3AAAA

Crystal structure of actin capping protein in complex with v-1
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
267
structure length
267
Chain Sequence
SDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition
pubmed doi rcsb
source organism Gallus gallus
molecule tags Protein binding
molecule keywords F-actin-capping protein subunit alpha-1
total genus 75
structure length 267
sequence length 267
ec nomenclature
pdb deposition date 2009-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01267 F-actin_cap_A F-actin capping protein alpha subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.20 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 3aaaA01
2.40.160.80 Mainly Beta Beta Barrel Porin Porin 3aaaA02
3LK2A 3AA7B 1IZNA 3AA7A 3LK2B 3AA0A 2KZ7B 5ADXL 3LK41 3LK42 3AA1A 5AFUK 3AA1B 1IZNB 3AAAB 3AA6A 2KZ7A 3AA0B 3AA6B 3AAEA 3LK3A 2KXPB 5ADXK 5AFUL 4AKRB 3LK3B 2KXPA 3AAEB 4AKRA 3AAAA
chains in the Genus database with same CATH superfamily
3LK2A 2XG6A 2ZLDA 4FMSA 4AYNA 4N74A 2FGQX 1Q9GA 4FRTA 5G26A 4RLCA 1ZHTA 4UB8O 1H6S1 1BT9A 3AA1A 1HXXA 1P4TA 4RL9A 1HXTA 3AA1B 3D7IA 1ZHWA 2XMXA 3LVYA 1ME5A 3DWOX 3PGSA 4FESA 3GP6A 2R4LA 2J4UP 2OUWA 2PFXA 1ZHZA 3QRCA 1G90A 3DZMA 3UAQA 1GU9A 2X27X 5DIKA 1ORMA 5GV0A 3BRYA 4AKMA 4AYMC 3PORA 2YNKA 4N75A 4UB6O 5KAFO 1YS5A 5B5EO 2K0LA 2GE4A 3DA4A 2W81C 4N59A 4FZMA 2R88A 1T1LA 2MNHA 2W80C 2KXPA 1GFNA 3QRAA 2Y0KA 4CTDA 4E1SA 1Q9FA 3JTYA 3AA7B 4KRAA 4G76A 4Z3TA 4XNLA 4LSHA 3WI5A 3AA7A 2KZ7B 2J1NA 4K3CA 4F4BA 2ODJA 1BH3A 2XE3A 4LSEA 3EMNX 1MM4A 4GCPA 5ADXL 1ZHYA 5DL6A 3LK41 3LK42 5B66O 6PRNA 8PRNA 1GFPA 2GMYA 4FUVA 3SZDA 3T24A 3JCUO 4FOZA 4GCSA 4AYEC 1QJ9A 1S5LO 3WU2O 3NSGA 2IWVA 2R4NA 3BEYA 2Y0HA 3K19A 4K3BA 1QJ8A 3VZWX 2Y7SA 1T16A 4FQEA 3AA0B 2JMMA 5H2FO 4KR8A 2F1CX 2JN8A 2XTRA 2AF7A 1GFMA 2IJCA 3LK3A 4RJXA 3C5OA 4KR4A 2ERVA 5ADXK 3SYBA 3A0BO 2YPVA 4QQ1A 4JFBA 3SZVA 4AYID 1ZHXA 4FZLA 4JCHA 5DL8A 5GTHO 1LW1A 3NJTA 2JQYA 2PRRA 3VY8X 4GCQA 4C00A 4FSOA 1OPFA 2N2MA 4C69X 4XNKA 3SY9A 4AKRA 2LHFA 2R4PA 4O3ZA 3T0SA 3LK2B 3POUA 2F1TA 4GF4A 4RJWA 7PRNA 4O49A 2N2LA 1GFQA 3HW9A 5FVNA 2R4OA 1HXUA 3BRZA 3VZTX 4D5UA 4U9CA 5EE2A 3V8UA 3VZUX 2ES9A 5TISO 3DA3A 3RBHA 4FSPA 3KVDD 3POQA 1MPFA 2ZFGA 3PRNA 5IYUA 2XE1A 3PGUA 3POXA 4AZLA 2FGRA 2LFUA 4O3XB 3A0HO 2R89A 3AAEA 5PRNA 3A2SX 5G38A 4D65A 2QEUA 1MM5A 2WVPA 2WJQA 5DIPA 4LSFA 4O3WA 5E79O 3VE2A 4PJ0O 5G3AA 5KAIO 2XTQA 4AFKA 3FYXA 3SY7A 4AKRB 3LK3B 4AYDC 2Y2XA 4C4VB 2O4VA 2X9KA 3AAEB 3KZIO 4N58A 2XE2A 3AAAA 1IZNA 4PUXA 3O0EA 4D64A 1OSMA 1P8CA 2IWWA 2KC0A 3VE1A 5D5DA 3AA0A 3T20A 3HOLA 2CWQA 4FZNA 3UU2A 2WJRA 4AUIA 3C1LA 2OYOA 1THQA 4PR7A 1GFOA 2OMFA 3WI4A 5AFUK 2QTKA 3VY9X 2M06A 2O4DA 3PF1A 2PRNA 5T5FA 4RLBA 5JDPA 1E54A 2PORA 1IZNB 2MHLA 3AAAB 3TZGA 2R8AA 1QJPA 3HOEA 3AA6A 4C4VA 2KZ7A 3AA6B 2Q0TA 4LSIA 5DL7A 5G39A 2Y0LA 3G7GA 3DWNA 3PGRA 3PQSA 2AXTO 4O4UA 5DL5A 4FRXA 4E1TA 2KXPB 3HWBA 1VKEA 4IL6O 4BUMX 3PQUA 4FT6A 4GHBA 4B61A 5AFUL 2M07A 5GTIO 3UPGA 3BS0A 4G75A 2XE5A 2K4TA 1KNCA 2F1VA 4O4XA 4G9QA 3SYSA 1BXWA 2KDYA 1PHOA 1PRNA 4O3YA
chains in the Genus database with same CATH topology
3LK2A 2XG6A 2ZLDA 4FMSA 4AYNA 2FGQX 1Q9GA 4FRTA 5G26A 4RLCA 1ZHTA 1H6S1 1BT9A 3AA1A 1HXXA 1P4TA 4RL9A 1HXTA 3AA1B 3D7IA 1ZHWA 2XMXA 3LVYA 1ME5A 4FESA 3GP6A 2J4UP 2OUWA 2PFXA 1ZHZA 3QRCA 1G90A 3UAQA 1GU9A 2X27X 5DIKA 1ORMA 5GV0A 4AKMA 4AYMC 3PORA 2YNKA 1YS5A 2K0LA 2GE4A 3DA4A 2W81C 4N59A 4FZMA 2MNHA 2W80C 2KXPA 1GFNA 3QRAA 2Y0KA 4E1SA 1Q9FA 3JTYA 3AA7B 4KRAA 4G76A 4Z3TA 4XNLA 4LSHA 3WI5A 3AA7A 2KZ7B 2J1NA 4F4BA 2ODJA 1BH3A 2XE3A 4LSEA 3EMNX 1MM4A 4GCPA 5ADXL 1ZHYA 5DL6A 3LK41 3LK42 6PRNA 8PRNA 1GFPA 2GMYA 4FUVA 3SZDA 3T24A 4AYEC 4FOZA 4GCSA 1QJ9A 3NSGA 3BEYA 2Y0HA 3K19A 4BUMX 1QJ8A 3VZWX 2Y7SA 3AA0B 2JMMA 4KR8A 2JN8A 2XTRA 2AF7A 1GFMA 2IJCA 3LK3A 4RJXA 3C5OA 4KR4A 2ERVA 5ADXK 3SYBA 4QQ1A 2YPVA 3SZVA 4JFBA 4AYID 1ZHXA 4FZLA 4JCHA 5DL8A 1LW1A 2PRRA 3VY8X 4GCQA 4FSOA 1OPFA 2N2MA 4C69X 4XNKA 3SY9A 4AKRA 2LHFA 4O3ZA 3T0SA 3LK2B 3POUA 2F1TA 4GF4A 4RJWA 7PRNA 4O49A 2N2LA 1GFQA 3HW9A 5FVNA 1HXUA 3VZTX 4D5UA 4U9CA 5EE2A 3V8UA 3VZUX 2ES9A 3RBHA 3DA3A 4FSPA 3KVDD 3POQA 1MPFA 2ZFGA 3PRNA 5IYUA 2XE1A 3POXA 4AZLA 2FGRA 2LFUA 4O3XB 3AAEA 5PRNA 3A2SX 4D65A 2QEUA 1MM5A 4LSFA 5DIPA 4O3WA 3VE2A 2XTQA 4AFKA 3FYXA 3SY7A 4AKRB 3LK3B 4AYDC 2Y2XA 2O4VA 3AAEB 4N58A 2XE2A 3AAAA 1IZNA 4PUXA 3O0EA 4D64A 1OSMA 1P8CA 2KC0A 3VE1A 5D5DA 3AA0A 3T20A 3HOLA 2CWQA 4FZNA 3UU2A 4AUIA 3C1LA 2OYOA 1THQA 1GFOA 2OMFA 3WI4A 5AFUK 2QTKA 3VY9X 2M06A 2O4DA 2PRNA 5T5FA 4RLBA 5JDPA 1E54A 2PORA 1IZNB 2MHLA 3AAAB 3TZGA 3HOEA 1QJPA 3AA6A 2KZ7A 3AA6B 2Q0TA 4LSIA 5DL7A 2Y0LA 3G7GA 4O4UA 3PQSA 5DL5A 4FRXA 4E1TA 2KXPB 3HWBA 1VKEA 3PQUA 4FT6A 4GHBA 4B61A 5AFUL 2M07A 3UPGA 4G75A 2XE5A 2K4TA 1KNCA 2F1VA 4O4XA 4G9QA 3SYSA 1BXWA 2KDYA 1PHOA 1PRNA 4O3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LK2 A;  3AA7 B;  1IZN A;  3AA7 A;  3LK2 B;  3AA0 A;  2KZ7 B;  5ADX L;  3LK4 1;  3LK4 2;  3AA1 A;  5AFU K;  3AA1 B;  1IZN B;  3AAA B;  3AA6 A;  2KZ7 A;  3AA0 B;  3AA6 B;  3AAE A;  3LK3 A;  2KXP B;  5ADX K;  5AFU L;  4AKR B;  3LK3 B;  2KXP A;  3AAE B;  4AKR A;  3AAA A; 
#chains in the Genus database with same CATH topology
 3LK2 A;  2XG6 A;  2ZLD A;  4FMS A;  4AYN A;  4N74 A;  2FGQ X;  1Q9G A;  4FRT A;  5G26 A;  4RLC A;  1ZHT A;  4UB8 O;  1H6S 1;  1BT9 A;  3AA1 A;  1HXX A;  1P4T A;  4RL9 A;  1HXT A;  3AA1 B;  3D7I A;  1ZHW A;  2XMX A;  3LVY A;  1ME5 A;  3DWO X;  3PGS A;  4FES A;  3GP6 A;  2R4L A;  2J4U P;  2OUW A;  2PFX A;  1ZHZ A;  3QRC A;  1G90 A;  3DZM A;  3UAQ A;  1GU9 A;  2X27 X;  5DIK A;  1ORM A;  5GV0 A;  3BRY A;  4AKM A;  4AYM C;  3POR A;  2YNK A;  4N75 A;  4UB6 O;  5KAF O;  1YS5 A;  5B5E O;  2K0L A;  2GE4 A;  3DA4 A;  2W81 C;  4N59 A;  4FZM A;  2R88 A;  1T1L A;  2MNH A;  2W80 C;  2KXP A;  1GFN A;  3QRA A;  2Y0K A;  4CTD A;  4E1S A;  1Q9F A;  3JTY A;  3AA7 B;  4KRA A;  4G76 A;  4Z3T A;  4XNL A;  4LSH A;  3WI5 A;  3AA7 A;  2KZ7 B;  2J1N A;  4K3C A;  4F4B A;  2ODJ A;  1BH3 A;  2XE3 A;  4LSE A;  3EMN X;  1MM4 A;  4GCP A;  5ADX L;  1ZHY A;  5DL6 A;  3LK4 1;  3LK4 2;  5B66 O;  6PRN A;  8PRN A;  1GFP A;  2GMY A;  4FUV A;  3SZD A;  3T24 A;  3JCU O;  4FOZ A;  4GCS A;  4AYE C;  1QJ9 A;  1S5L O;  3WU2 O;  3NSG A;  2IWV A;  2R4N A;  3BEY A;  2Y0H A;  3K19 A;  4K3B A;  1QJ8 A;  3VZW X;  2Y7S A;  1T16 A;  4FQE A;  3AA0 B;  2JMM A;  5H2F O;  4KR8 A;  2F1C X;  2JN8 A;  2XTR A;  2AF7 A;  1GFM A;  2IJC A;  3LK3 A;  4RJX A;  3C5O A;  4KR4 A;  2ERV A;  5ADX K;  3SYB A;  3A0B O;  2YPV A;  4QQ1 A;  4JFB A;  3SZV A;  4AYI D;  1ZHX A;  4FZL A;  4JCH A;  5DL8 A;  5GTH O;  1LW1 A;  3NJT A;  2JQY A;  2PRR A;  3VY8 X;  4GCQ A;  4C00 A;  4FSO A;  1OPF A;  2N2M A;  4C69 X;  4XNK A;  3SY9 A;  4AKR A;  2LHF A;  2R4P A;  4O3Z A;  3T0S A;  3LK2 B;  3POU A;  2F1T A;  4GF4 A;  4RJW A;  7PRN A;  4O49 A;  2N2L A;  1GFQ A;  3HW9 A;  5FVN A;  2R4O A;  1HXU A;  3BRZ A;  3VZT X;  4D5U A;  4U9C A;  5EE2 A;  3V8U A;  3VZU X;  2ES9 A;  5TIS O;  3DA3 A;  3RBH A;  4FSP A;  3KVD D;  3POQ A;  1MPF A;  2ZFG A;  3PRN A;  5IYU A;  2XE1 A;  3PGU A;  3POX A;  4AZL A;  2FGR A;  2LFU A;  4O3X B;  3A0H O;  2R89 A;  3AAE A;  5PRN A;  3A2S X;  5G38 A;  4D65 A;  2QEU A;  1MM5 A;  2WVP A;  2WJQ A;  5DIP A;  4LSF A;  4O3W A;  5E79 O;  3VE2 A;  4PJ0 O;  5G3A A;  5KAI O;  2XTQ A;  4AFK A;  3FYX A;  3SY7 A;  4AKR B;  3LK3 B;  4AYD C;  2Y2X A;  4C4V B;  2O4V A;  2X9K A;  3AAE B;  3KZI O;  4N58 A;  2XE2 A;  3AAA A;  1IZN A;  4PUX A;  3O0E A;  4D64 A;  1OSM A;  1P8C A;  2IWW A;  2KC0 A;  3VE1 A;  5D5D A;  3AA0 A;  3T20 A;  3HOL A;  2CWQ A;  4FZN A;  3UU2 A;  2WJR A;  4AUI A;  3C1L A;  2OYO A;  1THQ A;  4PR7 A;  1GFO A;  2OMF A;  3WI4 A;  5AFU K;  2QTK A;  3VY9 X;  2M06 A;  2O4D A;  3PF1 A;  2PRN A;  5T5F A;  4RLB A;  5JDP A;  1E54 A;  2POR A;  1IZN B;  2MHL A;  3AAA B;  3TZG A;  2R8A A;  1QJP A;  3HOE A;  3AA6 A;  4C4V A;  2KZ7 A;  3AA6 B;  2Q0T A;  4LSI A;  5DL7 A;  5G39 A;  2Y0L A;  3G7G A;  3DWN A;  3PGR A;  3PQS A;  2AXT O;  4O4U A;  5DL5 A;  4FRX A;  4E1T A;  2KXP B;  3HWB A;  1VKE A;  4IL6 O;  4BUM X;  3PQU A;  4FT6 A;  4GHB A;  4B61 A;  5AFU L;  2M07 A;  5GTI O;  3UPG A;  3BS0 A;  4G75 A;  2XE5 A;  2K4T A;  1KNC A;  2F1V A;  4O4X A;  4G9Q A;  3SYS A;  1BXW A;  2KDY A;  1PHO A;  1PRN A;  4O3Y A; 
#chains in the Genus database with same CATH homology
 3LK2 A;  2XG6 A;  2ZLD A;  4FMS A;  4AYN A;  2FGQ X;  1Q9G A;  4FRT A;  5G26 A;  4RLC A;  1ZHT A;  1H6S 1;  1BT9 A;  3AA1 A;  1HXX A;  1P4T A;  4RL9 A;  1HXT A;  3AA1 B;  3D7I A;  1ZHW A;  2XMX A;  3LVY A;  1ME5 A;  4FES A;  3GP6 A;  2J4U P;  2OUW A;  2PFX A;  1ZHZ A;  3QRC A;  1G90 A;  3UAQ A;  1GU9 A;  2X27 X;  5DIK A;  1ORM A;  5GV0 A;  4AKM A;  4AYM C;  3POR A;  2YNK A;  1YS5 A;  2K0L A;  2GE4 A;  3DA4 A;  2W81 C;  4N59 A;  4FZM A;  2MNH A;  2W80 C;  2KXP A;  1GFN A;  3QRA A;  2Y0K A;  4E1S A;  1Q9F A;  3JTY A;  3AA7 B;  4KRA A;  4G76 A;  4Z3T A;  4XNL A;  4LSH A;  3WI5 A;  3AA7 A;  2KZ7 B;  2J1N A;  4F4B A;  2ODJ A;  1BH3 A;  2XE3 A;  4LSE A;  3EMN X;  1MM4 A;  4GCP A;  5ADX L;  1ZHY A;  5DL6 A;  3LK4 1;  3LK4 2;  6PRN A;  8PRN A;  1GFP A;  2GMY A;  4FUV A;  3SZD A;  3T24 A;  4AYE C;  4FOZ A;  4GCS A;  1QJ9 A;  3NSG A;  3BEY A;  2Y0H A;  3K19 A;  4BUM X;  1QJ8 A;  3VZW X;  2Y7S A;  3AA0 B;  2JMM A;  4KR8 A;  2JN8 A;  2XTR A;  2AF7 A;  1GFM A;  2IJC A;  3LK3 A;  4RJX A;  3C5O A;  4KR4 A;  2ERV A;  5ADX K;  3SYB A;  4QQ1 A;  2YPV A;  3SZV A;  4JFB A;  4AYI D;  1ZHX A;  4FZL A;  4JCH A;  5DL8 A;  1LW1 A;  2PRR A;  3VY8 X;  4GCQ A;  4FSO A;  1OPF A;  2N2M A;  4C69 X;  4XNK A;  3SY9 A;  4AKR A;  2LHF A;  4O3Z A;  3T0S A;  3LK2 B;  3POU A;  2F1T A;  4GF4 A;  4RJW A;  7PRN A;  4O49 A;  2N2L A;  1GFQ A;  3HW9 A;  5FVN A;  1HXU A;  3VZT X;  4D5U A;  4U9C A;  5EE2 A;  3V8U A;  3VZU X;  2ES9 A;  3RBH A;  3DA3 A;  4FSP A;  3KVD D;  3POQ A;  1MPF A;  2ZFG A;  3PRN A;  5IYU A;  2XE1 A;  3POX A;  4AZL A;  2FGR A;  2LFU A;  4O3X B;  3AAE A;  5PRN A;  3A2S X;  4D65 A;  2QEU A;  1MM5 A;  4LSF A;  5DIP A;  4O3W A;  3VE2 A;  2XTQ A;  4AFK A;  3FYX A;  3SY7 A;  4AKR B;  3LK3 B;  4AYD C;  2Y2X A;  2O4V A;  3AAE B;  4N58 A;  2XE2 A;  3AAA A;  1IZN A;  4PUX A;  3O0E A;  4D64 A;  1OSM A;  1P8C A;  2KC0 A;  3VE1 A;  5D5D A;  3AA0 A;  3T20 A;  3HOL A;  2CWQ A;  4FZN A;  3UU2 A;  4AUI A;  3C1L A;  2OYO A;  1THQ A;  1GFO A;  2OMF A;  3WI4 A;  5AFU K;  2QTK A;  3VY9 X;  2M06 A;  2O4D A;  2PRN A;  5T5F A;  4RLB A;  5JDP A;  1E54 A;  2POR A;  1IZN B;  2MHL A;  3AAA B;  3TZG A;  3HOE A;  1QJP A;  3AA6 A;  2KZ7 A;  3AA6 B;  2Q0T A;  4LSI A;  5DL7 A;  2Y0L A;  3G7G A;  4O4U A;  3PQS A;  5DL5 A;  4FRX A;  4E1T A;  2KXP B;  3HWB A;  1VKE A;  3PQU A;  4FT6 A;  4GHB A;  4B61 A;  5AFU L;  2M07 A;  3UPG A;  4G75 A;  2XE5 A;  2K4T A;  1KNC A;  2F1V A;  4O4X A;  4G9Q A;  3SYS A;  1BXW A;  2KDY A;  1PHO A;  1PRN A;  4O3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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