3AAAA

Crystal structure of actin capping protein in complex with v-1
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
267
structure length
267
Chain Sequence
SDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
total genus 75
structure length 267
sequence length 267
ec nomenclature
pdb deposition date 2009-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaaA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaaA02
3AAAA 1IZNA 3LK2B 3AAEB 2KZ7B 4AKRA 3AA7B 3LK3A 5AFUK 3AA6B 3AA1A 3LK41 3LK42 3AAAB 1IZNB 2KXPA 5ADXK 3LK3B 3AA0A 4AKRB 3AA1B 5AFUL 2KXPB 3LK2A 2KZ7A 3AAEA 3AA0B 5ADXL 3AA7A 3AA6A
chains in the Genus database with same CATH superfamily
4RL9A 2XMXA 2ODJA 6PRNA 3BRZA 3WI4A 3HOEA 3LK3B 4AKRB 5E79O 3KZIO 4E1TA 5B66O 2F1TA 3PQSA 3C5OA 2IWVA 2F1CX 4UB8O 2WJQA 2XE2A 5AFUL 4KR4A 2R89A 3V8UA 1BT9A 5FVNA 4AZLA 3QRAA 3A0BO 2YPVA 3VE1A 4QQ1A 4G75A 3QRCA 4GHBA 2J1NA 5G38A 3WU2O 4FRXA 4GF4A 2ZLDA 4CTDA 2N2LA 1GFPA 4XNLA 4GCPA 1IZNA 4PUXA 2WJRA 1P4TA 5IYUA 2OYOA 4FZLA 3PQUA 4KRAA 2GE4A 2XE1A 5T5FA 2KXPA 4F4BA 2QTKA 1T16A 3A2SX 2Q0TA 3LK2A 2ES9A 1QJ8A 4N75A 3VZTX 3PGUA 2O4DA 2KDYA 5GTIO 2Y0KA 2IJCA 5D5DA 3AA7B 3LK3A 3T20A 5GTHO 1IZNB 3DZMA 3AA0A 4KR8A 2R4LA 5GV0A 1ME5A 4AKMA 1GU9A 3SY7A 2J4UP 1ORMA 3LK2B 3UU2A 3PRNA 2LFUA 4RJWA 3PGSA 1VKEA 3VY8X 2W80C 5ADXK 3C1LA 1ZHWA 4LSIA 1QJ9A 5DL6A 2PORA 3AA0B 1ZHYA 4Z3TA 3NJTA 3UAQA 3POQA 3DA3A 4LSEA 4N74A 4O3WA 4JCHA 2M06A 4O49A 2PFXA 1Q9GA 3VE2A 1OPFA 3T0SA 4C4VB 4U9CA 3JCUO 4O3ZA 4GCSA 4O4UA 5TISO 4RLBA 4AYEC 2O4VA 2LHFA 2F1VA 3VY9X 4FSPA 5DL7A 4AYNA 5DIKA 5DL8A 1P8CA 4K3CA 5DIPA 4N59A 3BRYA 1GFMA 2R4OA 3GP6A 3A0HO 4C69X 3AA7A 2R4NA 3PORA 3AAEB 2WVPA 2M07A 5G26A 3FYXA 1GFQA 1BXWA 3POUA 5G3AA 5KAIO 2FGRA 2XTRA 4FMSA 2MHLA 4G9QA 4RJXA 1E54A 3SYBA 4E1SA 4FRTA 3JTYA 4G76A 3RBHA 4FQEA 1KNCA 1OSMA 3NSGA 4FZNA 3PF1A 4O3XB 3PGRA 3K19A 2JQYA 4AYID 2R8AA 3BEYA 5KAFO 2FGQX 3AAAA 1S5LO 2Y7SA 3SYSA 2W81C 4C4VA 4B61A 2X9KA 3HWBA 4AYMC 4AFKA 2XE3A 4K3BA 3SZVA 1MPFA 1QJPA 2KC0A 2R4PA 2JN8A 2KZ7A 5H2FO 2JMMA 3POXA 4UB6O 3KVDD 2XTQA 3AA6B 2X27X 3AAAB 2Y2XA 3UPGA 1YS5A 4O4XA 4PR7A 3WI5A 4FESA 3T24A 4LSFA 4N58A 1Q9FA 5DL5A 3DWNA 2N2MA 3AAEA 1ZHTA 2K0LA 1GFNA 3G7GA 4JFBA 4IL6O 2KZ7B 5PRNA 2CWQA 4FUVA 3AA1A 2AF7A 2K4TA 3DA4A 1MM5A 4AUIA 8PRNA 4C00A 3SZDA 4FOZA 5EE2A 4FT6A 5ADXL 1T1LA 5JDPA 2AXTO 2PRNA 4D5UA 2YNKA 4BUMX 5B5EO 3DWOX 1THQA 1PRNA 3LK42 3LK41 4FZMA 3O0EA 2QEUA 1ZHZA 4GCQA 1HXTA 3AA1B 3TZGA 2MNHA 3VZWX 1HXUA 5G39A 1H6S1 7PRNA 1PHOA 3HOLA 2PRRA 3SY9A 4LSHA 2XE5A 4AYDC 4RLCA 3HW9A 1ZHXA 4O3YA 1MM4A 3EMNX 4D64A 1GFOA 2XG6A 1BH3A 2Y0HA 2IWWA 3D7IA 1HXXA 2OMFA 3AA6A 2GMYA 2ZFGA 3BS0A 4D65A 3VZUX 2ERVA 4AKRA 1G90A 5AFUK 4FSOA 4XNKA 2OUWA 3LVYA 2KXPB 2Y0LA 2R88A 4PJ0O 1LW1A
chains in the Genus database with same CATH topology
2KDYA 4RL9A 3PORA 3AAEB 4JFBA 2XMXA 2Y0KA 2IJCA 2KZ7B 2M07A 5PRNA 2CWQA 4FUVA 5D5DA 5G26A 2ODJA 3AA7B 3LK3A 3FYXA 6PRNA 3AA1A 3T20A 3WI4A 1GFQA 3HOEA 1IZNB 1BXWA 2AF7A 3POUA 2K4TA 3DA4A 1MM5A 4AUIA 2FGRA 3LK3B 3AA0A 4AKRB 4KR8A 5GV0A 4E1TA 2XTRA 8PRNA 4FMSA 3SZDA 4FOZA 5EE2A 2MHLA 1ME5A 2F1TA 4AKMA 4G9QA 1GU9A 3PQSA 4FT6A 3SY7A 5ADXL 4RJXA 1E54A 2J4UP 3SYBA 4E1SA 1ORMA 5JDPA 3C5OA 4FRTA 3LK2B 3JTYA 2PRNA 4D5UA 4G76A 3RBHA 2YNKA 4BUMX 1KNCA 3UU2A 1THQA 1PRNA 1OSMA 3LK42 3LK41 3NSGA 3PRNA 4FZNA 4FZMA 2LFUA 3O0EA 4RJWA 4O3XB 1VKEA 2QEUA 3VY8X 2W80C 1ZHZA 4GCQA 5ADXK 1HXTA 2XE2A 3C1LA 3AA1B 4KR4A 5AFUL 3K19A 3TZGA 1ZHWA 2MNHA 3VZWX 1HXUA 4LSIA 1QJ9A 5DL6A 2PORA 4AYID 3V8UA 1BT9A 5FVNA 3AA0B 1H6S1 1ZHYA 7PRNA 4Z3TA 3BEYA 4AZLA 3UAQA 3POQA 2FGQX 3DA3A 3AAAA 1PHOA 2Y7SA 3QRAA 4LSEA 3HOLA 4O3WA 4JCHA 3SYSA 2PRRA 2M06A 2W81C 4LSHA 4O49A 2PFXA 1Q9GA 3SY9A 4B61A 2XE5A 4AYDC 2YPVA 3HWBA 4RLCA 3VE2A 3VE1A 3HW9A 1ZHXA 4AYMC 4O3YA 1OPFA 3T0SA 4QQ1A 1MM4A 4AFKA 4G75A 3QRCA 3EMNX 4U9CA 4GHBA 4D64A 2XE3A 4O3ZA 1GFOA 2J1NA 4GCSA 4O4UA 2XG6A 1BH3A 3SZVA 2Y0HA 1MPFA 1QJPA 4RLBA 2KC0A 4AYEC 2O4VA 4FRXA 4GF4A 2ZLDA 2JN8A 3D7IA 2KZ7A 2F1VA 2LHFA 1HXXA 3VY9X 4FSPA 2OMFA 2JMMA 5DL7A 4AYNA 2N2LA 1GFPA 3AA6A 2GMYA 4XNLA 4GCPA 1IZNA 2ZFGA 3POXA 4PUXA 4D65A 3VZUX 5IYUA 1P4TA 2ERVA 2OYOA 5DIKA 4FZLA 3PQUA 5DL8A 1P8CA 4KRAA 4AKRA 1G90A 3KVDD 2XTQA 2GE4A 5AFUK 3AA6B 4FSOA 2X27X 2XE1A 3AAAB 2Y2XA 5DIPA 2KXPA 5T5FA 3UPGA 4XNKA 2OUWA 4F4BA 1YS5A 2QTKA 4O4XA 4N59A 3WI5A 4FESA 3LVYA 3T24A 3A2SX 2Q0TA 2KXPB 2Y0LA 4LSFA 4N58A 1Q9FA 5DL5A 3LK2A 1GFMA 3GP6A 2N2MA 4C69X 2ES9A 3AAEA 1QJ8A 1ZHTA 3VZTX 1LW1A 2K0LA 1GFNA 2O4DA 3G7GA 3AA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AAA A;  1IZN A;  3LK2 B;  3AAE B;  2KZ7 B;  4AKR A;  3AA7 B;  3LK3 A;  5AFU K;  3AA6 B;  3AA1 A;  3LK4 1;  3LK4 2;  3AAA B;  1IZN B;  2KXP A;  5ADX K;  3LK3 B;  3AA0 A;  4AKR B;  3AA1 B;  5AFU L;  2KXP B;  3LK2 A;  2KZ7 A;  3AAE A;  3AA0 B;  5ADX L;  3AA7 A;  3AA6 A; 
#chains in the Genus database with same CATH topology
 4RL9 A;  2XMX A;  2ODJ A;  6PRN A;  3BRZ A;  3WI4 A;  3HOE A;  3LK3 B;  4AKR B;  5E79 O;  3KZI O;  4E1T A;  5B66 O;  2F1T A;  3PQS A;  3C5O A;  2IWV A;  2F1C X;  4UB8 O;  2WJQ A;  2XE2 A;  5AFU L;  4KR4 A;  2R89 A;  3V8U A;  1BT9 A;  5FVN A;  4AZL A;  3QRA A;  3A0B O;  2YPV A;  3VE1 A;  4QQ1 A;  4G75 A;  3QRC A;  4GHB A;  2J1N A;  5G38 A;  3WU2 O;  4FRX A;  4GF4 A;  2ZLD A;  4CTD A;  2N2L A;  1GFP A;  4XNL A;  4GCP A;  1IZN A;  4PUX A;  2WJR A;  1P4T A;  5IYU A;  2OYO A;  4FZL A;  3PQU A;  4KRA A;  2GE4 A;  2XE1 A;  5T5F A;  2KXP A;  4F4B A;  2QTK A;  1T16 A;  3A2S X;  2Q0T A;  3LK2 A;  2ES9 A;  1QJ8 A;  4N75 A;  3VZT X;  3PGU A;  2O4D A;  2KDY A;  5GTI O;  2Y0K A;  2IJC A;  5D5D A;  3AA7 B;  3LK3 A;  3T20 A;  5GTH O;  1IZN B;  3DZM A;  3AA0 A;  4KR8 A;  2R4L A;  5GV0 A;  1ME5 A;  4AKM A;  1GU9 A;  3SY7 A;  2J4U P;  1ORM A;  3LK2 B;  3UU2 A;  3PRN A;  2LFU A;  4RJW A;  3PGS A;  1VKE A;  3VY8 X;  2W80 C;  5ADX K;  3C1L A;  1ZHW A;  4LSI A;  1QJ9 A;  5DL6 A;  2POR A;  3AA0 B;  1ZHY A;  4Z3T A;  3NJT A;  3UAQ A;  3POQ A;  3DA3 A;  4LSE A;  4N74 A;  4O3W A;  4JCH A;  2M06 A;  4O49 A;  2PFX A;  1Q9G A;  3VE2 A;  1OPF A;  3T0S A;  4C4V B;  4U9C A;  3JCU O;  4O3Z A;  4GCS A;  4O4U A;  5TIS O;  4RLB A;  4AYE C;  2O4V A;  2LHF A;  2F1V A;  3VY9 X;  4FSP A;  5DL7 A;  4AYN A;  5DIK A;  5DL8 A;  1P8C A;  4K3C A;  5DIP A;  4N59 A;  3BRY A;  1GFM A;  2R4O A;  3GP6 A;  3A0H O;  4C69 X;  3AA7 A;  2R4N A;  3POR A;  3AAE B;  2WVP A;  2M07 A;  5G26 A;  3FYX A;  1GFQ A;  1BXW A;  3POU A;  5G3A A;  5KAI O;  2FGR A;  2XTR A;  4FMS A;  2MHL A;  4G9Q A;  4RJX A;  1E54 A;  3SYB A;  4E1S A;  4FRT A;  3JTY A;  4G76 A;  3RBH A;  4FQE A;  1KNC A;  1OSM A;  3NSG A;  4FZN A;  3PF1 A;  4O3X B;  3PGR A;  3K19 A;  2JQY A;  4AYI D;  2R8A A;  3BEY A;  5KAF O;  2FGQ X;  3AAA A;  1S5L O;  2Y7S A;  3SYS A;  2W81 C;  4C4V A;  4B61 A;  2X9K A;  3HWB A;  4AYM C;  4AFK A;  2XE3 A;  4K3B A;  3SZV A;  1MPF A;  1QJP A;  2KC0 A;  2R4P A;  2JN8 A;  2KZ7 A;  5H2F O;  2JMM A;  3POX A;  4UB6 O;  3KVD D;  2XTQ A;  3AA6 B;  2X27 X;  3AAA B;  2Y2X A;  3UPG A;  1YS5 A;  4O4X A;  4PR7 A;  3WI5 A;  4FES A;  3T24 A;  4LSF A;  4N58 A;  1Q9F A;  5DL5 A;  3DWN A;  2N2M A;  3AAE A;  1ZHT A;  2K0L A;  1GFN A;  3G7G A;  4JFB A;  4IL6 O;  2KZ7 B;  5PRN A;  2CWQ A;  4FUV A;  3AA1 A;  2AF7 A;  2K4T A;  3DA4 A;  1MM5 A;  4AUI A;  8PRN A;  4C00 A;  3SZD A;  4FOZ A;  5EE2 A;  4FT6 A;  5ADX L;  1T1L A;  5JDP A;  2AXT O;  2PRN A;  4D5U A;  2YNK A;  4BUM X;  5B5E O;  3DWO X;  1THQ A;  1PRN A;  3LK4 2;  3LK4 1;  4FZM A;  3O0E A;  2QEU A;  1ZHZ A;  4GCQ A;  1HXT A;  3AA1 B;  3TZG A;  2MNH A;  3VZW X;  1HXU A;  5G39 A;  1H6S 1;  7PRN A;  1PHO A;  3HOL A;  2PRR A;  3SY9 A;  4LSH A;  2XE5 A;  4AYD C;  4RLC A;  3HW9 A;  1ZHX A;  4O3Y A;  1MM4 A;  3EMN X;  4D64 A;  1GFO A;  2XG6 A;  1BH3 A;  2Y0H A;  2IWW A;  3D7I A;  1HXX A;  2OMF A;  3AA6 A;  2GMY A;  2ZFG A;  3BS0 A;  4D65 A;  3VZU X;  2ERV A;  4AKR A;  1G90 A;  5AFU K;  4FSO A;  4XNK A;  2OUW A;  3LVY A;  2KXP B;  2Y0L A;  2R88 A;  4PJ0 O;  1LW1 A; 
#chains in the Genus database with same CATH homology
 2KDY A;  4RL9 A;  3POR A;  3AAE B;  4JFB A;  2XMX A;  2Y0K A;  2IJC A;  2KZ7 B;  2M07 A;  5PRN A;  2CWQ A;  4FUV A;  5D5D A;  5G26 A;  2ODJ A;  3AA7 B;  3LK3 A;  3FYX A;  6PRN A;  3AA1 A;  3T20 A;  3WI4 A;  1GFQ A;  3HOE A;  1IZN B;  1BXW A;  2AF7 A;  3POU A;  2K4T A;  3DA4 A;  1MM5 A;  4AUI A;  2FGR A;  3LK3 B;  3AA0 A;  4AKR B;  4KR8 A;  5GV0 A;  4E1T A;  2XTR A;  8PRN A;  4FMS A;  3SZD A;  4FOZ A;  5EE2 A;  2MHL A;  1ME5 A;  2F1T A;  4AKM A;  4G9Q A;  1GU9 A;  3PQS A;  4FT6 A;  3SY7 A;  5ADX L;  4RJX A;  1E54 A;  2J4U P;  3SYB A;  4E1S A;  1ORM A;  5JDP A;  3C5O A;  4FRT A;  3LK2 B;  3JTY A;  2PRN A;  4D5U A;  4G76 A;  3RBH A;  2YNK A;  4BUM X;  1KNC A;  3UU2 A;  1THQ A;  1PRN A;  1OSM A;  3LK4 2;  3LK4 1;  3NSG A;  3PRN A;  4FZN A;  4FZM A;  2LFU A;  3O0E A;  4RJW A;  4O3X B;  1VKE A;  2QEU A;  3VY8 X;  2W80 C;  1ZHZ A;  4GCQ A;  5ADX K;  1HXT A;  2XE2 A;  3C1L A;  3AA1 B;  4KR4 A;  5AFU L;  3K19 A;  3TZG A;  1ZHW A;  2MNH A;  3VZW X;  1HXU A;  4LSI A;  1QJ9 A;  5DL6 A;  2POR A;  4AYI D;  3V8U A;  1BT9 A;  5FVN A;  3AA0 B;  1H6S 1;  1ZHY A;  7PRN A;  4Z3T A;  3BEY A;  4AZL A;  3UAQ A;  3POQ A;  2FGQ X;  3DA3 A;  3AAA A;  1PHO A;  2Y7S A;  3QRA A;  4LSE A;  3HOL A;  4O3W A;  4JCH A;  3SYS A;  2PRR A;  2M06 A;  2W81 C;  4LSH A;  4O49 A;  2PFX A;  1Q9G A;  3SY9 A;  4B61 A;  2XE5 A;  4AYD C;  2YPV A;  3HWB A;  4RLC A;  3VE2 A;  3VE1 A;  3HW9 A;  1ZHX A;  4AYM C;  4O3Y A;  1OPF A;  3T0S A;  4QQ1 A;  1MM4 A;  4AFK A;  4G75 A;  3QRC A;  3EMN X;  4U9C A;  4GHB A;  4D64 A;  2XE3 A;  4O3Z A;  1GFO A;  2J1N A;  4GCS A;  4O4U A;  2XG6 A;  1BH3 A;  3SZV A;  2Y0H A;  1MPF A;  1QJP A;  4RLB A;  2KC0 A;  4AYE C;  2O4V A;  4FRX A;  4GF4 A;  2ZLD A;  2JN8 A;  3D7I A;  2KZ7 A;  2F1V A;  2LHF A;  1HXX A;  3VY9 X;  4FSP A;  2OMF A;  2JMM A;  5DL7 A;  4AYN A;  2N2L A;  1GFP A;  3AA6 A;  2GMY A;  4XNL A;  4GCP A;  1IZN A;  2ZFG A;  3POX A;  4PUX A;  4D65 A;  3VZU X;  5IYU A;  1P4T A;  2ERV A;  2OYO A;  5DIK A;  4FZL A;  3PQU A;  5DL8 A;  1P8C A;  4KRA A;  4AKR A;  1G90 A;  3KVD D;  2XTQ A;  2GE4 A;  5AFU K;  3AA6 B;  4FSO A;  2X27 X;  2XE1 A;  3AAA B;  2Y2X A;  5DIP A;  2KXP A;  5T5F A;  3UPG A;  4XNK A;  2OUW A;  4F4B A;  1YS5 A;  2QTK A;  4O4X A;  4N59 A;  3WI5 A;  4FES A;  3LVY A;  3T24 A;  3A2S X;  2Q0T A;  2KXP B;  2Y0L A;  4LSF A;  4N58 A;  1Q9F A;  5DL5 A;  3LK2 A;  1GFM A;  3GP6 A;  2N2M A;  4C69 X;  2ES9 A;  3AAE A;  1QJ8 A;  1ZHT A;  3VZT X;  1LW1 A;  2K0L A;  1GFN A;  2O4D A;  3G7G A;  3AA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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