 3AA1A 3BS0A 2GE4A 4O3ZA 5GTHO 5AFUL 4FSOA 7PRNA 1G90A 5ADXL 1GFOA 3PGSA 1BH3A 3SYBA 2Q0TA 1GU9A 1OSMA 1YS5A 3BRZA 2JN8A 2R4LA 5ADXK 4BUMX 3FYXA 2ES9A 4KRAA 5DIKA 4D5UA 2XE1A 2K0LA 1HXXA 2CWQA 2R88A 3JCUO 4LSHA 3AAEA 3WI5A 4U9CA 2FGQX 2LHFA 1ZHWA 3DA4A 4GF4A 2KZ7A 1QJ8A 2Y0HA 1MM5A 2IWVA 3AAAA 2XG6A 2QTKA 4AZLA 3LVYA 4AYDC 4IL6O 2OMFA 2R4OA 2ZLDA 1E54A 2GMYA 4AYID 2M07A 4AUIA 5D5DA 2F1VA 4KR8A 1PRNA 4C4VB 4JFBA 4RJWA 4AFKA 1ZHTA 5G3AA 3PGUA 4FZMA 4O3WA 4FZLA 3AA7A 2WJRA 4N59A 4D65A 1ORMA 2XTRA 2XE3A 2O4VA 3GP6A 2W81C 1VKEA 1H6S1 4Z3TA 5G38A 2XTQA 2R4PA 4D64A 4AKRB 3C1LA 3AA1B 2KXPB 4AYMC 5E79O 2WVPA 5JDPA 1ZHXA 4RJXA 2N2LA 3SY7A 4FSPA 2IWWA 2KXPA
chains in the Genus database with same CATH topology
4KRAA 3HW9A 5DIKA 4D5UA 2IJCA 2PORA 2XE1A 2ERVA 4AKMA 3LK2B 4E1SA 3D7IA 1ZHZA 1Q9GA 2K0LA 1HXXA 3BEYA 2PFXA 1GFNA 4LSEA 3LK3B 4RLCA 2CWQA 3C5OA 4GHBA 3G7GA 3VE2A 4LSHA 3AAEA 3UAQA 3T20A 1GFMA 3WI5A 4FOZA 3HOEA 4U9CA 5AFUK 2XE5A 2OUWA 2FGQX 2XMXA 1P8CA 3EMNX 8PRNA 4FUVA 3LK2A 2N2MA 1IZNB 2LHFA 3LK42 3O0EA 2PRRA 4G76A 1ZHWA 5EE2A 4G9QA 3LK41 4FRTA 4G75A 1HXUA 3DA4A 4GF4A 4AYNA 5DL8A 4GCPA 3LK3A 2KZ7A 1QJ8A 5DL5A 2Y0HA 1ME5A 3VZTX 3AAEB 1MM5A 2XG6A 3AAAA 3K19A 5DL7A 2QTKA 6PRNA 3POQA 4AZLA 4FRXA 2MNHA 3LVYA 4RL9A 4AYDC 4KR4A 2F1TA 4B61A 5DL6A 1IZNA 2OMFA 3WI4A 5IYUA 3HOLA 2KDYA 1ZHYA 2W80C 4LSFA 3UU2A 2KZ7B 3KVDD 2ZLDA 3AA0A 1E54A 2GMYA 3HWBA 4FZNA 4XNLA 2J4UP 3UPGA 3AAAB 3QRAA 3PQUA 4XNKA 5PRNA 4AYID 2JMMA 3AA6B 1GFPA 2M07A 4AUIA 1BT9A 5D5DA 1QJPA 3TZGA 2ZFGA 2F1VA 4KR8A 1HXTA 1PRNA 2J1NA 2YNKA 5DIPA 2KC0A 1THQA 2FGRA 3AA0B 3QRCA 4JFBA 2O4DA 3VZUX 4RLBA 4RJWA 3NSGA 1PHOA 5GV0A 4AFKA 1OPFA 3POXA 1ZHTA 2QEUA 3VZWX 3AA6A 1P4TA 3POUA 1MM4A 4FZMA 5FVNA 4O3WA 4JCHA 4LSIA 5G26A 4GCQA 2MHLA 2YPVA 4FZLA 5T5FA 1LW1A 3V8UA 3AA7A 2X27X 3DA3A 3SZDA 1Q9FA 4PUXA 2Y0KA 4N59A 1MPFA 4D65A 3T24A 4FT6A 1ORMA 4GCSA 2XTRA 4O4UA 4O49A 2Y2XA 3PQSA 3SYSA 3RBHA 2OYOA 4AYEC 4AKRA 2XE3A 1QJ9A 1BXWA 3A2SX 2AF7A 2O4VA 3GP6A 3T0SA 3AA1A 3AA7B 2GE4A 2W81C 4FESA 2Y7SA 4O3ZA 3SZVA 1VKEA 2ODJA 2XE2A 4QQ1A 3VE1A 5AFUL 4C69X 4FSOA 3VY8X 1H6S1 3FYXA 4Z3TA 2XTQA 4O3YA 4O3XB 1GFQA 3PRNA 4AKRB 4D64A 3C1LA 7PRNA 1G90A 3VY9X 5ADXL 3JTYA 4E1TA 1GFOA 4N58A 3AA1B 2KXPB 3PORA 2K4TA 1BH3A 4FMSA 4AYMC 3SYBA 2Y0LA 2Q0TA 5JDPA 1ZHXA 1GU9A 1OSMA 1YS5A 2M06A 3SY9A 4F4BA 2JN8A 4RJXA 4O4XA 5ADXK 4BUMX 2N2LA 1KNCA 3SY7A 2LFUA 4FSPA 2PRNA 2KXPA 2ES9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA A;  5AFU L;  3LK2 B;  3AA6 A;  4AKR B;  1IZN A;  5ADX L;  3LK3 B;  3AA7 A;  3AA1 B;  2KXP B;  2KZ7 B;  3AA0 A;  3AAE A;  3AAA B;  5AFU K;  3AA6 B;  3LK2 A;  3LK4 2;  1IZN B;  4AKR A;  5ADX K;  3LK4 1;  3AA1 A;  3LK3 A;  2KZ7 A;  3AA7 B;  2KXP A;  3AA0 B;  3AAE B; 
#chains in the Genus database with same CATH topology
 3HW9 A;  2IJC A;  2POR A;  4C00 A;  5B5E O;  4UB6 O;  4LSE A;  3LK3 B;  4GHB A;  3VE2 A;  3UAQ A;  1GFM A;  3HOE A;  5AFU K;  3EMN X;  5G39 A;  3O0E A;  1IZN B;  3LK4 1;  4FRT A;  4G75 A;  3LK3 A;  3AAE B;  3POQ A;  4FRX A;  1T16 A;  4RL9 A;  1IZN A;  2JQY A;  3WI4 A;  5IYU A;  2W80 C;  2KZ7 B;  3KVD D;  3AA0 A;  3UPG A;  4PR7 A;  3AAA B;  2JMM A;  1QJP A;  2ZFG A;  2FGR A;  3POX A;  2QEU A;  5FVN A;  4JCH A;  3A0H O;  2MHL A;  3V8U A;  1LW1 A;  1Q9F A;  4PUX A;  2Y0K A;  3BRY A;  4O4U A;  3SYS A;  2OYO A;  2AF7 A;  3AA7 B;  2Y7S A;  3SZV A;  4QQ1 A;  1T1L A;  4O3Y A;  4O3X B;  1GFQ A;  3PRN A;  4FMS A;  2R8A A;  2Y0L A;  3SY9 A;  4F4B A;  2M06 A;  3KZI O;  4O4X A;  4K3C A;  3DZM A;  2PRN A;  3WU2 O;  2ERV A;  4AKM A;  3LK2 B;  4E1S A;  1Q9G A;  3BEY A;  5KAI O;  2PFX A;  1GFN A;  5B66 O;  3C5O A;  3T20 A;  2OUW A;  1P8C A;  4FUV A;  3LK2 A;  2N2M A;  5EE2 A;  2PRR A;  4G76 A;  3PF1 A;  1HXU A;  5DL8 A;  1ME5 A;  3K19 A;  5DL7 A;  2MNH A;  4K3B A;  4KR4 A;  2AXT O;  3HOL A;  2KDY A;  3UU2 A;  4XNL A;  2J4U P;  4FZN A;  3QRA A;  4XNK A;  5PRN A;  3AA6 B;  1BT9 A;  3TZG A;  2J1N A;  2YNK A;  3AA0 B;  3QRC A;  2O4D A;  3VZU X;  4RLB A;  3NSG A;  1OPF A;  3AA6 A;  1P4T A;  5TIS O;  3POU A;  5T5F A;  2X27 X;  1MPF A;  2R4N A;  4FT6 A;  4O49 A;  2Y2X A;  3PQS A;  3RBH A;  4AYE C;  1QJ9 A;  2F1C X;  3T0S A;  4N75 A;  4FES A;  2ODJ A;  2XE2 A;  3VE1 A;  4C69 X;  3VY8 X;  3VY9 X;  3JTY A;  4E1T A;  4N58 A;  3POR A;  4CTD A;  2K4T A;  4N74 A;  3A0B O;  1KNC A;  2LFU A;  3PGR A;  3D7I A;  1ZHZ A;  4UB8 O;  4RLC A;  3G7G A;  5H2F O;  3DWO X;  4FOZ A;  2XE5 A;  2XMX A;  8PRN A;  3LK4 2;  4G9Q A;  2X9K A;  4AYN A;  4GCP A;  5DL5 A;  3VZT X;  6PRN A;  4PJ0 O;  2F1T A;  4B61 A;  5DL6 A;  1ZHY A;  4LSF A;  3HWB A;  4C4V A;  3PQU A;  1GFP A;  1HXT A;  5KAF O;  5DIP A;  2KC0 A;  1THQ A;  1PHO A;  5GV0 A;  3VZW X;  3DWN A;  3NJT A;  1MM4 A;  5GTI O;  5G26 A;  4LSI A;  4GCQ A;  2YPV A;  3DA3 A;  3SZD A;  1S5L O;  2R89 A;  3T24 A;  4GCS A;  4AKR A;  4FQE A;  1BXW A;  3A2S X;  2WJQ A;  3AA1 A;  3BS0 A;  2GE4 A;  4O3Z A;  5GTH O;  5AFU L;  4FSO A;  7PRN A;  1G90 A;  5ADX L;  1GFO A;  3PGS A;  1BH3 A;  3SYB A;  2Q0T A;  1GU9 A;  1OSM A;  1YS5 A;  3BRZ A;  2JN8 A;  2R4L A;  5ADX K;  4BUM X;  3FYX A;  2ES9 A;  4KRA A;  5DIK A;  4D5U A;  2XE1 A;  2K0L A;  1HXX A;  2CWQ A;  2R88 A;  3JCU O;  4LSH A;  3AAE A;  3WI5 A;  4U9C A;  2FGQ X;  2LHF A;  1ZHW A;  3DA4 A;  4GF4 A;  2KZ7 A;  1QJ8 A;  2Y0H A;  1MM5 A;  2IWV A;  3AAA A;  2XG6 A;  2QTK A;  4AZL A;  3LVY A;  4AYD C;  4IL6 O;  2OMF A;  2R4O A;  2ZLD A;  1E54 A;  2GMY A;  4AYI D;  2M07 A;  4AUI A;  5D5D A;  2F1V A;  4KR8 A;  1PRN A;  4C4V B;  4JFB A;  4RJW A;  4AFK A;  1ZHT A;  5G3A A;  3PGU A;  4FZM A;  4O3W A;  4FZL A;  3AA7 A;  2WJR A;  4N59 A;  4D65 A;  1ORM A;  2XTR A;  2XE3 A;  2O4V A;  3GP6 A;  2W81 C;  1VKE A;  1H6S 1;  4Z3T A;  5G38 A;  2XTQ A;  2R4P A;  4D64 A;  4AKR B;  3C1L A;  3AA1 B;  2KXP B;  4AYM C;  5E79 O;  2WVP A;  5JDP A;  1ZHX A;  4RJX A;  2N2L A;  3SY7 A;  4FSP A;  2IWW A;  2KXP A; 
#chains in the Genus database with same CATH homology
 4KRA A;  3HW9 A;  5DIK A;  4D5U A;  2IJC A;  2POR A;  2XE1 A;  2ERV A;  4AKM A;  3LK2 B;  4E1S A;  3D7I A;  1ZHZ A;  1Q9G A;  2K0L A;  1HXX A;  3BEY A;  2PFX A;  1GFN A;  4LSE A;  3LK3 B;  4RLC A;  2CWQ A;  3C5O A;  4GHB A;  3G7G A;  3VE2 A;  4LSH A;  3AAE A;  3UAQ A;  3T20 A;  1GFM A;  3WI5 A;  4FOZ A;  3HOE A;  4U9C A;  5AFU K;  2XE5 A;  2OUW A;  2FGQ X;  2XMX A;  1P8C A;  3EMN X;  8PRN A;  4FUV A;  3LK2 A;  2N2M A;  1IZN B;  2LHF A;  3LK4 2;  3O0E A;  2PRR A;  4G76 A;  1ZHW A;  5EE2 A;  4G9Q A;  3LK4 1;  4FRT A;  4G75 A;  1HXU A;  3DA4 A;  4GF4 A;  4AYN A;  5DL8 A;  4GCP A;  3LK3 A;  2KZ7 A;  1QJ8 A;  5DL5 A;  2Y0H A;  1ME5 A;  3VZT X;  3AAE B;  1MM5 A;  2XG6 A;  3AAA A;  3K19 A;  5DL7 A;  2QTK A;  6PRN A;  3POQ A;  4AZL A;  4FRX A;  2MNH A;  3LVY A;  4RL9 A;  4AYD C;  4KR4 A;  2F1T A;  4B61 A;  5DL6 A;  1IZN A;  2OMF A;  3WI4 A;  5IYU A;  3HOL A;  2KDY A;  1ZHY A;  2W80 C;  4LSF A;  3UU2 A;  2KZ7 B;  3KVD D;  2ZLD A;  3AA0 A;  1E54 A;  2GMY A;  3HWB A;  4FZN A;  4XNL A;  2J4U P;  3UPG A;  3AAA B;  3QRA A;  3PQU A;  4XNK A;  5PRN A;  4AYI D;  2JMM A;  3AA6 B;  1GFP A;  2M07 A;  4AUI A;  1BT9 A;  5D5D A;  1QJP A;  3TZG A;  2ZFG A;  2F1V A;  4KR8 A;  1HXT A;  1PRN A;  2J1N A;  2YNK A;  5DIP A;  2KC0 A;  1THQ A;  2FGR A;  3AA0 B;  3QRC A;  4JFB A;  2O4D A;  3VZU X;  4RLB A;  4RJW A;  3NSG A;  1PHO A;  5GV0 A;  4AFK A;  1OPF A;  3POX A;  1ZHT A;  2QEU A;  3VZW X;  3AA6 A;  1P4T A;  3POU A;  1MM4 A;  4FZM A;  5FVN A;  4O3W A;  4JCH A;  4LSI A;  5G26 A;  4GCQ A;  2MHL A;  2YPV A;  4FZL A;  5T5F A;  1LW1 A;  3V8U A;  3AA7 A;  2X27 X;  3DA3 A;  3SZD A;  1Q9F A;  4PUX A;  2Y0K A;  4N59 A;  1MPF A;  4D65 A;  3T24 A;  4FT6 A;  1ORM A;  4GCS A;  2XTR A;  4O4U A;  4O49 A;  2Y2X A;  3PQS A;  3SYS A;  3RBH A;  2OYO A;  4AYE C;  4AKR A;  2XE3 A;  1QJ9 A;  1BXW A;  3A2S X;  2AF7 A;  2O4V A;  3GP6 A;  3T0S A;  3AA1 A;  3AA7 B;  2GE4 A;  2W81 C;  4FES A;  2Y7S A;  4O3Z A;  3SZV A;  1VKE A;  2ODJ A;  2XE2 A;  4QQ1 A;  3VE1 A;  5AFU L;  4C69 X;  4FSO A;  3VY8 X;  1H6S 1;  3FYX A;  4Z3T A;  2XTQ A;  4O3Y A;  4O3X B;  1GFQ A;  3PRN A;  4AKR B;  4D64 A;  3C1L A;  7PRN A;  1G90 A;  3VY9 X;  5ADX L;  3JTY A;  4E1T A;  1GFO A;  4N58 A;  3AA1 B;  2KXP B;  3POR A;  2K4T A;  1BH3 A;  4FMS A;  4AYM C;  3SYB A;  2Y0L A;  2Q0T A;  5JDP A;  1ZHX A;  1GU9 A;  1OSM A;  1YS5 A;  2M06 A;  3SY9 A;  4F4B A;  2JN8 A;  4RJX A;  4O4X A;  5ADX K;  4BUM X;  2N2L A;  1KNC A;  3SY7 A;  2LFU A;  4FSP A;  2PRN A;  2KXP A;  2ES9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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