3ABHA

Crystal structure of the efc/f-bar domain of human pacsin2/syndapin ii (2.0 a)
Total Genus 114
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
288
structure length
288
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Endocytosis
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
publication title Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II
pubmed doi rcsb
source organism Homo sapiens
total genus 114
structure length 288
sequence length 288
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3abhA01
1I49A 2EFLA 1Y2OA 2X3XA 3LLLA 4AKVA 4DCNC 3QNIA 4NQIA 4NSWA 4H8SA 2X3VA 3HAHA 4WPCA 3Q0KA 1URUA 3CAZA 2ELBA 3HAJA 2Q13A 2D1LA 2Z0OA 1ZWWA 4WPEA 3DYTA 2D4CA 3SOGA 1I4DA 1WDZA 3HAIA 3ACOA 4DYLA 4AVMA 4FZSA 4I1QA 2RAKA 2Z0NA 3QWEA 2RAJA 1I4TA 3Q84A 3G9GA 1I4LA 3I2WA 2Z0VA 1X04A 2RAIA 2FICA 3ABHA 5C5BB 2C08A 4BNEA 2Q12A 3OK8A 4ATMA 1X03A 2X3WA 5C5BA 2YKTA 2EFKA 3M3WA 3SYVA 3QE6A 3PLTA 2V0OA
chains in the Genus database with same CATH superfamily
1I49A 1TQSA 3LLLA 4IW0A 3QNIA 1URUA 1OA1A 3ERCC 2LM0A 3BUDA 3T48A 2RAJA 4AZBA 4AZ5A 2F18A 2EX3B 5C5BA 3T46A 5FIGA 1TQVA 2KHOA 3HAJA 2D1LA 3BUBA 1HWWA 3SOGA 3LMFA 4KIKA 2PY6A 3ZEDA 3CZSA 3QNJA 4ATMA 1E9VA 3DX2A 2YL6A 4F01A 2F7QA 3PLTA 4UDXX 4NQIA 2YIVX 1GNTA 1YWMA 2GF4A 2GA9D 4HR1B 3CKDA 4KIKB 3QA8A 5KBPA 4FZSA 3QWEA 4FZPA 2RAIA 3CVRA 1E2UA 3BVXA 4AKVA 5E84A 2X5CA 2X3VA 2LXYA 2YI9A 1OA0A 1MJGA 4JNFA 1DKYA 1WDZA 4IM3A 3EJTA 3BUPA 2JNSA 4AZIA 2OZNB 3SYVA 2YLLA 4F00A 3O3NB 3VKHA 3DPQA 1R5EA 4M0MA 1QWNA 3DPPA 2Z8YA 2YL9A 4PO2A 4WPEA 3UITA 4E3CA 1SU6A 4E81A 3B52X 3G9GA 3BVVA 2NCZA 5TKYA 2N3KA 1PS3A 4EZVA 4EZRA 3EJRA 3GI7A 3LVTA 4H8SA 3KAVA 1TQWA 3O3MB 3Q0KA 4EZTA 4AZCB 4HYBA 3B53X 4BNEA 1LQ7A 3BUIA 4FM3A 3DPOA 5FLEX 4AZ7A 3CAZA 3RV0A 4DYLA 4HR1A 4JWDA 2Z0NA 1I4LA 2OBMA 4EZZA 3ABHA 3DDGA 2Q12A 3O3OB 1QX1A 2RT6A 4IWQA 2V0OA 3EJQA 3T49A 1SU7A 2GAFD 4UDYX 1SUFA 1W9MA 1I4DA 4R5IA 4AZ6A 2C08A 2EWFA 3FD9A 3D4YA 1Y2OA 3CV5A 2ELBA 3RV1A 3C7NA 3BLBA 2RAKA 4R5LA 2Z0VA 2ZXQA 1HTYA 3D2FA 4IWPA 4R5JA 3BVWA 3BUQA 3D52A 4JN4A 3DX3A 3DX4A 3M3WA 1JQKA 4DCNC 3L3OM 4H6IA 4EZXA 4WPCA 4AZHA 3VEBA 3DYTA 2D4CA 1ZYLA 4G6QA 2YL5A 4JLCA 3EJSA 4AZCA 4IM0A 3T4AG 4NPHA 2YKTA 3QE6A 2YIAA 2O0I1 4NSWA 1TQTA 2OBLA 4EZYA 1ZWWA 3EJUA 2F7OA 3HAIA 3I39X 3L3PA 1DKXA 3KDRA 3CZNA 2ALWA 2FICA 4IWOA 4JWEA 4EZUA 4EZNA 1R33A 2OW6A 2YL8A 3VEAA 4H6HA 2YI8A 3B51X 3I04A 3T47A 3ACOA 1O7DC 4HY9A 3Q84A 2ND0A 1R34A 1QWUA 2EFKA 1DKZA 1E1DA 2F7RA 2F1AA 4EZOA 3A98A 4EZQA 2F1BA 2PMRA 2Z0OA 3D51A 3KAWA 3DX1A 3I2WA 2QFFA 5C5BB 4JL9A 3D2EA 4R5GA 4IM2A 4D8JA 3EJPA 4EZSA 2YLAA 1GNLA 3D4ZA 2EFLA 2X3XA 2OW7A 4B9QA 2YIBA 1TQUA 2Q13A 1HXKA 4EZPA 4JWIA 4AVMA 4I1QA 3I01A 2FYVA 2JNKA 1X04A 3OHXM 3ER8C 3ER9B 3BVTA 2QKWA 2F7PA 2OO2A 3HAHA 4EZWA 4JWCA 3DX0A 2ND1A 2WINM 1GN9A 3D50A 1SU8A 4AZGA 2X3WA 2MI7A 3OWGA 4JNEA 2WYIA 1UPXA 1O7DB 4R5KA 2WYHA 1OAOA 3F7WA 3RPMA 1I4TA 4FZOA 2QXLA 3BVUA 3OK8A 1X03A 1U00A 3DDFA
chains in the Genus database with same CATH topology
1I49A 2EFLA 1Y2OA 2X3XA 3LLLA 4AKVA 4DCNC 3QNIA 4NQIA 4NSWA 4H8SA 2X3VA 3HAHA 4WPCA 3Q0KA 1URUA 3CAZA 2ELBA 3HAJA 2Q13A 2D1LA 2Z0OA 1ZWWA 4WPEA 3DYTA 2D4CA 3SOGA 1I4DA 1WDZA 3HAIA 3ACOA 4DYLA 4AVMA 4FZSA 4I1QA 2RAKA 2Z0NA 3QWEA 2RAJA 1I4TA 3Q84A 3G9GA 1I4LA 3I2WA 2Z0VA 1X04A 2RAIA 2FICA 3ABHA 5C5BB 2C08A 4BNEA 2Q12A 3OK8A 4ATMA 1X03A 2X3WA 5C5BA 2YKTA 2EFKA 3M3WA 3SYVA 3QE6A 3PLTA 2V0OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I49 A;  2EFL A;  1Y2O A;  2X3X A;  3LLL A;  4AKV A;  4DCN C;  3QNI A;  4NQI A;  4NSW A;  4H8S A;  2X3V A;  3HAH A;  4WPC A;  3Q0K A;  1URU A;  3CAZ A;  2ELB A;  3HAJ A;  2Q13 A;  2D1L A;  2Z0O A;  1ZWW A;  4WPE A;  3DYT A;  2D4C A;  3SOG A;  1I4D A;  1WDZ A;  3HAI A;  3ACO A;  4DYL A;  4AVM A;  4FZS A;  4I1Q A;  2RAK A;  2Z0N A;  3QWE A;  2RAJ A;  1I4T A;  3Q84 A;  3G9G A;  1I4L A;  3I2W A;  2Z0V A;  1X04 A;  2RAI A;  2FIC A;  3ABH A;  5C5B B;  2C08 A;  4BNE A;  2Q12 A;  3OK8 A;  4ATM A;  1X03 A;  2X3W A;  5C5B A;  2YKT A;  2EFK A;  3M3W A;  3SYV A;  3QE6 A;  3PLT A;  2V0O A; 
#chains in the Genus database with same CATH topology
 1I49 A;  1TQS A;  3LLL A;  4IW0 A;  3QNI A;  1URU A;  1OA1 A;  3ERC C;  2LM0 A;  3BUD A;  3T48 A;  2RAJ A;  4AZB A;  4AZ5 A;  2F18 A;  2EX3 B;  5C5B A;  3T46 A;  5FIG A;  1TQV A;  2KHO A;  3HAJ A;  2D1L A;  3BUB A;  1HWW A;  3SOG A;  3LMF A;  4KIK A;  2PY6 A;  3ZED A;  3CZS A;  3QNJ A;  4ATM A;  1E9V A;  3DX2 A;  2YL6 A;  4F01 A;  2F7Q A;  3PLT A;  4UDX X;  4NQI A;  2YIV X;  1GNT A;  1YWM A;  2GF4 A;  2GA9 D;  4HR1 B;  3CKD A;  4KIK B;  3QA8 A;  5KBP A;  4FZS A;  3QWE A;  4FZP A;  2RAI A;  3CVR A;  1E2U A;  3BVX A;  4AKV A;  5E84 A;  2X5C A;  2X3V A;  2LXY A;  2YI9 A;  1OA0 A;  1MJG A;  4JNF A;  1DKY A;  1WDZ A;  4IM3 A;  3EJT A;  3BUP A;  2JNS A;  4AZI A;  2OZN B;  3SYV A;  2YLL A;  4F00 A;  3O3N B;  3VKH A;  3DPQ A;  1R5E A;  4M0M A;  1QWN A;  3DPP A;  2Z8Y A;  2YL9 A;  4PO2 A;  4WPE A;  3UIT A;  4E3C A;  1SU6 A;  4E81 A;  3B52 X;  3G9G A;  3BVV A;  2NCZ A;  5TKY A;  2N3K A;  1PS3 A;  4EZV A;  4EZR A;  3EJR A;  3GI7 A;  3LVT A;  4H8S A;  3KAV A;  1TQW A;  3O3M B;  3Q0K A;  4EZT A;  4AZC B;  4HYB A;  3B53 X;  4BNE A;  1LQ7 A;  3BUI A;  4FM3 A;  3DPO A;  5FLE X;  4AZ7 A;  3CAZ A;  3RV0 A;  4DYL A;  4HR1 A;  4JWD A;  2Z0N A;  1I4L A;  2OBM A;  4EZZ A;  3ABH A;  3DDG A;  2Q12 A;  3O3O B;  1QX1 A;  2RT6 A;  4IWQ A;  2V0O A;  3EJQ A;  3T49 A;  1SU7 A;  2GAF D;  4UDY X;  1SUF A;  1W9M A;  1I4D A;  4R5I A;  4AZ6 A;  2C08 A;  2EWF A;  3FD9 A;  3D4Y A;  1Y2O A;  3CV5 A;  2ELB A;  3RV1 A;  3C7N A;  3BLB A;  2RAK A;  4R5L A;  2Z0V A;  2ZXQ A;  1HTY A;  3D2F A;  4IWP A;  4R5J A;  3BVW A;  3BUQ A;  3D52 A;  4JN4 A;  3DX3 A;  3DX4 A;  3M3W A;  1JQK A;  4DCN C;  3L3O M;  4H6I A;  4EZX A;  4WPC A;  4AZH A;  3VEB A;  3DYT A;  2D4C A;  1ZYL A;  4G6Q A;  2YL5 A;  4JLC A;  3EJS A;  4AZC A;  4IM0 A;  3T4A G;  4NPH A;  2YKT A;  3QE6 A;  2YIA A;  2O0I 1;  4NSW A;  1TQT A;  2OBL A;  4EZY A;  1ZWW A;  3EJU A;  2F7O A;  3HAI A;  3I39 X;  3L3P A;  1DKX A;  3KDR A;  3CZN A;  2ALW A;  2FIC A;  4IWO A;  4JWE A;  4EZU A;  4EZN A;  1R33 A;  2OW6 A;  2YL8 A;  3VEA A;  4H6H A;  2YI8 A;  3B51 X;  3I04 A;  3T47 A;  3ACO A;  1O7D C;  4HY9 A;  3Q84 A;  2ND0 A;  1R34 A;  1QWU A;  2EFK A;  1DKZ A;  1E1D A;  2F7R A;  2F1A A;  4EZO A;  3A98 A;  4EZQ A;  2F1B A;  2PMR A;  2Z0O A;  3D51 A;  3KAW A;  3DX1 A;  3I2W A;  2QFF A;  5C5B B;  4JL9 A;  3D2E A;  4R5G A;  4IM2 A;  4D8J A;  3EJP A;  4EZS A;  2YLA A;  1GNL A;  3D4Z A;  2EFL A;  2X3X A;  2OW7 A;  4B9Q A;  2YIB A;  1TQU A;  2Q13 A;  1HXK A;  4EZP A;  4JWI A;  4AVM A;  4I1Q A;  3I01 A;  2FYV A;  2JNK A;  1X04 A;  3OHX M;  3ER8 C;  3ER9 B;  3BVT A;  2QKW A;  2F7P A;  2OO2 A;  3HAH A;  4EZW A;  4JWC A;  3DX0 A;  2ND1 A;  2WIN M;  1GN9 A;  3D50 A;  1SU8 A;  4AZG A;  2X3W A;  2MI7 A;  3OWG A;  4JNE A;  2WYI A;  1UPX A;  1O7D B;  4R5K A;  2WYH A;  1OAO A;  3F7W A;  3RPM A;  1I4T A;  4FZO A;  2QXL A;  3BVU A;  3OK8 A;  1X03 A;  1U00 A;  3DDF A; 
#chains in the Genus database with same CATH homology
 1I49 A;  2EFL A;  1Y2O A;  2X3X A;  3LLL A;  4AKV A;  4DCN C;  3QNI A;  4NQI A;  4NSW A;  4H8S A;  2X3V A;  3HAH A;  4WPC A;  3Q0K A;  1URU A;  3CAZ A;  2ELB A;  3HAJ A;  2Q13 A;  2D1L A;  2Z0O A;  1ZWW A;  4WPE A;  3DYT A;  2D4C A;  3SOG A;  1I4D A;  1WDZ A;  3HAI A;  3ACO A;  4DYL A;  4AVM A;  4FZS A;  4I1Q A;  2RAK A;  2Z0N A;  3QWE A;  2RAJ A;  1I4T A;  3Q84 A;  3G9G A;  1I4L A;  3I2W A;  2Z0V A;  1X04 A;  2RAI A;  2FIC A;  3ABH A;  5C5B B;  2C08 A;  4BNE A;  2Q12 A;  3OK8 A;  4ATM A;  1X03 A;  2X3W A;  5C5B A;  2YKT A;  2EFK A;  3M3W A;  3SYV A;  3QE6 A;  3PLT A;  2V0O A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...